Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38229 * 119.99934 * 2 1 4 4 C 1.38243 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.99856 * 0.02562 * 4 3 2 6 6 S 1.76205 * 119.99711 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40120 * 336.45626 * 6 5 4 8 8 O 1.42103 * 106.40225 * 203.53771 * 6 5 4 9 9 N 1.65599 * 107.21913 * 89.99833 * 6 5 4 10 10 C 1.46506 * 119.99791 * 89.99801 * 9 6 5 11 11 C 1.46501 * 120.00111 * 270.00122 * 9 6 5 12 12 C 1.53001 * 109.46892 * 264.99830 * 11 9 6 13 13 C 1.50694 * 109.46736 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00881 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00345 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99881 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47163 * 90.00140 * 17 15 13 19 19 H 1.48504 * 109.47230 * 210.00039 * 17 15 13 20 20 H 1.48500 * 109.47062 * 329.99668 * 17 15 13 21 21 C 1.38237 * 120.00290 * 0.25075 * 5 4 3 22 22 C 1.38233 * 119.99692 * 359.47118 * 21 5 4 23 23 H 1.08998 * 109.47567 * 89.99952 * 1 2 3 24 24 H 1.09000 * 109.47044 * 209.99881 * 1 2 3 25 25 H 1.08995 * 109.47182 * 329.99994 * 1 2 3 26 26 H 1.07995 * 119.99963 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99461 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47060 * 90.00564 * 10 9 6 29 29 H 1.09004 * 109.47073 * 210.00053 * 10 9 6 30 30 H 1.09000 * 109.47212 * 330.00135 * 10 9 6 31 31 H 1.09001 * 109.47135 * 24.99777 * 11 9 6 32 32 H 1.09001 * 109.46893 * 145.00071 * 11 9 6 33 33 H 1.09001 * 109.47188 * 299.99915 * 12 11 9 34 34 H 1.08997 * 109.47202 * 59.99921 * 12 11 9 35 35 H 0.96999 * 120.00095 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.99936 * 179.73300 * 21 5 4 37 37 H 1.07999 * 119.99752 * 180.26893 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2716 -0.0001 0.0005 6 16 6.0337 -0.0001 0.0005 7 8 6.4349 1.2496 -0.5440 8 8 6.4349 -1.2498 -0.5439 9 7 6.5239 0.0000 1.5823 10 6 6.7407 -1.2688 2.2820 11 6 6.7407 1.2687 2.2820 12 6 8.2211 1.6475 2.2042 13 6 8.4440 2.9529 2.9233 14 1 7.6131 3.4613 3.3897 15 6 9.7088 3.4982 2.9860 16 7 9.9033 4.6377 3.6132 17 14 11.1461 2.6185 2.1801 18 1 11.2858 3.0818 0.7761 19 1 12.3934 2.9205 2.9274 20 1 10.9019 1.1538 2.1961 21 6 3.5804 -1.1972 -0.0052 22 6 2.1981 -1.1972 0.0000 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6581 2.1324 -0.0004 27 1 4.1205 2.1324 0.0001 28 1 7.7761 -1.5835 2.1514 29 1 6.5318 -1.1384 3.3439 30 1 6.0755 -2.0284 1.8714 31 1 6.1409 2.0491 1.8136 32 1 6.4473 1.1624 3.3264 33 1 8.8209 0.8671 2.6725 34 1 8.5145 1.7537 1.1598 35 1 10.7932 5.0211 3.6576 36 1 4.1205 -2.1325 -0.0096 37 1 1.6581 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001656262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -52.864876 kcal Electronic energy + Delta-G solvation = -20229.378460 eV Core-core repulsion = 17098.619972 eV Total energy + Delta-G solvation = -3130.758488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.47239 -37.03858 -36.33172 -35.56324 -33.22516 -32.86505 -31.21594 -30.26985 -27.50420 -26.49425 -24.03330 -23.02389 -22.02044 -20.76603 -18.97602 -17.69994 -17.26812 -16.70276 -15.99935 -15.56104 -15.15685 -14.68010 -14.28057 -14.14640 -13.92657 -13.71940 -13.57121 -13.29141 -12.63066 -12.56846 -12.52463 -12.35939 -12.23617 -11.82573 -11.79130 -11.61975 -11.41928 -11.32994 -10.92614 -10.72218 -10.44966 -9.96440 -9.79040 -9.29667 -9.22639 -9.20589 -8.56394 -8.51062 -6.03087 -4.01563 0.48449 0.77432 1.14081 3.08179 3.36544 3.42951 3.44791 3.47366 3.99742 4.36701 4.48986 4.50617 4.62409 4.73904 5.03235 5.04299 5.13484 5.21067 5.32011 5.39132 5.40741 5.63595 5.67385 5.74695 5.78925 5.96164 5.99185 6.01467 6.22835 6.23802 6.33068 6.59328 6.68190 6.78111 7.30233 7.40389 7.79685 8.50818 8.99502 9.59510 11.09922 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.004620 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.083282 B = 6059.191840 C = 6510.175512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.143 4.143 4 C -0.013 4.013 5 C -0.680 4.680 6 S 2.685 3.315 7 O -0.943 6.943 8 O -0.965 6.965 9 N -0.999 5.999 10 C 0.097 3.903 11 C 0.136 3.864 12 C -0.032 4.032 13 C -0.519 4.519 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.876 3.124 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.019 4.019 22 C -0.146 4.146 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.138 0.862 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -12.739 -5.576 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 C -0.162 4.162 4 C -0.032 4.032 5 C -0.765 4.765 6 S 2.774 3.226 7 O -0.934 6.934 8 O -0.956 6.956 9 N -0.838 5.838 10 C -0.048 4.048 11 C 0.012 3.988 12 C -0.071 4.071 13 C -0.558 4.558 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.038 4.038 22 C -0.165 4.165 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.161 0.839 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.262 -12.617 -6.226 22.269 hybrid contribution 0.124 -0.312 -0.033 0.338 sum -17.138 -12.929 -6.259 22.361 Atomic orbital electron populations 1.20920 0.90726 1.03349 1.02840 1.20248 0.96364 0.93390 0.93781 1.21202 0.94225 0.97974 1.02776 1.21038 0.94695 0.96978 0.90512 1.31267 1.28162 0.99380 1.17737 1.02278 0.73713 0.73657 0.72941 1.93624 1.80426 1.43266 1.76050 1.93538 1.81068 1.44335 1.76632 1.57493 1.81392 1.13175 1.31766 1.21423 1.01648 0.83606 0.98151 1.21523 0.99908 0.80734 0.96618 1.19987 0.91866 0.97506 0.97712 1.20949 0.95607 1.04568 1.34662 0.90760 1.24958 0.98793 0.94646 0.94746 1.69902 1.22555 1.18529 1.43113 0.86828 0.81975 0.80924 0.79930 1.20010 1.21359 1.18961 1.20913 0.94639 0.96585 0.91705 1.21140 0.94172 0.97856 1.03334 0.90501 0.91075 0.90952 0.85038 0.83856 0.92302 0.90772 0.91905 0.90690 0.90738 0.96033 0.96031 0.92689 0.84427 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.04 -0.37 5.88 -104.63 -0.62 -0.98 16 3 C -0.14 -1.56 9.70 -39.58 -0.38 -1.94 16 4 C -0.01 -0.17 9.52 -39.58 -0.38 -0.55 16 5 C -0.68 -9.51 5.97 -39.59 -0.24 -9.75 16 6 S 2.68 45.42 5.60 -107.50 -0.60 44.82 16 7 O -0.94 -19.18 16.25 -57.17 -0.93 -20.11 16 8 O -0.97 -17.32 16.35 -57.17 -0.93 -18.26 16 9 N -1.00 -16.58 3.18 -121.75 -0.39 -16.97 16 10 C 0.10 1.30 10.33 59.85 0.62 1.92 16 11 C 0.14 2.62 5.30 -4.04 -0.02 2.60 16 12 C -0.03 -0.77 4.36 -27.89 -0.12 -0.89 16 13 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.79 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 17 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 18 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 21 C -0.02 -0.23 9.52 -39.58 -0.38 -0.61 16 22 C -0.15 -1.47 9.70 -39.58 -0.38 -1.86 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.14 1.86 7.62 -52.49 -0.40 1.47 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 30 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 31 H 0.07 1.42 7.61 -51.93 -0.40 1.02 16 32 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.14 1.45 7.61 -52.48 -0.40 1.05 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 325.19 15.07 4.90 4.90 Total: -1.00 -34.93 325.19 -9.13 -44.06 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.31 Total: -3.38 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -1.97 Total: -25.61 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.39 Total: -44.06 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.86 Total: -38.37 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.60 Total: 44.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.93 -9.13 -44.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001656262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.805 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds