Wall clock time and date at job start Wed Apr 15 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 O 1.42898 * 110.87178 * 219.38109 * 11 10 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 15 15 H 1.09008 * 111.03635 * 277.41090 * 14 11 10 16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10 17 17 C 1.34776 * 120.00084 * 161.35426 * 16 14 11 18 18 O 1.21695 * 120.00165 * 359.97438 * 17 16 14 19 19 C 1.46657 * 120.00337 * 179.97438 * 17 16 14 20 20 C 1.37924 * 126.22091 * 179.97438 * 19 17 16 21 21 C 1.39927 * 107.11343 * 180.02562 * 20 19 17 22 22 F 1.35095 * 126.07522 * 179.97438 * 21 20 19 23 23 C 1.35565 * 107.84119 * 359.97438 * 21 20 19 24 24 N 1.35750 * 108.83410 * 359.74217 * 23 21 20 25 25 H 0.97004 * 125.68344 * 180.28907 * 24 23 21 26 26 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 29 29 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 30 30 H 0.96700 * 114.00884 * 293.61196 * 13 11 10 31 31 H 0.97000 * 120.00071 * 341.34892 * 16 14 11 32 32 H 1.08007 * 126.44369 * 0.03196 * 20 19 17 33 33 H 1.08002 * 125.58424 * 180.02562 * 23 21 20 34 34 H 1.09002 * 110.36696 * 85.26297 * 26 9 7 35 35 H 1.08995 * 110.36608 * 323.05133 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 1 -0.6304 -4.4236 0.9788 13 8 -1.5623 -4.3257 -0.8786 14 6 0.8538 -4.6579 -0.6131 15 1 0.8592 -4.5979 -1.7015 16 7 1.0335 -6.0411 -0.1654 17 6 1.8677 -6.8626 -0.8331 18 8 2.4712 -6.4554 -1.8083 19 6 2.0481 -8.2472 -0.3846 20 6 2.8642 -9.1933 -0.9687 21 6 2.7317 -10.3690 -0.2216 22 9 3.3638 -11.5388 -0.4606 23 6 1.8563 -10.1254 0.7844 24 7 1.4384 -8.8367 0.6993 25 1 0.8124 -8.4039 1.3008 26 6 1.9335 -3.7312 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5607 -2.0564 -0.8839 29 1 -0.5575 -2.0898 0.9015 30 1 -2.4008 -3.9664 -0.5579 31 1 0.5523 -6.3658 0.6117 32 1 3.4882 -9.0530 -1.8390 33 1 1.5460 -10.8385 1.5339 34 1 2.1668 -4.0420 1.0178 35 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077408947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:02 Heat of formation + Delta-G solvation = -78.080515 kcal Electronic energy + Delta-G solvation = -21836.174696 eV Core-core repulsion = 18170.402351 eV Total energy + Delta-G solvation = -3665.772345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.52086 -42.36322 -40.68529 -39.24611 -36.69134 -35.72223 -33.71856 -31.90917 -30.92729 -29.83323 -28.62389 -26.45065 -24.24750 -22.41349 -22.16839 -21.63353 -21.38019 -20.18684 -19.00683 -18.32641 -17.40548 -17.17562 -16.80749 -16.59172 -16.47692 -16.06713 -15.79256 -15.73691 -15.21910 -14.77534 -14.54669 -14.49793 -14.40985 -14.15907 -13.79089 -13.19231 -13.16812 -12.80644 -12.71432 -12.70249 -12.14496 -11.89065 -11.59067 -11.45694 -10.94219 -10.78044 -10.37220 -10.00366 -9.32169 -8.98343 -7.90295 -5.27213 0.23492 1.39471 1.45745 1.49033 1.54937 1.79706 1.97919 2.16575 2.46958 3.09106 3.30200 3.41397 3.49484 3.78112 3.88914 4.01663 4.06154 4.14623 4.26617 4.40934 4.51818 4.54823 4.80903 4.88734 4.92086 5.27050 5.36283 5.38870 5.43183 5.65075 5.72092 6.12015 6.27658 6.44616 6.85728 7.01875 7.04468 7.67603 8.29821 9.19358 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.003502 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.179661 B = 7993.073131 C = 8487.797550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.159 3.841 11 C 0.094 3.906 12 H 0.100 0.900 13 O -0.569 6.569 14 C 0.154 3.846 15 H 0.073 0.927 16 N -0.695 5.695 17 C 0.588 3.412 18 O -0.570 6.570 19 C -0.038 4.038 20 C -0.146 4.146 21 C -0.032 4.032 22 F -0.136 7.136 23 C 0.045 3.955 24 N -0.505 5.505 25 H 0.445 0.555 26 C 0.130 3.870 27 H 0.250 0.750 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.398 0.602 31 H 0.414 0.586 32 H 0.146 0.854 33 H 0.231 0.769 34 H 0.044 0.956 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -20.169 6.851 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.033 3.967 11 C 0.034 3.966 12 H 0.118 0.882 13 O -0.376 6.376 14 C 0.048 3.952 15 H 0.091 0.909 16 N -0.346 5.346 17 C 0.377 3.623 18 O -0.448 6.448 19 C -0.152 4.152 20 C -0.174 4.174 21 C -0.056 4.056 22 F -0.115 7.115 23 C -0.093 4.093 24 N -0.104 5.104 25 H 0.287 0.713 26 C 0.004 3.996 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.248 0.752 31 H 0.251 0.749 32 H 0.163 0.837 33 H 0.248 0.752 34 H 0.061 0.939 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.910 -19.855 5.898 20.800 hybrid contribution -0.200 1.401 0.414 1.474 sum -2.110 -18.454 6.312 19.617 Atomic orbital electron populations 1.70100 1.06090 1.25662 1.57672 1.25624 0.96730 1.00884 1.01996 0.85139 0.77228 0.78661 0.78212 1.20733 1.21644 1.20006 1.19403 0.91011 0.83517 1.44009 0.90187 1.44555 1.02295 1.00704 1.87432 1.21698 0.84211 0.91444 0.99299 1.23116 0.85514 0.94370 0.93607 0.88214 1.86438 1.19431 1.79668 1.52106 1.21780 0.94294 0.80075 0.99085 0.90887 1.45443 1.45766 1.10819 1.32579 1.17271 0.78842 0.83817 0.82393 1.90869 1.48946 1.76482 1.28521 1.19728 1.06196 0.93241 0.96064 1.21422 1.01968 0.91799 1.02184 1.16663 1.03879 0.83122 1.01985 1.91425 1.81095 1.44504 1.94484 1.22417 0.98698 0.86938 1.01286 1.41716 1.35819 1.10029 1.22807 0.71251 1.21928 0.94967 0.84711 0.98033 0.94084 0.96082 0.95282 0.75186 0.74866 0.83651 0.75240 0.93860 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.30 10.34 21.65 0.22 -55.07 16 2 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 3 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.14 10.28 84.03 0.86 -13.28 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.78 3.40 -691.29 -2.35 -34.14 16 10 C 0.16 7.40 5.16 86.68 0.45 7.85 16 11 C 0.09 3.11 3.95 31.78 0.13 3.23 16 12 H 0.10 2.51 8.00 -2.39 -0.02 2.49 16 13 O -0.57 -17.37 13.40 -148.98 -2.00 -19.36 16 14 C 0.15 5.47 3.04 46.38 0.14 5.61 16 15 H 0.07 3.13 7.73 -2.38 -0.02 3.11 16 16 N -0.69 -17.85 5.23 -439.93 -2.30 -20.15 16 17 C 0.59 17.40 7.78 86.44 0.67 18.07 16 18 O -0.57 -22.72 16.63 -4.33 -0.07 -22.79 16 19 C -0.04 -0.84 7.05 40.36 0.28 -0.56 16 20 C -0.15 -3.51 10.66 22.60 0.24 -3.27 16 21 C -0.03 -0.62 7.98 22.06 0.18 -0.44 16 22 F -0.14 -2.94 17.32 44.97 0.78 -2.16 16 23 C 0.05 0.49 11.90 83.47 0.99 1.49 16 24 N -0.51 -5.87 6.00 -183.38 -1.10 -6.97 16 25 H 0.44 1.77 8.19 -92.71 -0.76 1.01 16 26 C 0.13 5.45 6.92 86.86 0.60 6.05 16 27 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.02 1.14 7.31 -2.38 -0.02 1.12 16 29 H 0.03 1.45 7.52 -2.39 -0.02 1.43 16 30 H 0.40 8.67 9.12 -74.06 -0.68 7.99 16 31 H 0.41 6.72 7.64 -92.71 -0.71 6.01 16 32 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.23 0.30 8.06 -2.91 -0.02 0.28 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.76 307.44 -0.75 -79.51 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -0.97 Total: 11.76 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 5.01 Total: 21.91 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -5.53 Total: -116.33 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -2.07 Total: -42.15 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.76 -0.75 -79.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077408947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.430 kcal (2) G-P(sol) polarization free energy of solvation -78.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds