Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00387 * 2 1 4 4 H 1.48506 * 109.47225 * 270.00475 * 3 2 1 5 5 H 1.48498 * 109.47014 * 29.99791 * 3 2 1 6 6 H 1.48499 * 109.47288 * 150.00601 * 3 2 1 7 7 C 1.37882 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99930 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99939 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00073 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99592 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00006 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47523 * 180.02562 * 14 13 11 16 16 N 1.46495 * 109.47240 * 179.97438 * 15 14 13 17 17 C 1.34957 * 126.03329 * 125.02128 * 16 15 14 18 18 C 1.35317 * 107.74055 * 179.97438 * 17 16 15 19 19 N 1.48025 * 126.03382 * 180.02562 * 18 17 16 20 20 O 1.21799 * 119.99747 * 179.97438 * 19 18 17 21 21 O 1.21799 * 120.00246 * 359.97347 * 19 18 17 22 22 C 1.39868 * 107.92640 * 0.02562 * 18 17 16 23 23 N 1.30844 * 108.19764 * 359.97438 * 22 18 17 24 24 H 0.96996 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47147 * 59.99924 * 9 7 2 26 26 H 1.09001 * 109.47355 * 300.00105 * 9 7 2 27 27 H 0.96998 * 119.99550 * 359.97438 * 10 9 7 28 28 H 0.97002 * 120.00676 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.47269 * 59.99420 * 14 13 11 30 30 H 1.09005 * 109.46871 * 300.00136 * 14 13 11 31 31 H 1.09000 * 109.47373 * 59.99421 * 15 14 13 32 32 H 1.09005 * 109.47107 * 299.99929 * 15 14 13 33 33 H 1.07994 * 126.12765 * 359.97438 * 17 16 15 34 34 H 1.07995 * 125.89921 * 180.26377 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8976 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2144 -4.3602 -0.0007 15 6 7.4522 -5.8716 -0.0020 16 7 8.8924 -6.1394 -0.0020 17 6 9.5583 -6.9010 0.8912 18 6 10.8660 -6.8963 0.5433 19 7 11.9575 -7.6044 1.2494 20 8 13.1011 -7.5245 0.8382 21 8 11.7119 -8.2668 2.2415 22 6 11.0041 -6.1044 -0.6012 23 7 9.8216 -5.6503 -0.9291 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0002 28 1 5.1437 -4.8297 -0.0013 29 1 7.6651 -3.9219 0.8897 30 1 7.6660 -3.9210 -0.8903 31 1 7.0015 -6.3096 -0.8926 32 1 7.0005 -6.3113 0.8873 33 1 9.1252 -7.4210 1.7328 34 1 11.9267 -5.9061 -1.1266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426438307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = 49.737836 kcal Electronic energy + Delta-G solvation = -20613.645096 eV Core-core repulsion = 16973.335332 eV Total energy + Delta-G solvation = -3640.309764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.81699 -41.71832 -39.58557 -36.75806 -36.16145 -34.37895 -33.59137 -32.39801 -31.78188 -29.72017 -27.74874 -26.19075 -24.27749 -22.20115 -22.07378 -21.72061 -20.58517 -19.50454 -18.75565 -18.40050 -17.83945 -17.18684 -16.70328 -16.40775 -15.76506 -15.41855 -15.21840 -14.40173 -14.38144 -14.06883 -13.97039 -13.29090 -12.79660 -12.75501 -12.41832 -12.24183 -11.91383 -11.78376 -11.38819 -11.34879 -11.06916 -10.82917 -10.58897 -10.06294 -10.03931 -9.81897 -9.55122 -9.19598 -8.83798 -8.19277 -6.27833 -4.30520 -0.10732 0.77960 0.92023 1.65536 1.82537 2.93258 3.22640 3.30042 3.37787 3.52043 3.58381 3.73635 3.96343 4.09131 4.27889 4.39081 4.45941 4.49916 4.76378 5.07704 5.20685 5.32776 5.47262 5.70928 6.08805 6.36647 6.47394 6.58823 7.01161 7.07530 7.23805 7.38728 7.40796 8.17285 8.52772 8.70629 9.00051 9.32321 10.83964 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.050692 B = 0.002338 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.222470 B =11974.070123 C =12169.235856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.719 5.719 11 C 0.697 3.303 12 O -0.598 6.598 13 N -0.755 5.755 14 C 0.131 3.869 15 C 0.117 3.883 16 N -0.342 5.342 17 C 0.158 3.842 18 C -0.196 4.196 19 N 0.070 4.930 20 O -0.163 6.163 21 O -0.175 6.175 22 C 0.114 3.886 23 N -0.259 5.259 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.393 0.607 28 H 0.395 0.605 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.207 0.793 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.036 -17.027 0.551 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.371 5.371 11 C 0.397 3.603 12 O -0.477 6.477 13 N -0.415 5.415 14 C 0.005 3.995 15 C -0.004 4.004 16 N -0.120 5.120 17 C 0.004 3.996 18 C -0.293 4.293 19 N 0.586 4.414 20 O -0.378 6.378 21 O -0.387 6.387 22 C -0.075 4.075 23 N -0.078 5.078 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.227 0.773 28 H 0.229 0.771 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.224 0.776 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 16.193 -14.898 -0.615 22.012 hybrid contribution 0.408 -0.515 0.736 0.986 sum 16.600 -15.413 0.121 22.653 Atomic orbital electron populations 1.69874 1.06210 1.27516 1.49256 1.24785 0.94805 0.99203 0.93818 0.86810 0.80569 0.83163 0.79114 1.19804 1.20858 1.18468 1.21062 0.88436 0.95222 1.53552 0.90266 1.19401 0.94947 0.77339 0.96780 1.45403 1.03445 1.11291 1.76950 1.16017 0.83741 0.82235 0.78338 1.90899 1.55365 1.42967 1.58431 1.44845 1.06256 1.07269 1.83091 1.21154 0.82414 0.91629 1.04330 1.22244 0.73090 0.98801 1.06244 1.48697 1.08648 1.35072 1.19577 1.22420 0.90676 0.92145 0.94378 1.21068 0.88476 1.15220 1.04584 1.42452 1.01083 0.98353 0.99465 1.94561 1.05142 1.67891 1.70179 1.94556 1.89623 1.39139 1.15339 1.24057 0.98044 0.92542 0.92879 1.77876 0.96916 1.20505 1.12487 0.92188 0.95811 0.96237 0.77329 0.77097 0.91004 0.89914 0.87310 0.86555 0.77604 0.77195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.54 -14.48 9.83 -34.44 -0.34 -14.82 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.76 16 9 C 0.24 5.67 4.50 -5.19 -0.02 5.65 16 10 N -0.72 -13.64 5.55 -66.41 -0.37 -14.01 16 11 C 0.70 12.45 8.57 -86.92 -0.74 11.71 16 12 O -0.60 -13.43 16.34 5.29 0.09 -13.35 16 13 N -0.76 -8.49 5.56 -65.22 -0.36 -8.85 16 14 C 0.13 1.24 5.86 -4.04 -0.02 1.22 16 15 C 0.12 0.56 6.62 -4.05 -0.03 0.53 16 16 N -0.34 -2.28 3.68 -61.37 -0.23 -2.51 16 17 C 0.16 0.94 11.13 -17.22 -0.19 0.75 16 18 C -0.20 -1.62 7.11 -80.37 -0.57 -2.19 16 19 N 0.07 0.74 4.45 33.75 0.15 0.89 16 20 O -0.16 -1.88 19.05 -29.46 -0.56 -2.44 16 21 O -0.18 -1.96 19.02 -29.46 -0.56 -2.52 16 22 C 0.11 0.89 11.75 -17.36 -0.20 0.69 16 23 N -0.26 -2.30 12.42 30.62 0.38 -1.92 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.39 6.33 8.34 -40.82 -0.34 5.99 16 28 H 0.40 2.94 8.49 -40.82 -0.35 2.60 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.12 0.18 8.07 -51.93 -0.42 -0.23 16 33 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -35.87 315.44 -6.39 -42.26 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.56 Total: 0.87 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.22 Total: 5.58 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.35 Total: -51.52 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.04 Total: -18.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.87 -6.39 -42.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.996 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds