Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48502 * 109.46901 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47446 * 300.00013 * 3 2 1 6 6 H 1.48502 * 109.46947 * 60.00073 * 3 2 1 7 7 C 1.38811 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65160 * 0.05549 * 9 7 2 11 11 C 1.54908 * 104.83301 * 204.08079 * 10 9 7 12 12 H 1.08999 * 111.03527 * 81.08182 * 11 10 9 13 13 N 1.46508 * 111.00280 * 204.91730 * 11 10 9 14 14 C 1.34769 * 124.17430 * 232.18153 * 13 11 10 15 15 O 1.21233 * 127.15967 * 0.06636 * 14 13 11 16 16 C 1.51580 * 105.68335 * 179.81840 * 14 13 11 17 17 N 1.47318 * 103.59365 * 0.33419 * 16 14 13 18 18 C 1.33788 * 124.17795 * 52.22489 * 13 11 10 19 19 O 1.21541 * 123.76957 * 359.95658 * 18 13 11 20 20 C 1.55157 * 101.58364 * 322.98926 * 11 10 9 21 21 C 1.47022 * 125.64533 * 180.02562 * 9 7 2 22 22 H 1.09002 * 110.01421 * 59.50274 * 21 9 7 23 23 C 1.50696 * 109.88401 * 298.40659 * 21 9 7 24 24 O 1.20825 * 120.00016 * 342.19051 * 23 21 9 25 25 O 1.34230 * 120.00355 * 162.19296 * 23 21 9 26 26 H 0.96995 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.09010 * 110.36568 * 85.24136 * 10 9 7 28 28 H 1.08995 * 110.36885 * 322.92084 * 10 9 7 29 29 H 1.08995 * 110.69021 * 241.76513 * 16 14 13 30 30 H 1.08998 * 110.51199 * 118.81345 * 16 14 13 31 31 H 0.97001 * 126.69459 * 179.97438 * 17 16 14 32 32 H 1.08996 * 110.72152 * 153.86507 * 20 11 10 33 33 H 1.08999 * 110.72208 * 277.13956 * 20 11 10 34 34 H 0.96696 * 117.00355 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 -0.0012 11 6 -0.4017 -3.9326 0.6101 12 1 -0.3529 -3.8993 1.6985 13 7 -1.6883 -4.4707 0.1611 14 6 -2.6435 -4.9383 0.9887 15 8 -2.6025 -4.9901 2.1993 16 6 -3.7826 -5.3803 0.0916 17 7 -3.2873 -5.0900 -1.2652 18 6 -2.0596 -4.5592 -1.1212 19 8 -1.3653 -4.2001 -2.0519 20 6 0.7786 -4.7525 0.0252 21 6 1.9320 -3.7274 -0.0005 22 1 2.5593 -3.8529 0.8820 23 6 2.7575 -3.9163 -1.2470 24 8 2.5925 -3.1882 -2.1970 25 8 3.6761 -4.8935 -1.3020 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5268 -2.4864 -1.0198 28 1 -0.5995 -1.7591 0.6145 29 1 -4.6840 -4.8049 0.3020 30 1 -3.9708 -6.4472 0.2109 31 1 -3.7568 -5.2465 -2.0994 32 1 1.0240 -5.5925 0.6748 33 1 0.5465 -5.0977 -0.9823 34 1 4.1814 -4.9754 -2.1224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -118.935491 kcal Electronic energy + Delta-G solvation = -23414.038681 eV Core-core repulsion = 19734.121941 eV Total energy + Delta-G solvation = -3679.916740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.32794 -41.22412 -39.58483 -38.91946 -37.10211 -36.85268 -35.55298 -34.11529 -31.03317 -30.12236 -28.47863 -26.81915 -24.63532 -24.14682 -22.99730 -21.37657 -20.90067 -19.19219 -19.07268 -18.83004 -17.90024 -17.62228 -17.40296 -16.83516 -16.40478 -16.28234 -16.16096 -15.75472 -15.26564 -15.04783 -14.58970 -14.31095 -14.25554 -13.99424 -13.85133 -13.21633 -13.05684 -12.75254 -12.69943 -12.40923 -12.25687 -12.01801 -11.91317 -11.70262 -11.40268 -11.10198 -10.80087 -10.67468 -10.30832 -9.08316 -7.87034 -5.32956 0.69890 1.16774 1.41856 1.43758 1.45477 1.54651 2.00424 2.21651 2.36579 2.46443 3.11625 3.31658 3.43270 3.61455 3.76873 3.91174 4.15714 4.25207 4.39811 4.40174 4.56903 4.60601 4.75780 4.80601 5.07145 5.36217 5.46542 5.64940 5.73560 5.94056 6.14113 6.19645 6.46159 6.96163 7.18284 7.21442 7.60908 8.19507 9.15293 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.006970 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.441548 B = 4016.100716 C = 4927.357945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.154 3.846 11 C 0.129 3.871 12 H 0.124 0.876 13 N -0.569 5.569 14 C 0.514 3.486 15 O -0.503 6.503 16 C 0.080 3.920 17 N -0.710 5.710 18 C 0.688 3.312 19 O -0.579 6.579 20 C -0.110 4.110 21 C 0.163 3.837 22 H 0.104 0.896 23 C 0.452 3.548 24 O -0.544 6.544 25 O -0.514 6.514 26 H 0.250 0.750 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.453 0.547 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -15.641 1.801 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.253 4.253 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.306 5.306 10 C 0.029 3.971 11 C 0.025 3.975 12 H 0.142 0.858 13 N -0.314 5.314 14 C 0.304 3.696 15 O -0.375 6.375 16 C -0.046 4.046 17 N -0.377 5.377 18 C 0.388 3.612 19 O -0.454 6.454 20 C -0.148 4.148 21 C 0.052 3.948 22 H 0.121 0.879 23 C 0.292 3.708 24 O -0.432 6.432 25 O -0.326 6.326 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.300 0.700 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.128 -14.981 2.126 16.726 hybrid contribution 0.778 1.238 -1.527 2.114 sum -6.350 -13.744 0.599 15.152 Atomic orbital electron populations 1.70002 1.06183 1.25271 1.57673 1.25652 0.96710 1.01139 1.01801 0.84949 0.78033 0.79040 0.76875 1.19256 1.22426 1.20621 1.19305 0.90690 0.83106 1.42989 0.90391 1.44602 1.02092 0.99797 1.84155 1.22032 0.84034 0.92885 0.98161 1.22607 0.79881 0.94718 1.00259 0.85794 1.46319 1.18694 1.57869 1.08514 1.21757 0.84751 0.75292 0.87805 1.90793 1.80163 1.53957 1.12595 1.22738 0.95996 1.07499 0.78327 1.45370 1.15538 1.66122 1.10632 1.16201 0.83739 0.78809 0.82428 1.91068 1.57847 1.54071 1.42454 1.22775 0.92168 0.97200 1.02680 1.21097 0.94107 0.87262 0.92316 0.87897 1.25773 0.77859 0.76103 0.91034 1.90672 1.67137 1.45776 1.39637 1.84568 1.49516 1.52168 1.46375 0.94059 0.97709 0.89749 0.82609 0.81523 0.70011 0.85623 0.91427 0.72695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 10.09 21.65 0.22 -57.39 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.23 -13.48 9.55 84.03 0.80 -12.68 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.58 -30.91 2.81 -672.39 -1.89 -32.80 16 10 C 0.15 7.94 5.36 86.85 0.47 8.40 16 11 C 0.13 4.93 3.62 46.38 0.17 5.09 16 12 H 0.12 4.49 7.73 -2.39 -0.02 4.47 16 13 N -0.57 -18.15 2.65 -743.28 -1.97 -20.12 16 14 C 0.51 12.74 8.32 87.94 0.73 13.47 16 15 O -0.50 -15.10 17.57 -2.89 -0.05 -15.15 16 16 C 0.08 0.95 7.97 85.76 0.68 1.64 16 17 N -0.71 -12.87 6.58 -480.31 -3.16 -16.03 16 18 C 0.69 22.22 7.88 179.44 1.41 23.63 16 19 O -0.58 -25.45 14.62 -3.84 -0.06 -25.50 16 20 C -0.11 -3.85 5.98 31.78 0.19 -3.66 16 21 C 0.16 6.85 3.64 44.60 0.16 7.01 16 22 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 23 C 0.45 19.47 7.24 71.23 0.52 19.99 16 24 O -0.54 -29.09 16.90 21.97 0.37 -28.72 16 25 O -0.51 -16.23 13.42 -51.42 -0.69 -16.92 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.00 0.29 5.98 -2.38 -0.01 0.28 16 28 H 0.08 4.85 5.87 -2.39 -0.01 4.84 16 29 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.17 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.45 5.61 8.96 -92.71 -0.83 4.78 16 32 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.07 2.61 6.35 -2.39 -0.02 2.60 16 34 H 0.41 9.42 9.10 -74.06 -0.67 8.75 16 Total: -1.00 -88.51 293.29 0.08 -88.44 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.32 Total: 14.77 kcal Atomic # 6 Polarization: 54.24 SS G_CDS: 5.60 Total: 59.84 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -6.81 Total: -126.34 kcal Atomic # 8 Polarization: -85.86 SS G_CDS: -0.43 Total: -86.29 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -88.51 0.08 -88.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -88.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds