Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48497 * 109.46939 * 270.00240 * 3 2 1 5 5 H 1.48506 * 109.46894 * 30.00134 * 3 2 1 6 6 H 1.48503 * 109.47132 * 149.99777 * 3 2 1 7 7 C 1.38956 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99893 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00163 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00170 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00452 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47246 * 179.97438 * 12 10 9 14 14 C 1.76204 * 102.99857 * 179.97438 * 13 12 10 15 15 N 1.31087 * 126.00810 * 359.97438 * 14 13 12 16 16 N 1.40104 * 107.99042 * 179.77804 * 15 14 13 17 17 C 1.31035 * 108.00495 * 0.38280 * 16 15 14 18 18 N 1.38894 * 125.98654 * 179.89392 * 17 16 15 19 19 N 1.36611 * 108.01882 * 359.62549 * 17 16 15 20 20 C 1.46493 * 125.99812 * 180.22326 * 19 17 16 21 21 C 1.53005 * 117.49957 * 197.98267 * 20 19 17 22 22 C 1.53002 * 117.50071 * 129.32255 * 20 19 17 23 23 H 0.97004 * 119.99780 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00203 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47090 * 59.99238 * 12 10 9 26 26 H 1.09003 * 109.46662 * 299.99912 * 12 10 9 27 27 H 0.97001 * 119.99903 * 174.31015 * 18 17 16 28 28 H 0.96999 * 120.00383 * 354.02573 * 18 17 16 29 29 H 1.09004 * 115.55248 * 343.65171 * 20 19 17 30 30 H 1.08998 * 117.49585 * 0.02562 * 21 20 19 31 31 H 1.08998 * 117.50056 * 145.01403 * 21 20 19 32 32 H 1.09000 * 117.49922 * 214.97752 * 22 20 19 33 33 H 1.09001 * 117.49889 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0535 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3709 0.0001 13 16 6.1651 -4.0812 -0.0009 14 6 7.9159 -3.8827 -0.0002 15 7 8.5622 -2.7422 0.0004 16 7 9.9349 -3.0227 0.0061 17 6 10.0822 -4.3248 0.0004 18 7 11.2907 -5.0094 0.0011 19 7 8.8389 -4.8907 -0.0003 20 6 8.5462 -6.3261 -0.0013 21 6 7.1404 -6.7603 -0.4209 22 6 7.5622 -6.8473 1.0480 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3635 0.0004 25 1 5.9233 -1.8581 0.8910 26 1 5.9246 -1.8559 -0.8889 27 1 11.3004 -5.9761 0.0798 28 1 12.1248 -4.5211 -0.0813 29 1 9.3770 -6.9752 -0.2783 30 1 6.4334 -5.9778 -0.6966 31 1 7.0462 -7.6949 -0.9737 32 1 7.7454 -7.8393 1.4610 33 1 7.1329 -6.1222 1.7394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318260121.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = 65.265597 kcal Electronic energy + Delta-G solvation = -19251.314415 eV Core-core repulsion = 16054.430856 eV Total energy + Delta-G solvation = -3196.883559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.96414 -40.31470 -38.34704 -36.14384 -35.80810 -33.86911 -32.96395 -31.30093 -30.33196 -26.55792 -24.94539 -23.61344 -23.14668 -22.26533 -21.41326 -20.40730 -19.06422 -18.38974 -17.83798 -17.22890 -17.02649 -16.76570 -16.45928 -16.31382 -15.78994 -15.45570 -14.91712 -14.73826 -14.43903 -13.96776 -13.90063 -13.01164 -12.88554 -12.72874 -12.51465 -12.45811 -12.25276 -12.16882 -12.01602 -11.60369 -11.59381 -11.18276 -10.71998 -10.57903 -10.33634 -9.80871 -8.61800 -8.46421 -6.08147 -0.21803 0.77649 0.97887 1.27213 1.30123 1.32774 1.42508 1.51083 1.75911 2.19169 2.50061 2.69138 2.76108 3.08906 3.37867 3.70500 3.80100 3.94232 4.01469 4.07508 4.19990 4.35505 4.64825 4.73677 4.87555 5.05023 5.11314 5.45479 5.46045 5.86570 6.28248 6.42812 6.46166 6.76041 7.22094 7.26192 7.75331 8.69970 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.003990 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.817354 B = 7015.737822 C = 7865.121125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.237 1.237 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.576 5.576 10 C 0.470 3.530 11 O -0.605 6.605 12 C -0.151 4.151 13 S 0.101 5.899 14 C 0.181 3.819 15 N -0.342 5.342 16 N -0.417 5.417 17 C 0.493 3.507 18 N -0.803 5.803 19 N -0.477 5.477 20 C 0.040 3.960 21 C -0.184 4.184 22 C -0.171 4.171 23 H 0.282 0.718 24 H 0.391 0.609 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.425 0.575 28 H 0.433 0.567 29 H 0.186 0.814 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.933 -13.308 0.134 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.776 3.224 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.160 1.160 7 C -0.460 4.460 8 H 0.084 0.916 9 N -0.216 5.216 10 C 0.256 3.744 11 O -0.491 6.491 12 C -0.302 4.302 13 S 0.328 5.672 14 C -0.202 4.202 15 N -0.175 5.175 16 N -0.259 5.259 17 C 0.128 3.872 18 N -0.365 5.365 19 N -0.183 5.183 20 C -0.063 4.063 21 C -0.223 4.223 22 C -0.209 4.209 23 H 0.092 0.908 24 H 0.227 0.773 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.259 0.741 28 H 0.268 0.732 29 H 0.203 0.797 30 H 0.111 0.889 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.013 -13.102 0.144 26.482 hybrid contribution 0.537 0.941 0.005 1.083 sum 23.550 -12.161 0.149 26.505 Atomic orbital electron populations 1.69771 1.07912 1.29470 1.49168 1.26010 0.96399 1.02387 0.95690 0.85489 0.79505 0.77314 0.80119 1.18030 1.19531 1.16023 1.19057 0.80717 0.95422 1.50808 0.91569 1.41905 1.06185 1.07186 1.66277 1.19529 0.88089 0.84087 0.82689 1.90568 1.70503 1.31937 1.56056 1.23759 0.95292 1.01839 1.09278 1.86320 0.83029 1.05501 1.92383 1.26718 0.99655 0.87819 1.06026 1.78056 0.97477 1.19311 1.22698 1.77976 1.06286 1.08250 1.33344 1.21111 0.82393 0.88575 0.95166 1.40998 1.00921 1.10007 1.84573 1.45666 1.02804 1.07269 1.62528 1.22580 0.97785 0.77502 1.08471 1.23820 0.94455 1.04638 0.99361 1.23638 1.00458 1.04507 0.92307 0.90840 0.77306 0.85751 0.85550 0.74127 0.73232 0.79692 0.88909 0.83417 0.83563 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.84 13.96 21.66 0.30 -54.54 16 2 C 0.00 -0.25 5.50 84.93 0.47 0.22 16 3 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.24 -8.50 6.52 99.48 0.65 -7.85 16 7 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 8 H 0.07 4.50 7.39 -2.91 -0.02 4.48 16 9 N -0.58 -27.62 5.09 -306.98 -1.56 -29.18 16 10 C 0.47 21.59 7.80 87.66 0.68 22.28 16 11 O -0.60 -32.53 15.44 -3.08 -0.05 -32.57 16 12 C -0.15 -5.30 6.06 71.24 0.43 -4.86 16 13 S 0.10 3.20 16.33 -56.49 -0.92 2.28 16 14 C 0.18 5.52 7.91 179.56 1.42 6.94 16 15 N -0.34 -12.06 12.29 -56.87 -0.70 -12.76 16 16 N -0.42 -13.41 12.72 -57.80 -0.74 -14.15 16 17 C 0.49 11.36 9.14 259.95 2.38 13.73 16 18 N -0.80 -8.55 9.08 -57.82 -0.53 -9.07 16 19 N -0.48 -10.99 3.13 -503.04 -1.57 -12.56 16 20 C 0.04 0.55 6.70 45.00 0.30 0.85 16 21 C -0.18 -2.88 9.67 30.62 0.30 -2.58 16 22 C -0.17 -2.37 9.93 30.62 0.30 -2.07 16 23 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.39 15.99 5.76 -92.71 -0.53 15.46 16 25 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 26 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 27 H 0.43 1.40 8.09 -92.71 -0.75 0.65 16 28 H 0.43 3.38 8.95 -92.71 -0.83 2.55 16 29 H 0.19 0.85 7.48 -2.38 -0.02 0.83 16 30 H 0.09 2.15 4.28 -18.68 -0.08 2.07 16 31 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.68 7.67 -2.39 -0.02 1.67 16 Total: -1.00 -82.32 299.87 2.24 -80.08 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -1.04 Total: 25.19 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.13 Total: 16.15 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -4.79 Total: -132.26 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -0.92 Total: 2.28 kcal Total: -82.32 2.24 -80.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318260121.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.345 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds