Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 N 1.40582 * 127.38637 * 90.02383 * 4 3 2 6 6 N 1.28903 * 106.83422 * 180.02562 * 5 4 3 7 7 N 1.28427 * 110.34294 * 359.97438 * 6 5 4 8 8 C 1.31550 * 110.49767 * 359.72492 * 7 6 5 9 9 S 1.76192 * 126.45381 * 180.28514 * 8 7 6 10 10 C 1.81001 * 99.99909 * 0.18330 * 9 8 7 11 11 C 1.50700 * 109.47108 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00274 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99805 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46895 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00135 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99749 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99924 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99686 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47531 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47069 * 119.99728 * 19 17 15 22 22 H 1.48500 * 109.47273 * 239.99684 * 19 17 15 23 23 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 24 24 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 25 25 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 26 26 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 27 27 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 28 28 H 1.09001 * 109.47277 * 300.00299 * 10 9 8 29 29 H 1.09001 * 109.47134 * 60.00256 * 10 9 8 30 30 H 0.97002 * 120.00657 * 359.97438 * 13 11 10 31 31 H 1.08988 * 109.47411 * 299.99909 * 14 13 11 32 32 H 1.09001 * 109.47024 * 60.00079 * 14 13 11 33 33 H 0.97001 * 119.99481 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 7 4.3235 0.8933 1.1603 6 7 4.7637 1.1029 2.3536 7 7 3.8465 1.6303 3.0816 8 6 2.7443 1.7987 2.3835 9 16 1.2327 2.4926 2.9648 10 6 1.6919 2.8564 4.6774 11 6 0.5179 3.4746 5.3918 12 8 -0.5267 3.6514 4.8014 13 7 0.6287 3.8311 6.6868 14 6 -0.5126 4.4326 7.3812 15 6 -0.1302 4.7354 8.8071 16 1 0.8633 4.5026 9.1609 17 6 -1.0491 5.3086 9.6604 18 7 -2.2591 5.5916 9.2297 19 14 -0.5754 5.6833 11.4280 20 1 0.8328 5.2731 11.6608 21 1 -0.7140 7.1403 11.6795 22 1 -1.4681 4.9349 12.3490 23 1 -0.5400 0.9353 -0.0045 24 1 -0.5400 -0.9353 0.0045 25 1 1.8500 -0.9353 0.0046 26 1 2.6252 1.4004 -0.9293 27 1 1.3582 2.1318 0.0846 28 1 1.9780 1.9329 5.1809 29 1 2.5315 3.5514 4.6886 30 1 1.4639 3.6894 7.1592 31 1 -0.7988 5.3558 6.8776 32 1 -1.3521 3.7374 7.3703 33 1 -2.9054 5.9952 9.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048873433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = 75.197769 kcal Electronic energy + Delta-G solvation = -18636.565728 eV Core-core repulsion = 15440.112860 eV Total energy + Delta-G solvation = -3196.452868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.01406 -40.57731 -37.39868 -36.21672 -34.41847 -33.97290 -33.45281 -31.56967 -28.83716 -28.49400 -24.95997 -24.47518 -24.27767 -21.67870 -21.14713 -19.66553 -18.71952 -18.03792 -17.73574 -17.60400 -17.13541 -16.72771 -16.21456 -16.03722 -15.47061 -15.03130 -14.65519 -14.62863 -14.29004 -14.00925 -13.91666 -13.55017 -13.04941 -12.88905 -12.74909 -12.71978 -12.40742 -12.22134 -12.11673 -11.89191 -11.50806 -11.44853 -11.07491 -10.81517 -10.62083 -9.92212 -9.12727 -8.28480 -6.43862 -0.50016 -0.28558 0.60074 0.71460 0.99790 1.45495 1.46025 1.53969 1.54490 1.59208 2.27890 2.47893 3.07419 3.11177 3.59121 3.66829 3.73406 3.94943 4.03058 4.10000 4.28073 4.39521 4.49080 4.84961 4.98411 5.10537 5.25840 5.43578 5.53154 5.58968 5.62935 5.84745 6.65202 6.73771 7.20327 7.20737 7.34855 8.83535 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.003091 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.853965 B = 9057.761445 C = 9759.400834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.207 4.207 3 C 0.139 3.861 4 N -0.349 5.349 5 N -0.093 5.093 6 N -0.057 5.057 7 N -0.355 5.355 8 C 0.201 3.799 9 S 0.134 5.866 10 C -0.145 4.145 11 C 0.520 3.480 12 O -0.582 6.582 13 N -0.695 5.695 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.980 3.020 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.413 0.587 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -9.050 -17.456 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.227 4.227 3 C 0.020 3.980 4 N -0.148 5.148 5 N -0.081 5.081 6 N -0.053 5.053 7 N -0.213 5.213 8 C -0.184 4.184 9 S 0.359 5.641 10 C -0.296 4.296 11 C 0.304 3.696 12 O -0.464 6.464 13 N -0.345 5.345 14 C 0.143 3.857 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.804 3.196 20 H -0.178 1.178 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.135 0.865 24 H 0.138 0.862 25 H 0.131 0.869 26 H 0.156 0.844 27 H 0.146 0.854 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.249 0.751 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.373 -9.075 -18.223 21.652 hybrid contribution 0.543 0.158 1.350 1.464 sum 7.916 -8.917 -16.873 20.661 Atomic orbital electron populations 1.24326 0.95082 1.04304 0.93264 1.22916 0.96630 0.97044 1.06083 1.21636 0.90591 0.99255 0.86498 1.51889 1.10450 1.42361 1.10148 1.82354 0.90112 1.20138 1.15447 1.77815 1.21296 1.09123 0.97079 1.74877 0.97314 1.21831 1.27256 1.28360 1.02974 1.00104 0.86940 1.86495 0.98323 1.71123 1.08200 1.23842 1.01428 1.08586 0.95754 1.20034 0.88296 0.78551 0.82696 1.90703 1.31556 1.57262 1.66832 1.46085 1.17514 1.60573 1.10332 1.18652 0.84196 0.91509 0.91354 1.21649 1.00134 1.42275 0.95291 0.89809 1.25976 0.94507 0.94752 1.04094 1.70119 1.05810 1.42715 1.38053 0.85174 0.79040 0.77727 0.77677 1.17795 1.20592 1.20584 0.86483 0.86181 0.86892 0.84422 0.85390 0.83481 0.83393 0.75112 0.98605 0.98624 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 14.32 67.78 0.97 -0.28 16 2 C -0.21 -2.43 9.85 25.64 0.25 -2.18 16 3 C 0.14 1.70 6.81 85.63 0.58 2.28 16 4 N -0.35 -7.29 3.67 -351.59 -1.29 -8.58 16 5 N -0.09 -2.41 13.93 37.02 0.52 -1.90 16 6 N -0.06 -1.69 13.38 37.02 0.50 -1.20 16 7 N -0.36 -9.90 11.57 -57.41 -0.66 -10.57 16 8 C 0.20 4.74 8.15 179.84 1.47 6.20 16 9 S 0.13 3.04 20.92 -56.49 -1.18 1.86 16 10 C -0.14 -3.50 5.72 71.24 0.41 -3.09 16 11 C 0.52 18.27 7.85 87.66 0.69 18.95 16 12 O -0.58 -25.16 15.86 -3.04 -0.05 -25.21 16 13 N -0.70 -26.63 5.55 -466.77 -2.59 -29.22 16 14 C 0.27 13.60 5.43 85.63 0.46 14.06 16 15 C -0.56 -28.81 9.28 25.60 0.24 -28.57 16 16 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 17 C 0.01 0.36 5.46 84.66 0.46 0.82 16 18 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 19 Si 0.98 41.15 29.54 68.60 2.03 43.18 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 H 0.12 0.90 7.84 -2.91 -0.02 0.88 16 24 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 25 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 26 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.13 1.14 7.49 -2.39 -0.02 1.12 16 28 H 0.15 3.05 8.14 -2.39 -0.02 3.04 16 29 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.41 12.92 8.32 -92.71 -0.77 12.15 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -70.74 318.26 3.45 -67.29 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.37 Total: 9.85 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.53 Total: 8.19 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.25 Total: -105.16 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.18 Total: 1.86 kcal Total: -70.74 3.45 -67.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048873433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.489 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds