Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40582 * 127.38637 * 90.02383 * 4 3 2 6 6 N 1.28903 * 106.83422 * 180.02562 * 5 4 3 7 7 N 1.28427 * 110.34294 * 359.97438 * 6 5 4 8 8 C 1.31550 * 110.49767 * 359.72492 * 7 6 5 9 9 S 1.76192 * 126.45381 * 180.28514 * 8 7 6 10 10 C 1.81001 * 99.99909 * 0.18330 * 9 8 7 11 11 C 1.50700 * 109.47108 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00274 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99805 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46895 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00135 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99749 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99924 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99686 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47531 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47069 * 119.99728 * 19 17 15 22 22 H 1.48500 * 109.47273 * 239.99684 * 19 17 15 23 23 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 24 24 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 25 25 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 26 26 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 27 27 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 28 28 H 1.09001 * 109.47277 * 300.00299 * 10 9 8 29 29 H 1.09001 * 109.47134 * 60.00256 * 10 9 8 30 30 H 0.97002 * 120.00657 * 359.97438 * 13 11 10 31 31 H 1.08988 * 109.47411 * 299.99909 * 14 13 11 32 32 H 1.09001 * 109.47024 * 60.00079 * 14 13 11 33 33 H 0.97001 * 119.99481 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 4.3235 0.8933 1.1603 6 7 4.7637 1.1029 2.3536 7 7 3.8465 1.6303 3.0816 8 6 2.7443 1.7987 2.3835 9 16 1.2327 2.4926 2.9648 10 6 1.6919 2.8564 4.6774 11 6 0.5179 3.4746 5.3918 12 8 -0.5267 3.6514 4.8014 13 7 0.6287 3.8311 6.6868 14 6 -0.5126 4.4326 7.3812 15 6 -0.1302 4.7354 8.8071 16 1 0.8633 4.5026 9.1609 17 6 -1.0491 5.3086 9.6604 18 7 -2.2591 5.5916 9.2297 19 14 -0.5754 5.6833 11.4280 20 1 0.8328 5.2731 11.6608 21 1 -0.7140 7.1403 11.6795 22 1 -1.4681 4.9349 12.3490 23 1 -0.5400 0.9353 -0.0045 24 1 -0.5400 -0.9353 0.0045 25 1 1.8500 -0.9353 0.0046 26 1 2.6252 1.4004 -0.9293 27 1 1.3582 2.1318 0.0846 28 1 1.9780 1.9329 5.1809 29 1 2.5315 3.5514 4.6886 30 1 1.4639 3.6894 7.1592 31 1 -0.7988 5.3558 6.8776 32 1 -1.3521 3.7374 7.3703 33 1 -2.9054 5.9952 9.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048873433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = 98.432123 kcal Electronic energy + Delta-G solvation = -18635.558211 eV Core-core repulsion = 15440.112860 eV Total energy + Delta-G solvation = -3195.445350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.01659 -39.00544 -36.69836 -34.40501 -33.25616 -32.57232 -32.36362 -30.20003 -27.84010 -26.93889 -23.86177 -23.33475 -22.66308 -20.62939 -20.08002 -18.57431 -17.26987 -16.95121 -16.81671 -16.00575 -15.54242 -15.38294 -15.31338 -14.64626 -14.34087 -14.09441 -13.63126 -13.12130 -13.09728 -12.77655 -12.29650 -12.11281 -12.07274 -11.80367 -11.40026 -11.16488 -11.03487 -10.96489 -10.86958 -10.66905 -10.39310 -10.11962 -9.51390 -9.44445 -8.85058 -8.20897 -8.04214 -6.24290 -4.31684 0.50297 0.67933 1.37639 1.64627 2.04705 2.19584 3.00127 3.20059 3.27679 3.30514 3.78587 3.90567 4.17742 4.29014 4.45455 4.61551 4.91381 4.98354 5.12016 5.12679 5.13153 5.17493 5.34137 5.36249 5.70843 6.00497 6.09395 7.13459 7.18011 7.38278 7.54227 7.86188 8.22805 8.37821 8.60158 8.84754 9.35015 10.85823 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.003091 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.853965 B = 9057.761445 C = 9759.400834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C 0.150 3.850 4 N -0.361 5.361 5 N -0.088 5.088 6 N -0.034 5.034 7 N -0.339 5.339 8 C 0.204 3.796 9 S 0.116 5.884 10 C -0.152 4.152 11 C 0.517 3.483 12 O -0.544 6.544 13 N -0.698 5.698 14 C 0.249 3.751 15 C -0.546 4.546 16 H 0.065 0.935 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.396 0.604 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -8.667 -17.431 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.214 4.214 3 C 0.029 3.971 4 N -0.160 5.160 5 N -0.075 5.075 6 N -0.029 5.029 7 N -0.195 5.195 8 C -0.181 4.181 9 S 0.341 5.659 10 C -0.304 4.304 11 C 0.299 3.701 12 O -0.424 6.424 13 N -0.346 5.346 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.229 0.771 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.250 -8.668 -18.169 21.079 hybrid contribution 0.965 0.074 1.494 1.780 sum 7.214 -8.594 -16.675 20.099 Atomic orbital electron populations 1.24123 0.95340 1.03361 0.95030 1.22986 0.96352 0.97541 1.04545 1.21175 0.90546 0.98360 0.86990 1.51610 1.10858 1.43850 1.09718 1.82431 0.89010 1.20187 1.15843 1.77828 1.20591 1.08016 0.96498 1.74968 0.96802 1.21310 1.26470 1.28389 1.03312 0.99916 0.86445 1.86475 0.99015 1.71144 1.09298 1.23993 1.03598 1.07569 0.95225 1.19399 0.87514 0.79788 0.83438 1.90717 1.29467 1.56049 1.66121 1.46401 1.18261 1.60396 1.09560 1.19230 0.83243 0.93635 0.91012 1.21242 0.99353 1.42812 0.94993 0.91653 1.24946 0.94691 0.95032 0.99277 1.69976 1.04418 1.41573 1.36208 0.86340 0.78683 0.78127 0.83661 1.19546 1.20752 1.20747 0.87386 0.87092 0.86251 0.86450 0.87061 0.85527 0.85538 0.77088 0.95113 0.95120 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 14.32 29.01 0.42 -0.40 16 2 C -0.19 -1.32 9.85 -36.03 -0.35 -1.67 16 3 C 0.15 1.07 6.81 -5.19 -0.04 1.04 16 4 N -0.36 -4.08 3.67 -62.48 -0.23 -4.31 16 5 N -0.09 -1.19 13.93 60.35 0.84 -0.35 16 6 N -0.03 -0.51 13.38 60.35 0.81 0.30 16 7 N -0.34 -4.97 11.57 30.50 0.35 -4.62 16 8 C 0.20 2.59 8.15 -89.16 -0.73 1.86 16 9 S 0.12 1.43 20.92 -107.50 -2.25 -0.82 16 10 C -0.15 -1.99 5.72 36.01 0.21 -1.78 16 11 C 0.52 9.25 7.85 -10.99 -0.09 9.17 16 12 O -0.54 -11.69 15.86 5.55 0.09 -11.60 16 13 N -0.70 -13.50 5.55 -61.47 -0.34 -13.84 16 14 C 0.25 6.22 5.43 -5.19 -0.03 6.19 16 15 C -0.55 -14.19 9.28 -34.44 -0.32 -14.51 16 16 H 0.07 1.59 7.60 -52.48 -0.40 1.19 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -25.22 13.29 55.43 0.74 -24.49 16 19 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.11 0.54 7.84 -52.49 -0.41 0.13 16 24 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 25 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 26 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.11 0.64 7.49 -51.93 -0.39 0.25 16 28 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.13 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.40 6.50 8.32 -40.82 -0.34 6.16 16 31 H 0.03 0.85 8.14 -51.94 -0.42 0.43 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -32.34 318.26 -4.88 -37.22 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.63 Total: 0.90 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.03 Total: 1.53 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 2.17 Total: -47.31 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.25 Total: -0.82 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.34 -4.88 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048873433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.654 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds