Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00466 * 2 1 4 4 H 1.48501 * 109.46743 * 270.00002 * 3 2 1 5 5 H 1.48503 * 109.47087 * 29.99615 * 3 2 1 6 6 H 1.48496 * 109.47343 * 149.99764 * 3 2 1 7 7 C 1.37883 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97799 * 125.01452 * 10 9 7 12 12 C 1.35237 * 107.86122 * 179.69353 * 11 10 9 13 13 C 1.40410 * 107.86931 * 0.42893 * 12 11 10 14 14 N 1.40155 * 125.97564 * 179.82892 * 13 12 11 15 15 C 1.34774 * 119.99823 * 359.71733 * 14 13 12 16 16 O 1.21295 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 13 18 18 O 1.42895 * 109.47147 * 180.02562 * 17 15 14 19 19 C 1.42901 * 113.99948 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.47372 * 179.97438 * 19 18 17 21 21 O 1.20826 * 119.99932 * 0.02562 * 20 19 18 22 22 O 1.34223 * 120.00354 * 179.97438 * 20 19 18 23 23 N 1.31220 * 108.04774 * 359.56450 * 13 12 11 24 24 H 0.97008 * 119.99450 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46978 * 59.99618 * 9 7 2 26 26 H 1.08997 * 109.46807 * 300.00141 * 9 7 2 27 27 H 1.07998 * 126.06883 * 359.97438 * 11 10 9 28 28 H 1.08004 * 126.06720 * 180.25991 * 12 11 10 29 29 H 0.96994 * 120.00421 * 179.71726 * 14 13 12 30 30 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 31 31 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 32 32 H 1.08995 * 109.47354 * 300.00131 * 19 18 17 33 33 H 1.09003 * 109.47182 * 59.99587 * 19 18 17 34 34 H 0.96698 * 117.00569 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.8553 -3.1139 -0.8933 12 6 5.0613 -4.4043 -0.5451 13 6 4.2950 -4.6690 0.6012 14 7 4.2242 -5.8933 1.2797 15 6 4.9301 -6.9518 0.8352 16 8 5.6264 -6.8451 -0.1523 17 6 4.8536 -8.2685 1.5644 18 8 5.6842 -9.2267 0.9058 19 6 5.6839 -10.5165 1.5209 20 6 6.5875 -11.4421 0.7477 21 8 7.1722 -11.0385 -0.2296 22 8 6.7436 -12.7146 1.1452 23 7 3.6611 -3.5679 0.9296 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6806 -0.8888 27 1 5.3001 -2.6035 -1.7347 28 1 5.6998 -5.1075 -1.0594 29 1 3.6672 -5.9788 2.0691 30 1 5.1960 -8.1359 2.5907 31 1 3.8227 -8.6223 1.5683 32 1 6.0433 -10.4302 2.5463 33 1 4.6703 -10.9175 1.5238 34 1 7.3331 -13.2704 0.6172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605586090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -103.313780 kcal Electronic energy + Delta-G solvation = -20829.153750 eV Core-core repulsion = 17149.914419 eV Total energy + Delta-G solvation = -3679.239331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24936 -41.27547 -40.64338 -38.58146 -37.03990 -36.23347 -35.20826 -33.20820 -31.09569 -30.73923 -29.19418 -27.93220 -24.58616 -23.05849 -22.75597 -21.83534 -21.03338 -19.21700 -19.10716 -18.51657 -18.20457 -17.77819 -17.57117 -17.17317 -16.77813 -16.67753 -16.24252 -15.74742 -15.41767 -15.13361 -14.82153 -14.41141 -14.20357 -13.90182 -13.84795 -13.27834 -13.13570 -12.95981 -12.56907 -12.52381 -12.31477 -11.83115 -11.63247 -11.55971 -11.46668 -10.88661 -10.87097 -10.85733 -9.78881 -9.12937 -8.37254 -6.47408 0.90517 1.08186 1.18299 1.37164 1.39932 1.42314 1.49719 1.72478 2.19375 2.29289 2.31804 2.95264 3.16681 3.56245 3.93828 4.13309 4.20359 4.22859 4.25449 4.35539 4.36028 4.60588 4.75727 4.85943 4.89029 5.13363 5.24651 5.58989 5.82465 5.86854 5.99613 6.25831 6.39895 6.58261 6.96198 6.98980 7.11602 7.15503 8.79700 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.056896 B = 0.002544 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.010160 B =11002.373056 C =11283.644326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.061 3.939 12 C -0.298 4.298 13 C 0.266 3.734 14 N -0.620 5.620 15 C 0.513 3.487 16 O -0.542 6.542 17 C 0.061 3.939 18 O -0.390 6.390 19 C 0.067 3.933 20 C 0.479 3.521 21 O -0.550 6.550 22 O -0.504 6.504 23 N -0.342 5.342 24 H 0.272 0.728 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.209 0.791 28 H 0.163 0.837 29 H 0.429 0.571 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -20.807 7.236 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.087 4.087 12 C -0.329 4.329 13 C 0.011 3.989 14 N -0.272 5.272 15 C 0.300 3.700 16 O -0.416 6.416 17 C -0.017 4.017 18 O -0.310 6.310 19 C -0.010 4.010 20 C 0.323 3.677 21 O -0.440 6.440 22 O -0.319 6.319 23 N -0.173 5.173 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.226 0.774 28 H 0.180 0.820 29 H 0.268 0.732 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 11.802 -19.629 7.159 23.996 hybrid contribution 0.261 -0.028 -0.628 0.680 sum 12.062 -19.657 6.531 23.970 Atomic orbital electron populations 1.70051 1.08528 1.28794 1.50639 1.25920 0.95786 1.03522 0.93250 0.85617 0.79519 0.77245 0.80005 1.17893 1.20584 1.16227 1.21221 0.90433 0.93763 1.53035 0.95431 1.19901 0.94227 0.74285 0.99671 1.48520 1.33992 1.10167 1.19914 1.23224 0.94261 0.94680 0.96559 1.21749 1.11745 0.97293 1.02154 1.19454 0.97388 0.87416 0.94622 1.42400 1.47884 1.05945 1.30937 1.21266 0.78320 0.85659 0.84761 1.90688 1.39931 1.83847 1.27178 1.22320 0.98626 0.84122 0.96680 1.87998 1.68372 1.20254 1.54338 1.22017 1.00695 0.81517 0.96730 1.23457 0.79856 0.82006 0.82426 1.90804 1.47280 1.77144 1.28804 1.84410 1.66304 1.22195 1.58962 1.77301 1.25784 0.96689 1.17544 0.91875 0.93500 0.90174 0.77397 0.82004 0.73192 0.84684 0.85062 0.84611 0.84826 0.70537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 2 C 0.01 0.79 5.47 84.66 0.46 1.26 16 3 Si 0.96 40.52 27.47 68.60 1.88 42.40 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 7 C -0.55 -31.40 9.79 25.60 0.25 -31.15 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.24 11.03 5.33 85.63 0.46 11.49 16 10 N -0.34 -15.45 3.67 -351.86 -1.29 -16.74 16 11 C 0.06 2.29 11.43 83.52 0.96 3.25 16 12 C -0.30 -11.68 9.61 22.11 0.21 -11.47 16 13 C 0.27 10.44 8.11 133.33 1.08 11.53 16 14 N -0.62 -17.29 5.45 -307.50 -1.68 -18.96 16 15 C 0.51 13.53 7.87 87.66 0.69 14.22 16 16 O -0.54 -20.09 13.63 15.96 0.22 -19.87 16 17 C 0.06 0.79 6.42 71.24 0.46 1.25 16 18 O -0.39 -7.75 9.41 -120.75 -1.14 -8.89 16 19 C 0.07 0.62 6.53 71.24 0.47 1.08 16 20 C 0.48 7.58 8.40 71.24 0.60 8.18 16 21 O -0.55 -15.35 17.26 28.39 0.49 -14.86 16 22 O -0.50 -4.21 13.42 -51.35 -0.69 -4.90 16 23 N -0.34 -15.68 12.42 -54.45 -0.68 -16.35 16 24 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 25 H 0.05 2.11 7.20 -2.39 -0.02 2.09 16 26 H 0.08 3.19 7.50 -2.39 -0.02 3.18 16 27 H 0.21 5.86 8.06 -2.91 -0.02 5.83 16 28 H 0.16 6.36 5.92 -2.91 -0.02 6.34 16 29 H 0.43 8.63 8.82 -92.71 -0.82 7.81 16 30 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.43 0.61 9.10 -74.06 -0.67 -0.07 16 Total: -1.00 -94.26 311.93 2.68 -91.58 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.38 Total: 14.34 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.63 Total: 9.65 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.34 Total: -109.45 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.12 Total: -48.52 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.88 Total: 42.40 kcal Total: -94.26 2.68 -91.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.733 kcal (2) G-P(sol) polarization free energy of solvation -94.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds