Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38229 * 119.99934 * 2 1 4 4 C 1.38243 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.99856 * 0.02562 * 4 3 2 6 6 S 1.76205 * 119.99711 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40120 * 336.45626 * 6 5 4 8 8 O 1.42103 * 106.40225 * 203.53771 * 6 5 4 9 9 N 1.65599 * 107.21913 * 89.99833 * 6 5 4 10 10 C 1.46506 * 119.99791 * 89.99801 * 9 6 5 11 11 C 1.46501 * 120.00111 * 270.00122 * 9 6 5 12 12 C 1.53001 * 109.46892 * 264.99830 * 11 9 6 13 13 C 1.50694 * 109.46736 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00881 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00345 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99881 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47163 * 90.00140 * 17 15 13 19 19 H 1.48504 * 109.47230 * 210.00039 * 17 15 13 20 20 H 1.48500 * 109.47062 * 329.99668 * 17 15 13 21 21 C 1.38237 * 120.00290 * 0.25075 * 5 4 3 22 22 C 1.38233 * 119.99692 * 359.47118 * 21 5 4 23 23 H 1.08998 * 109.47567 * 89.99952 * 1 2 3 24 24 H 1.09000 * 109.47044 * 209.99881 * 1 2 3 25 25 H 1.08995 * 109.47182 * 329.99994 * 1 2 3 26 26 H 1.07995 * 119.99963 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99461 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47060 * 90.00564 * 10 9 6 29 29 H 1.09004 * 109.47073 * 210.00053 * 10 9 6 30 30 H 1.09000 * 109.47212 * 330.00135 * 10 9 6 31 31 H 1.09001 * 109.47135 * 24.99777 * 11 9 6 32 32 H 1.09001 * 109.46893 * 145.00071 * 11 9 6 33 33 H 1.09001 * 109.47188 * 299.99915 * 12 11 9 34 34 H 1.08997 * 109.47202 * 59.99921 * 12 11 9 35 35 H 0.96999 * 120.00095 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.99936 * 179.73300 * 21 5 4 37 37 H 1.07999 * 119.99752 * 180.26893 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2716 -0.0001 0.0005 6 16 6.0337 -0.0001 0.0005 7 8 6.4349 1.2496 -0.5440 8 8 6.4349 -1.2498 -0.5439 9 7 6.5239 0.0000 1.5823 10 6 6.7407 -1.2688 2.2820 11 6 6.7407 1.2687 2.2820 12 6 8.2211 1.6475 2.2042 13 6 8.4440 2.9529 2.9233 14 1 7.6131 3.4613 3.3897 15 6 9.7088 3.4982 2.9860 16 7 9.9033 4.6377 3.6132 17 14 11.1461 2.6185 2.1801 18 1 11.2858 3.0818 0.7761 19 1 12.3934 2.9205 2.9274 20 1 10.9019 1.1538 2.1961 21 6 3.5804 -1.1972 -0.0052 22 6 2.1981 -1.1972 0.0000 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6581 2.1324 -0.0004 27 1 4.1205 2.1324 0.0001 28 1 7.7761 -1.5835 2.1514 29 1 6.5318 -1.1384 3.3439 30 1 6.0755 -2.0284 1.8714 31 1 6.1409 2.0491 1.8136 32 1 6.4473 1.1624 3.3264 33 1 8.8209 0.8671 2.6725 34 1 8.5145 1.7537 1.1598 35 1 10.7932 5.0211 3.6576 36 1 4.1205 -2.1325 -0.0096 37 1 1.6581 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001656262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -76.769759 kcal Electronic energy + Delta-G solvation = -20230.415053 eV Core-core repulsion = 17098.619972 eV Total energy + Delta-G solvation = -3131.795082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31296 -38.44567 -37.77090 -36.97687 -34.97206 -33.99453 -32.15441 -32.05698 -28.21249 -27.97736 -25.68064 -23.88260 -22.88771 -22.62885 -20.18516 -19.14885 -18.81718 -18.35203 -17.23027 -16.51147 -16.33027 -16.22914 -15.51996 -15.38381 -15.06563 -14.88908 -14.72594 -14.56263 -14.48352 -13.72735 -13.48437 -13.29397 -13.25903 -13.23636 -13.12275 -13.10376 -12.82145 -12.78861 -12.17448 -12.12344 -11.91542 -11.78411 -11.65311 -11.42364 -10.76634 -10.14693 -10.07320 -9.92864 -8.30019 -6.32765 -0.71032 -0.22591 0.28358 1.33379 1.35585 1.45892 1.90328 2.34963 2.48130 2.75034 3.05808 3.20540 3.74751 3.80350 3.85674 3.91829 4.27835 4.33125 4.41250 4.53186 4.64271 4.68247 4.68301 4.81100 4.88459 4.90485 4.98822 5.02545 5.06765 5.08743 5.23493 5.24825 5.41924 5.46374 5.58280 5.74357 5.86895 6.25132 6.73792 7.31637 8.85996 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.004620 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.083282 B = 6059.191840 C = 6510.175512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.687 4.687 6 S 2.689 3.311 7 O -0.990 6.990 8 O -0.981 6.981 9 N -1.001 6.001 10 C 0.084 3.916 11 C 0.146 3.854 12 C -0.032 4.032 13 C -0.525 4.525 14 H 0.048 0.952 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.934 3.066 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.249 1.249 21 C -0.029 4.029 22 C -0.144 4.144 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.132 0.868 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.028 -15.094 -5.777 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.167 4.167 4 C -0.056 4.056 5 C -0.777 4.777 6 S 2.784 3.216 7 O -0.980 6.980 8 O -0.972 6.972 9 N -0.840 5.840 10 C -0.060 4.060 11 C 0.021 3.979 12 C -0.071 4.071 13 C -0.564 4.564 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.758 3.242 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.172 1.172 21 C -0.048 4.048 22 C -0.162 4.162 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.171 0.829 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.331 -14.999 -6.423 25.297 hybrid contribution 0.588 0.418 0.031 0.722 sum -18.743 -14.581 -6.392 24.592 Atomic orbital electron populations 1.21018 0.87932 1.04717 1.04041 1.20727 0.98364 0.92709 0.91407 1.21507 0.93244 0.99774 1.02178 1.21119 0.96060 0.96402 0.92019 1.30638 1.25410 1.00799 1.20889 1.01700 0.74867 0.72405 0.72651 1.93561 1.82177 1.45140 1.77170 1.93503 1.82268 1.44439 1.76967 1.57337 1.82003 1.13214 1.31403 1.21743 1.02184 0.82707 0.99371 1.21206 0.96540 0.82163 0.98001 1.19947 0.95537 0.95642 0.95946 1.21295 0.94873 1.06041 1.34198 0.93406 1.25825 1.01800 0.95431 0.95476 1.70026 1.23452 1.20213 1.44856 0.85902 0.78899 0.80654 0.78765 1.20056 1.20162 1.17210 1.21187 0.95854 0.96135 0.91639 1.21565 0.93391 0.99515 1.01779 0.89148 0.89376 0.90031 0.82915 0.85028 0.92809 0.88777 0.89213 0.91091 0.88881 0.95293 0.97596 0.92423 0.83193 0.81877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.03 -0.51 5.88 -19.87 -0.12 -0.63 16 3 C -0.15 -2.95 9.70 22.27 0.22 -2.73 16 4 C -0.04 -0.96 9.52 22.27 0.21 -0.75 16 5 C -0.69 -18.80 5.97 22.27 0.13 -18.66 16 6 S 2.69 91.68 5.60 -56.49 -0.32 91.36 16 7 O -0.99 -41.92 16.25 -128.00 -2.08 -44.00 16 8 O -0.98 -34.94 16.35 -128.00 -2.09 -37.03 16 9 N -1.00 -32.68 3.18 -539.09 -1.72 -34.40 16 10 C 0.08 2.10 10.33 127.77 1.32 3.42 16 11 C 0.15 5.63 5.30 86.38 0.46 6.09 16 12 C -0.03 -1.54 4.36 29.85 0.13 -1.41 16 13 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 14 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 15 C 0.01 0.73 5.47 84.65 0.46 1.19 16 16 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 17 Si 0.93 46.16 27.47 68.60 1.88 48.04 16 18 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 21 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 22 C -0.14 -2.38 9.70 22.27 0.22 -2.17 16 23 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 0.50 8.09 -2.39 -0.02 0.48 16 25 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 26 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 27 H 0.13 3.63 7.62 -2.91 -0.02 3.60 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.96 7.94 -2.38 -0.02 1.94 16 30 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 31 H 0.07 2.77 7.61 -2.39 -0.02 2.75 16 32 H 0.09 3.23 7.96 -2.39 -0.02 3.21 16 33 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 34 H 0.01 0.29 7.57 -2.39 -0.02 0.28 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.15 2.79 7.61 -2.91 -0.02 2.77 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -77.02 325.19 1.17 -75.85 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.99 Total: 6.24 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 4.20 Total: -46.68 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -1.42 Total: -93.78 kcal Atomic # 8 Polarization: -76.86 SS G_CDS: -4.17 Total: -81.03 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Atomic # 16 Polarization: 91.68 SS G_CDS: -0.32 Total: 91.36 kcal Total: -77.02 1.17 -75.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001656262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.924 kcal (2) G-P(sol) polarization free energy of solvation -77.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds