Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00387 * 2 1 4 4 H 1.48506 * 109.47225 * 270.00475 * 3 2 1 5 5 H 1.48498 * 109.47014 * 29.99791 * 3 2 1 6 6 H 1.48499 * 109.47288 * 150.00601 * 3 2 1 7 7 C 1.37882 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99930 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99939 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00073 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99592 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00006 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47523 * 180.02562 * 14 13 11 16 16 N 1.46495 * 109.47240 * 179.97438 * 15 14 13 17 17 C 1.34957 * 126.03329 * 125.02128 * 16 15 14 18 18 C 1.35317 * 107.74055 * 179.97438 * 17 16 15 19 19 N 1.48025 * 126.03382 * 180.02562 * 18 17 16 20 20 O 1.21799 * 119.99747 * 179.97438 * 19 18 17 21 21 O 1.21799 * 120.00246 * 359.97347 * 19 18 17 22 22 C 1.39868 * 107.92640 * 0.02562 * 18 17 16 23 23 N 1.30844 * 108.19764 * 359.97438 * 22 18 17 24 24 H 0.96996 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47147 * 59.99924 * 9 7 2 26 26 H 1.09001 * 109.47355 * 300.00105 * 9 7 2 27 27 H 0.96998 * 119.99550 * 359.97438 * 10 9 7 28 28 H 0.97002 * 120.00676 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.47269 * 59.99420 * 14 13 11 30 30 H 1.09005 * 109.46871 * 300.00136 * 14 13 11 31 31 H 1.09000 * 109.47373 * 59.99421 * 15 14 13 32 32 H 1.09005 * 109.47107 * 299.99929 * 15 14 13 33 33 H 1.07994 * 126.12765 * 359.97438 * 17 16 15 34 34 H 1.07995 * 125.89921 * 180.26377 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8976 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2144 -4.3602 -0.0007 15 6 7.4522 -5.8716 -0.0020 16 7 8.8924 -6.1394 -0.0020 17 6 9.5583 -6.9010 0.8912 18 6 10.8660 -6.8963 0.5433 19 7 11.9575 -7.6044 1.2494 20 8 13.1011 -7.5245 0.8382 21 8 11.7119 -8.2668 2.2415 22 6 11.0041 -6.1044 -0.6012 23 7 9.8216 -5.6503 -0.9291 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0002 28 1 5.1437 -4.8297 -0.0013 29 1 7.6651 -3.9219 0.8897 30 1 7.6660 -3.9210 -0.8903 31 1 7.0015 -6.3096 -0.8926 32 1 7.0005 -6.3113 0.8873 33 1 9.1252 -7.4210 1.7328 34 1 11.9267 -5.9061 -1.1266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426438307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 21.496731 kcal Electronic energy + Delta-G solvation = -20614.869723 eV Core-core repulsion = 16973.335332 eV Total energy + Delta-G solvation = -3641.534390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.44584 -42.38890 -40.97683 -37.54057 -37.10353 -36.08551 -34.63198 -34.18717 -32.37715 -30.77925 -29.29118 -26.96402 -25.14239 -23.87326 -22.68995 -22.37204 -21.99467 -20.33310 -19.78048 -19.46134 -18.57334 -18.36154 -17.87765 -17.41957 -16.93798 -16.51374 -16.24109 -15.73889 -15.41098 -15.22517 -14.99379 -14.49763 -14.39184 -14.18663 -13.45732 -13.14702 -13.03856 -12.74121 -12.67516 -12.51144 -12.22219 -12.05359 -11.94045 -11.65747 -11.42853 -11.13054 -10.92179 -10.63229 -10.43062 -9.73914 -8.40116 -6.46629 -0.82269 0.17583 0.35277 1.07163 1.20647 1.33044 1.35962 1.47981 1.84501 2.14314 2.28171 2.94382 2.95850 3.32466 3.43667 3.47929 3.61986 3.91931 3.99342 4.14472 4.54293 4.63616 4.75294 4.79586 5.04411 5.16763 5.24943 5.33993 5.39755 5.51388 5.91329 5.94496 6.24737 6.55902 6.58697 7.13042 7.23646 7.60790 8.74314 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.050692 B = 0.002338 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.222470 B =11974.070123 C =12169.235856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.718 5.718 11 C 0.696 3.304 12 O -0.646 6.646 13 N -0.726 5.726 14 C 0.131 3.869 15 C 0.124 3.876 16 N -0.341 5.341 17 C 0.184 3.816 18 C -0.217 4.217 19 N 0.074 4.926 20 O -0.199 6.199 21 O -0.183 6.183 22 C 0.116 3.884 23 N -0.292 5.292 24 H 0.272 0.728 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.408 0.592 28 H 0.419 0.581 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.247 0.753 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.032 -18.277 0.943 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.126 3.874 10 N -0.371 5.371 11 C 0.396 3.604 12 O -0.528 6.528 13 N -0.385 5.385 14 C 0.006 3.994 15 C 0.005 3.995 16 N -0.119 5.119 17 C 0.028 3.972 18 C -0.316 4.316 19 N 0.585 4.415 20 O -0.406 6.406 21 O -0.395 6.395 22 C -0.074 4.074 23 N -0.111 5.111 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.244 0.756 28 H 0.257 0.743 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.180 0.820 33 H 0.263 0.737 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 16.230 -16.232 -0.245 22.956 hybrid contribution 0.347 -0.203 0.612 0.732 sum 16.577 -16.435 0.367 23.346 Atomic orbital electron populations 1.69971 1.07609 1.28582 1.50721 1.25560 0.95516 1.02566 0.93714 0.85892 0.79272 0.79541 0.79387 1.19135 1.19929 1.18504 1.21267 0.89821 0.94626 1.52470 0.91903 1.18955 0.93081 0.79873 0.95519 1.45054 1.04519 1.09984 1.77577 1.16148 0.82716 0.83718 0.77856 1.90870 1.56334 1.45221 1.60406 1.44470 1.07712 1.05555 1.80811 1.21171 0.80519 0.95226 1.02508 1.22402 0.72351 0.95164 1.09624 1.48822 1.09042 1.34844 1.19170 1.23024 0.89599 0.90487 0.94067 1.21221 0.88730 1.16301 1.05305 1.42684 1.01394 0.98125 0.99309 1.94558 1.06221 1.69078 1.70757 1.94528 1.89645 1.39488 1.15803 1.24365 0.98439 0.91824 0.92744 1.77862 0.97607 1.21686 1.13921 0.91862 0.97184 0.97387 0.75593 0.74320 0.92351 0.92479 0.85264 0.82002 0.73672 0.75908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.96 21.45 0.30 -53.89 16 2 C 0.03 1.48 5.47 84.66 0.46 1.95 16 3 Si 0.94 43.18 27.47 68.60 1.88 45.06 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 7 C -0.54 -28.87 9.83 25.60 0.25 -28.62 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.25 11.83 4.50 85.63 0.38 12.21 16 10 N -0.72 -26.38 5.55 -482.30 -2.68 -29.06 16 11 C 0.70 23.91 8.57 179.05 1.53 25.44 16 12 O -0.65 -28.82 16.34 -3.97 -0.06 -28.88 16 13 N -0.73 -14.33 5.56 -478.54 -2.66 -16.99 16 14 C 0.13 2.18 5.86 86.38 0.51 2.69 16 15 C 0.12 0.65 6.62 86.38 0.57 1.22 16 16 N -0.34 -3.46 3.68 -348.07 -1.28 -4.74 16 17 C 0.18 1.53 11.13 83.54 0.93 2.46 16 18 C -0.22 -3.22 7.11 36.09 0.26 -2.96 16 19 N 0.07 1.51 4.45 -47.12 -0.21 1.30 16 20 O -0.20 -4.63 19.05 18.89 0.36 -4.27 16 21 O -0.18 -3.86 19.02 18.89 0.36 -3.50 16 22 C 0.12 1.68 11.75 85.23 1.00 2.68 16 23 N -0.29 -4.72 12.42 -57.02 -0.71 -5.43 16 24 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 25 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 26 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 27 H 0.41 12.42 8.34 -92.71 -0.77 11.65 16 28 H 0.42 4.54 8.49 -92.71 -0.79 3.75 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.16 -0.52 8.07 -2.38 -0.02 -0.54 16 33 H 0.25 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -80.13 315.44 0.75 -79.37 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -0.45 Total: 3.97 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.90 Total: 17.07 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -7.24 Total: -108.81 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: 0.65 Total: -36.66 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -80.13 0.75 -79.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.870 kcal (2) G-P(sol) polarization free energy of solvation -80.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds