Wall clock time and date at job start Wed Apr 15 2020 11:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46518 * 2 1 4 4 S 1.80994 * 109.47216 * 120.00091 * 2 1 3 5 5 C 1.76204 * 100.00119 * 295.00348 * 4 2 1 6 6 N 1.31547 * 126.45243 * 0.18432 * 5 4 2 7 7 N 1.28413 * 110.49883 * 180.28932 * 6 5 4 8 8 N 1.28901 * 110.34381 * 359.72103 * 7 6 5 9 9 N 1.35389 * 126.45457 * 180.02562 * 5 4 2 10 10 C 1.46501 * 127.38539 * 359.97438 * 9 5 4 11 11 C 1.53000 * 117.50040 * 239.71306 * 10 9 5 12 12 C 1.53002 * 60.02940 * 252.49639 * 11 10 9 13 13 C 1.50704 * 109.47016 * 240.00434 * 2 1 3 14 14 O 1.21293 * 119.99457 * 264.99397 * 13 2 1 15 15 N 1.34779 * 120.00048 * 84.99882 * 13 2 1 16 16 C 1.37091 * 119.99886 * 179.97438 * 15 13 2 17 17 H 1.08005 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00197 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00234 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99730 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47403 * 89.99404 * 20 18 16 22 22 H 1.48506 * 109.46453 * 209.99592 * 20 18 16 23 23 H 1.48505 * 109.46918 * 329.99150 * 20 18 16 24 24 H 1.09000 * 109.46993 * 60.00210 * 1 2 3 25 25 H 1.09003 * 109.46518 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47090 * 299.99832 * 1 2 3 27 27 H 1.09007 * 115.54992 * 25.38027 * 10 9 5 28 28 H 1.09002 * 117.49833 * 359.97438 * 11 10 9 29 29 H 1.09002 * 117.49953 * 144.99785 * 11 10 9 30 30 H 1.09000 * 117.49996 * 107.50493 * 12 11 10 31 31 H 1.08999 * 117.49664 * 252.51862 * 12 11 10 32 32 H 0.96996 * 119.99891 * 359.97438 * 15 13 2 33 33 H 0.96995 * 120.00179 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8532 1.4778 5 6 1.5439 0.2422 2.7257 6 7 0.8589 1.3488 2.5343 7 7 0.5923 1.9125 3.6569 8 7 1.0723 1.2190 4.6317 9 7 1.7081 0.1019 4.0623 10 6 2.4039 -0.9794 4.7644 11 6 1.5941 -1.8099 5.7621 12 6 2.6370 -0.8112 6.2678 13 6 2.0324 -0.7103 -1.2306 14 8 2.3209 -1.8872 -1.1760 15 7 2.1611 -0.0379 -2.3915 16 6 2.6185 -0.6840 -3.5107 17 1 2.8754 -1.7319 -3.4623 18 6 2.7507 0.0091 -4.7078 19 7 3.1897 -0.6101 -5.7805 20 14 2.3057 1.8214 -4.7917 21 1 3.5026 2.6403 -4.4726 22 1 1.8304 2.1514 -6.1594 23 1 1.2303 2.1130 -3.8101 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1743 -1.4937 4.1898 28 1 0.5437 -1.5515 5.8964 29 1 1.8317 -2.8705 5.8439 30 1 2.2727 0.1039 6.7347 31 1 3.5609 -1.2149 6.6820 32 1 1.9300 0.9031 -2.4351 33 1 3.2823 -0.1262 -6.6160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299625697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:35 Heat of formation + Delta-G solvation = 93.927487 kcal Electronic energy + Delta-G solvation = -19362.307414 eV Core-core repulsion = 16166.666728 eV Total energy + Delta-G solvation = -3195.640686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -44.03291 -40.51324 -38.70352 -36.17602 -34.60801 -34.22876 -33.68059 -32.99652 -27.46150 -26.50632 -25.10658 -24.56252 -23.46902 -22.73308 -21.46174 -20.57313 -19.31187 -18.12458 -17.95650 -17.65661 -16.85201 -16.31805 -16.11877 -15.92946 -15.34927 -14.83268 -14.62307 -14.54928 -14.20351 -13.92501 -13.66824 -13.24001 -13.16172 -13.08102 -12.96842 -12.58757 -12.46251 -12.25641 -12.05688 -11.97960 -11.69381 -11.60651 -11.57507 -10.96645 -10.65573 -10.34549 -9.12924 -8.46824 -6.08962 -0.46924 -0.31924 0.60142 0.92302 0.97730 1.30131 1.33336 1.42938 1.76217 2.19019 2.50027 2.62984 3.06437 3.08811 3.43681 3.64168 3.74754 3.77145 3.80365 4.03013 4.06030 4.21412 4.47947 4.63781 4.64172 4.73985 4.90195 5.07245 5.10886 5.13704 5.44753 5.85812 6.44481 6.75077 7.19821 7.24513 7.72606 8.69218 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.004041 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.719871 B = 6928.110144 C = 7459.756240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.133 0.867 4 S 0.124 5.876 5 C 0.204 3.796 6 N -0.349 5.349 7 N -0.057 5.057 8 N -0.094 5.094 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.152 4.152 12 C -0.140 4.140 13 C 0.470 3.530 14 O -0.605 6.605 15 N -0.569 5.569 16 C -0.330 4.330 17 H 0.067 0.933 18 C -0.002 4.002 19 N -0.921 5.921 20 Si 0.952 3.048 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.232 1.232 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.102 0.898 31 H 0.147 0.853 32 H 0.391 0.609 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 2.484 21.719 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.234 4.234 3 H 0.151 0.849 4 S 0.350 5.650 5 C -0.180 4.180 6 N -0.207 5.207 7 N -0.053 5.053 8 N -0.081 5.081 9 N -0.123 5.123 10 C -0.080 4.080 11 C -0.190 4.190 12 C -0.178 4.178 13 C 0.255 3.745 14 O -0.490 6.490 15 N -0.208 5.208 16 C -0.459 4.459 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.772 3.228 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.156 1.156 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.190 0.810 28 H 0.112 0.888 29 H 0.164 0.836 30 H 0.120 0.880 31 H 0.165 0.835 32 H 0.227 0.773 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.401 1.880 22.076 22.286 hybrid contribution -0.313 1.254 -0.997 1.633 sum -2.714 3.134 21.078 21.482 Atomic orbital electron populations 1.22013 0.88865 1.03820 1.04946 1.23525 1.02998 1.03959 0.92914 0.84875 1.86363 1.65586 1.22363 0.90717 1.28179 0.99709 0.99578 0.90538 1.74867 1.19381 1.06979 1.19427 1.77810 1.13964 1.20107 0.93379 1.82297 1.12873 0.94287 1.18648 1.51164 1.38946 1.18994 1.03230 1.22859 1.01664 0.90484 0.93001 1.23643 0.97945 0.99795 0.97638 1.23547 1.02874 1.01862 0.89517 1.19443 0.83651 0.87152 0.84228 1.90592 1.55786 1.17441 1.85210 1.41897 1.58614 1.11873 1.08445 1.19043 1.42550 0.96800 0.87545 0.91497 1.26000 0.96013 1.04484 0.93824 1.69763 1.45102 1.39549 1.01661 0.85544 0.80380 0.77081 0.79821 1.18068 1.19659 1.15569 0.89800 0.91431 0.89413 0.80966 0.88833 0.83576 0.87975 0.83503 0.77280 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.99 71.98 0.65 -3.24 16 2 C -0.10 -3.21 2.69 29.85 0.08 -3.13 16 3 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 4 S 0.12 3.52 20.71 -56.49 -1.17 2.35 16 5 C 0.20 5.60 7.84 179.84 1.41 7.01 16 6 N -0.35 -10.65 9.70 -57.41 -0.56 -11.21 16 7 N -0.06 -1.79 13.38 37.02 0.50 -1.29 16 8 N -0.09 -2.60 13.45 37.02 0.50 -2.10 16 9 N -0.33 -7.80 4.01 -327.17 -1.31 -9.12 16 10 C 0.02 0.34 6.74 45.01 0.30 0.64 16 11 C -0.15 -1.58 10.45 30.60 0.32 -1.26 16 12 C -0.14 -1.40 10.23 30.62 0.31 -1.08 16 13 C 0.47 20.17 6.90 87.66 0.61 20.78 16 14 O -0.60 -31.00 15.71 -3.07 -0.05 -31.05 16 15 N -0.57 -25.74 5.09 -306.98 -1.56 -27.30 16 16 C -0.33 -18.38 10.16 84.04 0.85 -17.53 16 17 H 0.07 4.40 7.39 -2.91 -0.02 4.38 16 18 C 0.00 -0.13 5.50 84.93 0.47 0.34 16 19 N -0.92 -53.20 13.96 21.66 0.30 -52.89 16 20 Si 0.95 37.38 27.74 68.60 1.90 39.28 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.37 5.90 -2.39 -0.01 2.36 16 27 H 0.17 2.06 8.07 -2.38 -0.02 2.04 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.32 7.91 -2.39 -0.02 1.30 16 31 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.39 14.93 5.76 -92.71 -0.53 14.40 16 33 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -71.88 306.19 4.12 -67.76 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.57 Total: 23.06 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.00 Total: 2.52 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -2.14 Total: -103.92 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.90 Total: 39.28 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.17 Total: 2.35 kcal Total: -71.88 4.12 -67.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299625697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.688 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds