Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 O 1.42898 * 110.87178 * 219.38109 * 11 10 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 15 15 H 1.09008 * 111.03635 * 277.41090 * 14 11 10 16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10 17 17 C 1.34776 * 120.00084 * 161.35426 * 16 14 11 18 18 O 1.21695 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.46657 * 120.00337 * 179.97438 * 17 16 14 20 20 C 1.37924 * 126.22091 * 179.97438 * 19 17 16 21 21 C 1.39927 * 107.11343 * 180.02562 * 20 19 17 22 22 F 1.35095 * 126.07522 * 179.97438 * 21 20 19 23 23 C 1.35565 * 107.84119 * 359.97438 * 21 20 19 24 24 N 1.35750 * 108.83410 * 359.74217 * 23 21 20 25 25 H 0.97004 * 125.68344 * 180.28907 * 24 23 21 26 26 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 29 29 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 30 30 H 0.96700 * 114.00884 * 293.61196 * 13 11 10 31 31 H 0.97000 * 120.00071 * 341.34892 * 16 14 11 32 32 H 1.08007 * 126.44369 * 0.03196 * 20 19 17 33 33 H 1.08002 * 125.58424 * 180.02562 * 23 21 20 34 34 H 1.09002 * 110.36696 * 85.26297 * 26 9 7 35 35 H 1.08995 * 110.36608 * 323.05133 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 1 -0.6304 -4.4236 0.9788 13 8 -1.5623 -4.3257 -0.8786 14 6 0.8538 -4.6579 -0.6131 15 1 0.8592 -4.5979 -1.7015 16 7 1.0335 -6.0411 -0.1654 17 6 1.8677 -6.8626 -0.8331 18 8 2.4712 -6.4554 -1.8083 19 6 2.0481 -8.2472 -0.3846 20 6 2.8642 -9.1933 -0.9687 21 6 2.7317 -10.3690 -0.2216 22 9 3.3638 -11.5388 -0.4606 23 6 1.8563 -10.1254 0.7844 24 7 1.4384 -8.8367 0.6993 25 1 0.8124 -8.4039 1.3008 26 6 1.9335 -3.7312 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5607 -2.0564 -0.8839 29 1 -0.5575 -2.0898 0.9015 30 1 -2.4008 -3.9664 -0.5579 31 1 0.5523 -6.3658 0.6117 32 1 3.4882 -9.0530 -1.8390 33 1 1.5460 -10.8385 1.5339 34 1 2.1668 -4.0420 1.0178 35 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077408947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -49.545218 kcal Electronic energy + Delta-G solvation = -21834.937313 eV Core-core repulsion = 18170.402351 eV Total energy + Delta-G solvation = -3664.534962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.70392 -41.50167 -39.38295 -37.78570 -35.16184 -34.24477 -31.87451 -31.07006 -29.72705 -28.29329 -27.03368 -24.65474 -23.09231 -21.14892 -20.72605 -20.49912 -20.23631 -19.12153 -17.14789 -16.94146 -16.21906 -15.96046 -15.83535 -15.58796 -15.05085 -14.83168 -14.57357 -14.16943 -13.97333 -13.62346 -13.55619 -13.22908 -12.74902 -12.53142 -12.15514 -11.92577 -11.60104 -11.31416 -10.95666 -10.82691 -10.27817 -10.13665 -9.99261 -9.88896 -9.44023 -9.19598 -9.02895 -8.70321 -8.52083 -6.97093 -5.80834 -3.15478 1.14928 2.19512 2.63503 3.02714 3.27098 3.37951 3.42105 3.43328 4.28204 4.39273 4.52583 4.60881 4.76103 5.00706 5.07203 5.32559 5.36268 5.48089 5.57145 5.71335 5.73359 5.97262 6.01219 6.17392 6.36341 6.55677 6.57652 6.75910 6.90556 7.24141 7.39378 7.48574 7.67810 8.01295 8.10833 8.17351 9.10001 9.70265 10.32827 11.31200 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.003502 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.179661 B = 7993.073131 C = 8487.797550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.106 0.894 16 N -0.713 5.713 17 C 0.586 3.414 18 O -0.517 6.517 19 C -0.017 4.017 20 C -0.133 4.133 21 C 0.002 3.998 22 F -0.128 7.128 23 C -0.003 4.003 24 N -0.527 5.527 25 H 0.426 0.574 26 C 0.130 3.870 27 H 0.254 0.746 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.377 0.623 31 H 0.391 0.609 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.023 0.977 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -18.224 4.629 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.074 0.926 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.124 0.876 16 N -0.363 5.363 17 C 0.372 3.628 18 O -0.392 6.392 19 C -0.132 4.132 20 C -0.160 4.160 21 C -0.024 4.024 22 F -0.107 7.107 23 C -0.140 4.140 24 N -0.125 5.125 25 H 0.264 0.736 26 C 0.002 3.998 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.225 0.775 31 H 0.224 0.776 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.041 0.959 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.065 -17.884 3.625 18.279 hybrid contribution -0.457 0.895 1.103 1.492 sum -1.521 -16.989 4.728 17.700 Atomic orbital electron populations 1.69899 1.04956 1.25412 1.56941 1.24814 0.95787 0.97811 1.01858 0.86131 0.78445 0.82760 0.78034 1.20963 1.21542 1.21087 1.19054 0.90565 0.82011 1.44204 0.90100 1.44290 1.01100 0.99851 1.87483 1.21869 0.85489 0.87589 1.02288 1.23440 0.85451 0.98703 0.91498 0.92562 1.86470 1.18701 1.79913 1.51713 1.22331 0.94768 0.78319 1.01102 0.87557 1.45806 1.45747 1.12774 1.31959 1.16909 0.79855 0.82753 0.83257 1.90892 1.46917 1.75243 1.26143 1.20440 1.04071 0.94849 0.93790 1.21333 1.01967 0.90547 1.02137 1.16477 1.01844 0.83602 1.00454 1.91448 1.80676 1.44310 1.94256 1.21730 1.02247 0.87169 1.02809 1.41747 1.36526 1.10121 1.24073 0.73561 1.21845 0.94931 0.85692 0.97288 0.93557 0.91955 0.93210 0.77547 0.77613 0.82183 0.80077 0.95934 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.34 55.49 0.57 -25.79 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.02 3.40 -169.85 -0.58 -15.60 16 10 C 0.15 3.51 5.16 -2.92 -0.02 3.49 16 11 C 0.07 1.20 3.95 -24.90 -0.10 1.10 16 12 H 0.06 0.83 8.00 -51.93 -0.42 0.41 16 13 O -0.56 -9.12 13.40 -35.23 -0.47 -9.59 16 14 C 0.14 2.51 3.04 -65.78 -0.20 2.31 16 15 H 0.11 2.22 7.73 -51.92 -0.40 1.82 16 16 N -0.71 -9.83 5.23 -53.04 -0.28 -10.11 16 17 C 0.59 8.84 7.78 -12.86 -0.10 8.74 16 18 O -0.52 -9.96 16.63 5.19 0.09 -9.87 16 19 C -0.02 -0.20 7.05 -81.98 -0.58 -0.78 16 20 C -0.13 -1.63 10.66 -39.06 -0.42 -2.05 16 21 C 0.00 0.02 7.98 -39.90 -0.32 -0.30 16 22 F -0.13 -1.48 17.32 2.25 0.04 -1.44 16 23 C 0.00 -0.02 11.90 -16.77 -0.20 -0.22 16 24 N -0.53 -4.16 6.00 -9.31 -0.06 -4.22 16 25 H 0.43 1.97 8.19 -40.82 -0.33 1.64 16 26 C 0.13 2.70 6.92 -2.53 -0.02 2.69 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.06 1.62 7.31 -51.93 -0.38 1.24 16 29 H 0.05 1.23 7.52 -51.93 -0.39 0.84 16 30 H 0.38 4.54 9.12 45.56 0.42 4.96 16 31 H 0.39 3.92 7.64 -40.82 -0.31 3.61 16 32 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -34.14 307.44 -6.32 -40.46 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.05 Total: 6.52 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.19 Total: 8.19 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.34 Total: -55.71 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.39 Total: -19.47 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.14 -6.32 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077408947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds