Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00466 * 2 1 4 4 H 1.48501 * 109.46743 * 270.00002 * 3 2 1 5 5 H 1.48503 * 109.47087 * 29.99615 * 3 2 1 6 6 H 1.48496 * 109.47343 * 149.99764 * 3 2 1 7 7 C 1.37883 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97799 * 125.01452 * 10 9 7 12 12 C 1.35237 * 107.86122 * 179.69353 * 11 10 9 13 13 C 1.40410 * 107.86931 * 0.42893 * 12 11 10 14 14 N 1.40155 * 125.97564 * 179.82892 * 13 12 11 15 15 C 1.34774 * 119.99823 * 359.71733 * 14 13 12 16 16 O 1.21295 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 13 18 18 O 1.42895 * 109.47147 * 180.02562 * 17 15 14 19 19 C 1.42901 * 113.99948 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.47372 * 179.97438 * 19 18 17 21 21 O 1.20826 * 119.99932 * 0.02562 * 20 19 18 22 22 O 1.34223 * 120.00354 * 179.97438 * 20 19 18 23 23 N 1.31220 * 108.04774 * 359.56450 * 13 12 11 24 24 H 0.97008 * 119.99450 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46978 * 59.99618 * 9 7 2 26 26 H 1.08997 * 109.46807 * 300.00141 * 9 7 2 27 27 H 1.07998 * 126.06883 * 359.97438 * 11 10 9 28 28 H 1.08004 * 126.06720 * 180.25991 * 12 11 10 29 29 H 0.96994 * 120.00421 * 179.71726 * 14 13 12 30 30 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 31 31 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 32 32 H 1.08995 * 109.47354 * 300.00131 * 19 18 17 33 33 H 1.09003 * 109.47182 * 59.99587 * 19 18 17 34 34 H 0.96698 * 117.00569 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.8553 -3.1139 -0.8933 12 6 5.0613 -4.4043 -0.5451 13 6 4.2950 -4.6690 0.6012 14 7 4.2242 -5.8933 1.2797 15 6 4.9301 -6.9518 0.8352 16 8 5.6264 -6.8451 -0.1523 17 6 4.8536 -8.2685 1.5644 18 8 5.6842 -9.2267 0.9058 19 6 5.6839 -10.5165 1.5209 20 6 6.5875 -11.4421 0.7477 21 8 7.1722 -11.0385 -0.2296 22 8 6.7436 -12.7146 1.1452 23 7 3.6611 -3.5679 0.9296 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6806 -0.8888 27 1 5.3001 -2.6035 -1.7347 28 1 5.6998 -5.1075 -1.0594 29 1 3.6672 -5.9788 2.0691 30 1 5.1960 -8.1359 2.5907 31 1 3.8227 -8.6223 1.5683 32 1 6.0433 -10.4302 2.5463 33 1 4.6703 -10.9175 1.5238 34 1 7.3331 -13.2704 0.6172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605586090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -70.836370 kcal Electronic energy + Delta-G solvation = -20827.745424 eV Core-core repulsion = 17149.914419 eV Total energy + Delta-G solvation = -3677.831005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82984 -40.59793 -39.49891 -37.85059 -36.40900 -34.83246 -33.32493 -31.46212 -30.11194 -29.42998 -27.91543 -26.69940 -22.83166 -22.22777 -21.75402 -20.30365 -19.69587 -18.57083 -17.62296 -17.21148 -17.19174 -16.90370 -16.67722 -16.03791 -15.93109 -15.34656 -14.82029 -14.50851 -14.27341 -13.68677 -13.54656 -13.07576 -12.80370 -12.56268 -12.45943 -12.35572 -12.12000 -11.92153 -11.17489 -10.87015 -10.78476 -10.67766 -10.36534 -10.09037 -10.02342 -9.65592 -9.54140 -8.77932 -8.23109 -7.56763 -6.24914 -4.27275 1.78747 1.87314 2.20861 2.65222 2.81825 3.14755 3.21706 3.22953 3.51368 3.61748 3.92866 4.21812 4.39712 4.54547 4.58016 4.68928 4.77130 4.80908 5.02871 5.41898 5.66095 6.05294 6.12450 6.25587 6.38597 6.41906 6.57147 6.64598 7.22521 7.28874 7.48359 7.52541 7.78761 8.15279 8.31698 8.52098 8.84570 9.29991 10.87729 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.056896 B = 0.002544 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.010160 B =11002.373056 C =11283.644326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.283 4.283 13 C 0.261 3.739 14 N -0.628 5.628 15 C 0.518 3.482 16 O -0.490 6.490 17 C 0.051 3.949 18 O -0.342 6.342 19 C 0.071 3.929 20 C 0.477 3.523 21 O -0.485 6.485 22 O -0.517 6.517 23 N -0.295 5.295 24 H 0.268 0.732 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.413 0.587 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.986 -20.490 6.053 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.007 3.993 14 N -0.278 5.278 15 C 0.302 3.698 16 O -0.361 6.361 17 C -0.028 4.028 18 O -0.260 6.260 19 C -0.007 4.007 20 C 0.317 3.683 21 O -0.370 6.370 22 O -0.331 6.331 23 N -0.126 5.126 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.187 0.813 28 H 0.179 0.821 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 10.510 -19.232 5.926 22.703 hybrid contribution 0.688 0.137 -0.285 0.758 sum 11.199 -19.095 5.641 22.844 Atomic orbital electron populations 1.69877 1.06156 1.27309 1.49121 1.24839 0.94884 0.98821 0.94252 0.86900 0.80421 0.83799 0.78944 1.19693 1.20529 1.18864 1.21104 0.87763 0.95707 1.52710 0.89642 1.20060 0.97477 0.72941 0.98249 1.48621 1.32479 1.10266 1.18645 1.22569 0.95782 0.94682 0.96668 1.21572 1.11240 0.96935 1.01703 1.19033 0.99056 0.86443 0.94742 1.42219 1.47500 1.07398 1.30704 1.20008 0.80175 0.84301 0.85339 1.90718 1.37827 1.82909 1.24663 1.22175 0.96483 0.87795 0.96392 1.88075 1.67388 1.18199 1.52357 1.21635 0.99254 0.83750 0.96070 1.22809 0.80809 0.81277 0.83419 1.90822 1.44440 1.75894 1.25863 1.84431 1.66260 1.23222 1.59150 1.77384 1.23706 0.95545 1.15983 0.92170 0.93980 0.93279 0.81282 0.82050 0.75203 0.89122 0.89034 0.88371 0.88339 0.72327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.53 -14.98 9.79 -34.44 -0.34 -15.32 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.45 5.33 -5.20 -0.03 5.42 16 10 N -0.32 -7.16 3.67 -62.57 -0.23 -7.39 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.54 9.61 -39.83 -0.38 -5.93 16 13 C 0.26 5.09 8.11 -154.39 -1.25 3.84 16 14 N -0.63 -9.03 5.45 -11.13 -0.06 -9.09 16 15 C 0.52 7.14 7.87 -10.98 -0.09 7.05 16 16 O -0.49 -9.01 13.63 -14.37 -0.20 -9.21 16 17 C 0.05 0.42 6.42 36.01 0.23 0.65 16 18 O -0.34 -3.76 9.41 -64.76 -0.61 -4.37 16 19 C 0.07 0.44 6.53 36.01 0.24 0.68 16 20 C 0.48 4.10 8.40 36.01 0.30 4.40 16 21 O -0.49 -6.64 17.26 -25.48 -0.44 -7.08 16 22 O -0.52 -2.70 13.42 -39.24 -0.53 -3.22 16 23 N -0.30 -6.64 12.42 31.44 0.39 -6.25 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 26 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 27 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 28 H 0.16 3.13 5.92 -52.48 -0.31 2.82 16 29 H 0.41 4.44 8.82 -40.82 -0.36 4.08 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.42 0.60 9.10 45.56 0.41 1.01 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -39.86 311.93 -5.20 -45.06 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.72 Total: 3.53 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.61 Total: 3.63 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.87 Total: -48.38 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.77 Total: -23.88 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -39.86 -5.20 -45.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.774 kcal (2) G-P(sol) polarization free energy of solvation -39.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds