Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47136 * 163.95724 * 3 2 1 5 5 N 1.46897 * 109.47298 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00122 * 170.00105 * 5 4 3 7 7 C 1.53246 * 109.33920 * 172.74589 * 6 5 4 8 8 N 1.47077 * 108.52284 * 53.82904 * 7 6 5 9 9 C 1.34774 * 120.88194 * 128.83612 * 8 7 6 10 10 O 1.21278 * 120.00251 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99924 * 179.97438 * 9 8 7 12 12 S 1.80995 * 109.47338 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00267 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00098 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46963 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47063 * 119.99722 * 17 15 13 20 20 H 1.48503 * 109.46668 * 239.99548 * 17 15 13 21 21 C 1.47081 * 118.23534 * 308.81269 * 8 7 6 22 22 C 1.46897 * 110.99998 * 45.69378 * 5 4 3 23 23 H 1.09001 * 109.47315 * 43.95715 * 3 2 1 24 24 H 1.08997 * 109.47054 * 283.95703 * 3 2 1 25 25 H 1.09004 * 109.47489 * 59.99606 * 4 3 2 26 26 H 1.08997 * 109.47132 * 299.99932 * 4 3 2 27 27 H 1.08997 * 109.49724 * 52.78734 * 6 5 4 28 28 H 1.09005 * 109.49070 * 292.70056 * 6 5 4 29 29 H 1.09006 * 109.62559 * 173.53557 * 7 6 5 30 30 H 1.08996 * 109.62828 * 293.92300 * 7 6 5 31 31 H 1.08997 * 109.47574 * 300.00211 * 11 9 8 32 32 H 1.09005 * 109.46878 * 60.00094 * 11 9 8 33 33 H 0.97003 * 119.99517 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.62944 * 170.89122 * 21 8 7 35 35 H 1.08999 * 109.63243 * 291.47520 * 21 8 7 36 36 H 1.08999 * 109.49205 * 67.29797 * 22 5 4 37 37 H 1.08997 * 109.51913 * 307.22880 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3872 -0.3986 5 7 4.5863 1.3877 -0.3992 6 6 5.1121 2.6201 -1.0013 7 6 6.6332 2.6646 -0.8202 8 7 7.2040 1.4188 -1.3545 9 6 8.2225 1.4471 -2.2366 10 8 8.6803 2.5096 -2.6005 11 6 8.7926 0.1584 -2.7709 12 16 10.1367 0.5263 -3.9258 13 6 10.6041 -1.1100 -4.3827 14 1 10.0860 -1.9577 -3.9591 15 6 11.6388 -1.3096 -5.2861 16 7 12.2705 -0.2764 -5.8019 17 14 12.1338 -3.0443 -5.7709 18 1 11.2744 -4.0222 -5.0565 19 1 11.9663 -3.2155 -7.2365 20 1 13.5545 -3.2742 -5.4048 21 6 6.6340 0.1413 -0.9001 22 6 5.1129 0.1962 -1.0781 23 1 2.9717 -0.7389 -0.7133 24 1 2.9714 -0.2470 0.9973 25 1 2.7537 2.1269 0.3146 26 1 2.7539 1.6349 -1.3959 27 1 4.6623 3.4844 -0.5127 28 1 4.8718 2.6368 -2.0644 29 1 7.0418 3.5169 -1.3632 30 1 6.8733 2.7560 0.2390 31 1 9.1767 -0.4393 -1.9443 32 1 8.0110 -0.3975 -3.2888 33 1 12.9934 -0.4159 -6.4336 34 1 7.0431 -0.6746 -1.4958 35 1 6.8743 -0.0133 0.1518 36 1 4.8726 0.2466 -2.1401 37 1 4.6637 -0.6978 -0.6455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = 5.521873 kcal Electronic energy + Delta-G solvation = -19384.882894 eV Core-core repulsion = 16288.948996 eV Total energy + Delta-G solvation = -3095.933898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14531 -38.40289 -36.98779 -34.96737 -32.45101 -32.27433 -31.05584 -29.36987 -26.97457 -25.49605 -24.15226 -23.11468 -21.27877 -19.06730 -18.14957 -17.72250 -16.78898 -16.03921 -15.76334 -15.53534 -15.29461 -15.10194 -14.82611 -14.65628 -14.00422 -13.82308 -13.55842 -13.24034 -13.07588 -12.75765 -12.64723 -12.35887 -12.18242 -11.88970 -11.64523 -11.50065 -11.41699 -11.09222 -11.08888 -11.02511 -10.76887 -9.81814 -9.39609 -9.09708 -8.93454 -8.46579 -8.24644 -6.52768 -6.23988 -3.94725 2.28988 2.37176 2.85744 3.01029 3.19865 3.20766 3.27596 3.30607 3.57196 3.80015 4.17821 4.33716 4.46932 4.55111 4.71943 4.86311 4.93155 5.00085 5.05146 5.11419 5.17568 5.29696 5.32771 5.36004 5.43543 5.52644 5.66843 5.75257 5.83296 5.90487 6.07614 6.47732 6.54514 6.62315 7.13736 7.52614 7.57650 8.32950 8.52183 9.21491 10.83465 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.003242 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.144502 B = 8633.270699 C = 9512.598589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.208 3.792 3 C -0.033 4.033 4 C 0.059 3.941 5 N -0.535 5.535 6 C 0.043 3.957 7 C 0.118 3.882 8 N -0.623 5.623 9 C 0.535 3.465 10 O -0.517 6.517 11 C -0.150 4.150 12 S -0.062 6.062 13 C -0.534 4.534 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.113 3.887 22 C 0.027 3.973 23 H 0.113 0.887 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.142 0.559 12.855 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.110 4.110 3 C -0.073 4.073 4 C -0.070 4.070 5 N -0.260 5.260 6 C -0.086 4.086 7 C -0.005 4.005 8 N -0.360 5.360 9 C 0.323 3.677 10 O -0.391 6.391 11 C -0.301 4.301 12 S 0.165 5.835 13 C -0.682 4.682 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.011 4.011 22 C -0.102 4.102 23 H 0.131 0.869 24 H 0.139 0.861 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.847 2.191 12.663 21.189 hybrid contribution -0.103 -2.382 -0.710 2.488 sum -16.950 -0.191 11.953 20.742 Atomic orbital electron populations 1.81265 1.13074 1.08101 1.08852 1.29100 0.95178 0.93532 0.93226 1.19497 0.81459 0.99997 1.06334 1.22022 0.87988 0.95701 1.01257 1.62038 1.06053 1.02828 1.55048 1.22523 0.95863 0.92187 0.97978 1.21583 0.91064 0.88172 0.99662 1.48164 1.35576 1.06849 1.45418 1.20347 0.78541 0.91322 0.77480 1.90694 1.58832 1.32040 1.57532 1.23545 1.04627 0.97439 1.04467 1.85432 1.35841 1.11583 1.50692 1.22889 1.22095 0.92170 1.31086 0.90878 1.25001 0.95259 0.98177 0.95194 1.70030 1.21846 1.29763 1.28610 0.86115 0.78463 0.82541 0.78364 1.19593 1.20589 1.20562 1.21805 0.91779 0.86425 1.01055 1.22741 0.95936 0.93831 0.97660 0.86926 0.86144 0.89448 0.93736 0.89415 0.93890 0.88525 0.90957 0.89188 0.89347 0.92225 0.88806 0.90538 0.93678 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.65 18.54 42.15 0.78 -3.87 16 2 C 0.21 1.47 15.43 -20.76 -0.32 1.15 16 3 C -0.03 -0.12 4.95 -29.52 -0.15 -0.26 16 4 C 0.06 0.29 5.22 -3.83 -0.02 0.27 16 5 N -0.53 -3.58 4.78 -234.32 -1.12 -4.70 16 6 C 0.04 0.35 5.58 -3.70 -0.02 0.33 16 7 C 0.12 1.28 6.60 -3.60 -0.02 1.26 16 8 N -0.62 -8.10 3.01 -172.46 -0.52 -8.62 16 9 C 0.54 9.69 7.73 -10.99 -0.08 9.60 16 10 O -0.52 -11.43 15.31 5.56 0.09 -11.34 16 11 C -0.15 -2.91 4.52 36.01 0.16 -2.75 16 12 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 13 C -0.53 -14.86 9.50 30.94 0.29 -14.56 16 14 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 15 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 16 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 17 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.11 1.04 6.50 -3.60 -0.02 1.02 16 22 C 0.03 0.18 5.04 -3.70 -0.02 0.16 16 23 H 0.11 0.27 6.18 -51.93 -0.32 -0.06 16 24 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 27 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.61 8.00 -51.92 -0.42 1.19 16 32 H 0.09 1.56 7.66 -51.91 -0.40 1.17 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 0.88 6.02 -51.93 -0.31 0.56 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.37 5.73 -51.93 -0.30 0.07 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -35.59 324.68 -7.71 -43.30 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -5.03 Total: -4.87 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.30 Total: -1.82 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.12 Total: -42.26 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.59 -7.71 -43.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.824 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds