Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46905 * 109.47105 * 92.95044 * 3 2 1 5 5 C 1.47851 * 110.99535 * 293.18185 * 4 3 2 6 6 C 1.54902 * 104.79268 * 213.63590 * 5 4 3 7 7 C 1.55146 * 101.65652 * 37.07116 * 6 5 4 8 8 C 1.47444 * 111.00123 * 172.34132 * 4 3 2 9 9 H 1.08998 * 109.88835 * 242.82600 * 8 4 3 10 10 C 1.52999 * 109.88592 * 3.84850 * 8 4 3 11 11 O 1.45209 * 109.47203 * 65.99925 * 10 8 4 12 12 C 1.34230 * 116.99793 * 179.97438 * 11 10 8 13 13 O 1.20827 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99583 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.46875 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99928 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99734 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00052 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99947 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99670 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46972 * 90.00328 * 20 18 16 22 22 H 1.48503 * 109.46934 * 209.99712 * 20 18 16 23 23 H 1.48497 * 109.47460 * 329.99636 * 20 18 16 24 24 H 4.40888 * 5.52201 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46760 * 212.94599 * 3 2 1 26 26 H 1.08994 * 109.47577 * 332.94590 * 3 2 1 27 27 H 1.08997 * 110.37233 * 332.46446 * 5 4 3 28 28 H 1.08998 * 110.37281 * 94.81275 * 5 4 3 29 29 H 1.08999 * 110.99509 * 278.98001 * 6 5 4 30 30 H 1.08999 * 111.02234 * 155.17820 * 6 5 4 31 31 H 1.08993 * 110.71049 * 205.96233 * 7 6 5 32 32 H 1.09004 * 110.70238 * 82.72472 * 7 6 5 33 33 H 1.08997 * 109.47009 * 185.99719 * 10 8 4 34 34 H 1.09001 * 109.47461 * 306.00216 * 10 8 4 35 35 H 1.09003 * 109.47015 * 299.99230 * 14 12 11 36 36 H 1.08992 * 109.47390 * 59.99980 * 14 12 11 37 37 H 0.96998 * 119.99325 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 0.0722 -1.3832 5 6 2.8005 -1.1602 -2.1282 6 6 3.9836 -1.3648 -3.1068 7 6 5.1877 -0.9037 -2.2439 8 6 4.5979 0.2583 -1.4172 9 1 4.8396 1.2113 -1.8876 10 6 5.1603 0.2229 0.0053 11 8 4.9803 -1.1053 0.5640 12 6 5.4239 -1.3054 1.8150 13 8 5.9448 -0.4006 2.4233 14 6 5.2721 -2.6584 2.4608 15 16 5.9610 -2.6091 4.1339 16 6 5.6579 -4.2698 4.6387 17 1 5.1747 -4.9599 3.9629 18 6 6.0401 -4.6910 5.9049 19 7 5.8131 -5.9315 6.2822 20 14 6.8751 -3.4970 7.0739 21 1 5.8467 -2.8000 7.8875 22 1 7.7937 -4.2433 7.9709 23 1 7.6487 -2.4987 6.2928 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8633 0.5589 26 1 3.0098 -0.9143 0.4674 27 1 2.7217 -2.0065 -1.4458 28 1 1.8699 -1.0286 -2.6802 29 1 3.8730 -0.7361 -3.9903 30 1 4.0827 -2.4137 -3.3866 31 1 6.0028 -0.5519 -2.8761 32 1 5.5247 -1.7089 -1.5910 33 1 6.2224 0.4664 -0.0177 34 1 4.6338 0.9510 0.6224 35 1 4.2152 -2.9205 2.5112 36 1 5.8037 -3.4046 1.8705 37 1 6.0806 -6.2259 7.1669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490616747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = -17.218019 kcal Electronic energy + Delta-G solvation = -19892.191019 eV Core-core repulsion = 16762.978294 eV Total energy + Delta-G solvation = -3129.212725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77917 -39.19856 -36.16004 -34.15080 -32.52768 -31.62545 -30.96554 -29.62183 -26.25476 -25.77153 -25.38335 -21.74648 -21.37189 -20.08433 -18.45388 -18.00812 -17.38567 -16.71840 -16.16644 -15.95356 -15.33976 -15.07103 -14.94986 -14.26661 -14.16455 -13.59860 -13.27364 -13.12433 -12.94424 -12.76465 -12.31053 -12.05315 -11.96920 -11.38576 -11.35156 -11.16007 -11.08318 -10.96524 -10.77765 -10.74354 -10.49730 -10.26940 -10.08975 -9.91509 -9.08950 -8.66793 -8.55585 -7.06792 -6.36918 -4.11681 2.31264 2.43522 2.64073 2.80392 3.04689 3.26623 3.42326 3.47440 3.81149 4.23063 4.24722 4.33762 4.46830 4.60409 4.64546 4.91680 4.94274 5.01927 5.04937 5.16434 5.27699 5.35080 5.38321 5.52321 5.57949 5.63246 5.69893 5.72904 5.81720 5.88513 5.91231 6.06356 6.46390 6.67512 6.72080 7.56981 7.85818 7.93916 8.34329 9.08113 10.72157 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.003905 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.107662 B = 7169.155855 C = 7465.228796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.139 3.861 4 N -0.518 5.518 5 C 0.043 3.957 6 C -0.127 4.127 7 C -0.138 4.138 8 C 0.076 3.924 9 H 0.110 0.890 10 C 0.040 3.960 11 O -0.356 6.356 12 C 0.476 3.524 13 O -0.486 6.486 14 C -0.100 4.100 15 S -0.138 6.138 16 C -0.524 4.524 17 H 0.091 0.909 18 C 0.098 3.902 19 N -0.876 5.876 20 Si 0.856 3.144 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.236 1.236 24 H 0.216 0.784 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 11.072 -17.864 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.175 4.175 3 C 0.013 3.987 4 N -0.243 5.243 5 C -0.084 4.084 6 C -0.165 4.165 7 C -0.177 4.177 8 C -0.032 4.032 9 H 0.127 0.873 10 C -0.035 4.035 11 O -0.275 6.275 12 C 0.317 3.683 13 O -0.372 6.372 14 C -0.248 4.248 15 S 0.088 5.912 16 C -0.671 4.671 17 H 0.109 0.891 18 C -0.111 4.111 19 N -0.512 5.512 20 Si 0.680 3.320 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.160 1.160 24 H 0.233 0.767 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.407 12.513 -17.219 21.738 hybrid contribution -0.070 -1.287 0.475 1.373 sum -4.478 11.227 -16.744 20.651 Atomic orbital electron populations 1.24845 0.95828 1.01761 0.99845 1.22912 0.94157 0.99860 1.00591 1.19648 0.85051 1.03363 0.90622 1.63750 1.11144 1.36797 1.12563 1.23072 0.98714 0.90736 0.95874 1.22670 0.94173 1.01697 0.97997 1.22834 0.98189 0.98264 0.98390 1.22699 0.87034 1.00646 0.92795 0.87266 1.23671 1.02532 0.82716 0.94557 1.86567 1.74943 1.34906 1.31054 1.23299 0.74762 0.90911 0.79310 1.90676 1.39233 1.44272 1.62977 1.23021 1.06897 0.93326 1.01588 1.84816 1.78642 1.19269 1.08499 1.22254 1.46698 0.93835 1.04312 0.89078 1.24689 0.94318 0.95055 0.97037 1.69929 1.45162 1.15734 1.20417 0.86756 0.80972 0.82083 0.82152 1.19090 1.19738 1.15977 0.76686 0.88584 0.89715 0.92802 0.90347 0.90792 0.90571 0.90554 0.89791 0.90269 0.90045 0.87345 0.87201 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 19.25 29.55 0.57 -1.69 16 2 C -0.17 -2.20 12.97 -37.12 -0.48 -2.68 16 3 C 0.14 1.67 4.10 -6.61 -0.03 1.64 16 4 N -0.52 -5.55 5.16 -226.83 -1.17 -6.72 16 5 C 0.04 0.43 6.08 -2.30 -0.01 0.42 16 6 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 7 C -0.14 -1.19 6.36 -24.91 -0.16 -1.35 16 8 C 0.08 0.71 3.85 -66.73 -0.26 0.45 16 9 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.04 0.45 4.39 37.16 0.16 0.61 16 11 O -0.36 -4.86 6.42 -39.26 -0.25 -5.11 16 12 C 0.48 8.16 7.97 36.00 0.29 8.45 16 13 O -0.49 -9.65 15.61 -18.75 -0.29 -9.94 16 14 C -0.10 -1.89 6.27 36.00 0.23 -1.67 16 15 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 16 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 17 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -25.95 13.97 55.49 0.78 -25.17 16 20 Si 0.86 21.19 27.74 -169.99 -4.72 16.47 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 24 H 0.22 1.59 7.80 -54.09 -0.42 1.17 16 25 H 0.10 1.12 6.07 -51.93 -0.32 0.80 16 26 H 0.09 1.12 5.57 -51.93 -0.29 0.83 16 27 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.85 6.90 -51.93 -0.36 0.49 16 33 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.08 0.92 6.00 -51.93 -0.31 0.61 16 35 H 0.11 1.93 8.14 -51.91 -0.42 1.50 16 36 H 0.11 1.94 8.14 -51.92 -0.42 1.51 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -31.72 323.73 -7.47 -39.20 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.05 Total: 0.47 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.35 Total: -8.70 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: -0.39 Total: -31.90 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.54 Total: -15.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.72 Total: 16.47 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.72 -7.47 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490616747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.979 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds