Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47136 * 163.95724 * 3 2 1 5 5 N 1.46897 * 109.47298 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00122 * 170.00105 * 5 4 3 7 7 C 1.53246 * 109.33920 * 172.74589 * 6 5 4 8 8 N 1.47077 * 108.52284 * 53.82904 * 7 6 5 9 9 C 1.34774 * 120.88194 * 128.83612 * 8 7 6 10 10 O 1.21278 * 120.00251 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99924 * 179.97438 * 9 8 7 12 12 S 1.80995 * 109.47338 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00267 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00098 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46963 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47063 * 119.99722 * 17 15 13 20 20 H 1.48503 * 109.46668 * 239.99548 * 17 15 13 21 21 C 1.47081 * 118.23534 * 308.81269 * 8 7 6 22 22 C 1.46897 * 110.99998 * 45.69378 * 5 4 3 23 23 H 1.09001 * 109.47315 * 43.95715 * 3 2 1 24 24 H 1.08997 * 109.47054 * 283.95703 * 3 2 1 25 25 H 1.09004 * 109.47489 * 59.99606 * 4 3 2 26 26 H 1.08997 * 109.47132 * 299.99932 * 4 3 2 27 27 H 1.08997 * 109.49724 * 52.78734 * 6 5 4 28 28 H 1.09005 * 109.49070 * 292.70056 * 6 5 4 29 29 H 1.09006 * 109.62559 * 173.53557 * 7 6 5 30 30 H 1.08996 * 109.62828 * 293.92300 * 7 6 5 31 31 H 1.08997 * 109.47574 * 300.00211 * 11 9 8 32 32 H 1.09005 * 109.46878 * 60.00094 * 11 9 8 33 33 H 0.97003 * 119.99517 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.62944 * 170.89122 * 21 8 7 35 35 H 1.08999 * 109.63243 * 291.47520 * 21 8 7 36 36 H 1.08999 * 109.49205 * 67.29797 * 22 5 4 37 37 H 1.08997 * 109.51913 * 307.22880 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3872 -0.3986 5 7 4.5863 1.3877 -0.3992 6 6 5.1121 2.6201 -1.0013 7 6 6.6332 2.6646 -0.8202 8 7 7.2040 1.4188 -1.3545 9 6 8.2225 1.4471 -2.2366 10 8 8.6803 2.5096 -2.6005 11 6 8.7926 0.1584 -2.7709 12 16 10.1367 0.5263 -3.9258 13 6 10.6041 -1.1100 -4.3827 14 1 10.0860 -1.9577 -3.9591 15 6 11.6388 -1.3096 -5.2861 16 7 12.2705 -0.2764 -5.8019 17 14 12.1338 -3.0443 -5.7709 18 1 11.2744 -4.0222 -5.0565 19 1 11.9663 -3.2155 -7.2365 20 1 13.5545 -3.2742 -5.4048 21 6 6.6340 0.1413 -0.9001 22 6 5.1129 0.1962 -1.0781 23 1 2.9717 -0.7389 -0.7133 24 1 2.9714 -0.2470 0.9973 25 1 2.7537 2.1269 0.3146 26 1 2.7539 1.6349 -1.3959 27 1 4.6623 3.4844 -0.5127 28 1 4.8718 2.6368 -2.0644 29 1 7.0418 3.5169 -1.3632 30 1 6.8733 2.7560 0.2390 31 1 9.1767 -0.4393 -1.9443 32 1 8.0110 -0.3975 -3.2888 33 1 12.9934 -0.4159 -6.4336 34 1 7.0431 -0.6746 -1.4958 35 1 6.8743 -0.0133 0.1518 36 1 4.8726 0.2466 -2.1401 37 1 4.6637 -0.6978 -0.6455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -20.459349 kcal Electronic energy + Delta-G solvation = -19386.009524 eV Core-core repulsion = 16288.948996 eV Total energy + Delta-G solvation = -3097.060528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.15966 -39.32870 -37.69794 -35.91100 -34.56173 -33.06441 -31.70257 -30.67663 -27.93321 -27.50337 -24.84063 -23.82056 -22.11805 -20.28890 -19.44805 -18.66021 -18.05349 -16.94890 -16.85000 -16.72749 -16.33004 -16.13489 -15.88620 -15.66110 -15.29644 -14.63225 -14.52806 -14.47371 -14.32882 -13.70772 -13.54194 -13.23833 -13.13750 -13.07298 -12.89946 -12.75312 -12.57427 -12.27141 -12.15938 -12.05105 -11.67439 -11.58823 -11.13953 -10.83109 -10.22573 -9.78009 -9.24817 -8.65069 -8.32625 -6.10657 1.28506 1.43576 1.48836 1.59569 1.61210 1.76180 1.85559 2.13109 2.29665 2.72996 3.01904 3.28719 3.32830 3.70944 3.90800 3.98498 4.09728 4.19355 4.28554 4.33673 4.38905 4.49199 4.49926 4.60078 4.64523 4.83524 4.91520 4.95110 4.99834 5.05693 5.16814 5.44531 5.56826 5.95544 6.01450 6.22335 6.36547 6.64162 7.08964 7.18345 8.76826 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.003242 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.144502 B = 8633.270699 C = 9512.598589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.239 3.761 3 C -0.025 4.025 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.051 3.949 7 C 0.115 3.885 8 N -0.610 5.610 9 C 0.531 3.469 10 O -0.570 6.570 11 C -0.122 4.122 12 S -0.158 6.158 13 C -0.541 4.541 14 H 0.085 0.915 15 C 0.011 3.989 16 N -0.913 5.913 17 Si 0.999 3.001 18 H -0.253 1.253 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.102 3.898 22 C 0.028 3.972 23 H 0.133 0.867 24 H 0.148 0.852 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.109 0.891 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.270 0.730 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 -1.796 14.571 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.078 4.078 3 C -0.065 4.065 4 C -0.068 4.068 5 N -0.255 5.255 6 C -0.078 4.078 7 C -0.008 4.008 8 N -0.345 5.345 9 C 0.319 3.681 10 O -0.449 6.449 11 C -0.273 4.273 12 S 0.069 5.931 13 C -0.689 4.689 14 H 0.103 0.897 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.821 3.179 18 H -0.177 1.177 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.020 4.020 22 C -0.100 4.100 23 H 0.151 0.849 24 H 0.165 0.835 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.127 0.873 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.267 -0.185 14.427 23.278 hybrid contribution 0.242 -1.598 -1.125 1.969 sum -18.025 -1.783 13.302 22.472 Atomic orbital electron populations 1.81304 1.15350 1.10370 1.11371 1.29668 0.95629 0.91452 0.91059 1.19695 0.78861 0.99525 1.08403 1.22019 0.86593 0.96870 1.01269 1.62041 1.07091 1.02014 1.54352 1.22410 0.93763 0.94044 0.97543 1.21741 0.92833 0.86348 0.99858 1.48202 1.33626 1.09374 1.43293 1.20161 0.79622 0.89942 0.78373 1.90675 1.61018 1.33330 1.59880 1.23353 1.02117 0.98703 1.03085 1.85649 1.40117 1.13417 1.53924 1.23220 1.22313 0.92178 1.31156 0.89681 1.26147 0.95134 1.03024 0.95017 1.70201 1.22637 1.32586 1.29525 0.84897 0.78237 0.76699 0.78062 1.17692 1.20144 1.20102 1.22187 0.93448 0.84284 1.02064 1.22818 0.94183 0.95429 0.97583 0.84917 0.83484 0.88722 0.94386 0.87297 0.95419 0.91043 0.89311 0.87245 0.87350 0.92082 0.88746 0.88475 0.94736 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.25 18.54 20.01 0.37 -9.87 16 2 C 0.24 2.77 15.43 89.44 1.38 4.15 16 3 C -0.03 -0.06 4.95 28.79 0.14 0.08 16 4 C 0.06 0.37 5.22 86.30 0.45 0.82 16 5 N -0.53 -5.05 4.78 -895.25 -4.28 -9.33 16 6 C 0.05 0.72 5.58 86.39 0.48 1.20 16 7 C 0.11 2.35 6.60 86.35 0.57 2.92 16 8 N -0.61 -14.94 3.01 -817.92 -2.46 -17.40 16 9 C 0.53 19.26 7.73 87.66 0.68 19.94 16 10 O -0.57 -26.26 15.31 -3.02 -0.05 -26.31 16 11 C -0.12 -4.64 4.52 71.24 0.32 -4.32 16 12 S -0.16 -8.67 20.57 -56.49 -1.16 -9.84 16 13 C -0.54 -30.17 9.50 67.95 0.65 -29.53 16 14 H 0.09 4.36 7.80 -2.91 -0.02 4.34 16 15 C 0.01 0.63 5.49 84.86 0.47 1.10 16 16 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 17 Si 1.00 42.71 29.55 68.60 2.03 44.74 16 18 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 C 0.10 1.53 6.50 86.35 0.56 2.09 16 22 C 0.03 0.26 5.04 86.39 0.44 0.70 16 23 H 0.13 -0.09 6.18 -2.39 -0.01 -0.11 16 24 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.04 0.31 8.08 -2.39 -0.02 0.29 16 27 H 0.11 1.10 8.11 -2.39 -0.02 1.08 16 28 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.07 1.85 7.06 -2.38 -0.02 1.84 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 3.73 8.00 -2.40 -0.02 3.71 16 32 H 0.11 3.68 7.66 -2.39 -0.02 3.66 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.09 1.43 6.02 -2.39 -0.01 1.42 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.13 0.26 5.73 -2.39 -0.01 0.24 16 Total: -1.00 -82.30 324.68 1.95 -80.36 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.07 Total: 3.85 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.13 Total: -0.85 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -6.08 Total: -91.95 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -82.30 1.95 -80.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.899 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds