Wall clock time and date at job start Wed Apr 15 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99626 * 2 1 4 4 O 1.20825 * 120.00647 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99759 * 179.97438 * 3 2 1 6 6 O 1.42903 * 109.46973 * 179.97438 * 5 3 2 7 7 C 1.42901 * 113.99787 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47082 * 179.97438 * 7 6 5 9 9 O 1.21304 * 120.00152 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99798 * 180.27334 * 8 7 6 11 11 C 1.40595 * 119.99764 * 179.72414 * 10 8 7 12 12 C 1.40646 * 126.08311 * 359.69131 * 11 10 8 13 13 N 1.30914 * 108.38784 * 179.87895 * 12 11 10 14 14 N 1.40065 * 108.40439 * 0.38138 * 13 12 11 15 15 C 1.37327 * 126.06489 * 179.73676 * 14 13 12 16 16 H 1.08003 * 119.99416 * 174.15969 * 15 14 13 17 17 C 1.38979 * 120.00372 * 354.16004 * 15 14 13 18 18 N 1.31300 * 119.99795 * 5.93274 * 17 15 14 19 19 Si 1.86793 * 120.00339 * 185.93961 * 17 15 14 20 20 H 1.48508 * 109.47464 * 94.97550 * 19 17 15 21 21 H 1.48497 * 109.47452 * 214.97875 * 19 17 15 22 22 H 1.48508 * 109.47127 * 334.97858 * 19 17 15 23 23 C 1.35686 * 126.08204 * 180.02562 * 11 10 8 24 24 H 1.09002 * 109.46861 * 60.00296 * 1 2 3 25 25 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47147 * 300.00264 * 1 2 3 27 27 H 1.09004 * 109.47176 * 59.99592 * 5 3 2 28 28 H 1.09005 * 109.46934 * 299.99791 * 5 3 2 29 29 H 1.09004 * 109.47297 * 59.99875 * 7 6 5 30 30 H 1.08998 * 109.47290 * 300.00345 * 7 6 5 31 31 H 0.97001 * 120.00137 * 359.73317 * 10 8 7 32 32 H 1.07998 * 125.80732 * 0.02562 * 12 11 10 33 33 H 0.96997 * 119.99732 * 180.02562 * 18 17 15 34 34 H 1.07995 * 126.24184 * 359.92839 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 8 3.9714 2.6454 -0.0001 7 6 5.3881 2.8326 0.0009 8 6 5.6999 4.3070 -0.0006 9 8 4.7976 5.1178 -0.0029 10 7 6.9813 4.7247 -0.0055 11 6 7.2721 6.1002 -0.0128 12 6 6.3315 7.1458 -0.0218 13 7 6.9788 8.2837 -0.0240 14 7 8.3526 8.0109 -0.0253 15 6 9.3618 8.9422 -0.0328 16 1 10.3899 8.6252 0.0621 17 6 9.0602 10.2927 -0.1623 18 7 7.8084 10.6889 -0.1604 19 14 10.4356 11.5441 -0.3393 20 1 10.6704 11.8214 -1.7793 21 1 10.0524 12.8019 0.3509 22 1 11.6777 11.0040 0.2696 23 6 8.5103 6.6552 -0.0187 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.9564 0.7806 -0.8891 28 1 3.9556 0.7810 0.8909 29 1 5.8164 2.3701 -0.8883 30 1 5.8149 2.3715 0.8916 31 1 7.7028 4.0764 -0.0042 32 1 5.2577 7.0297 -0.0239 33 1 7.5979 11.6314 -0.2512 34 1 9.4492 6.1215 -0.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118572932.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:08 Heat of formation + Delta-G solvation = -66.464419 kcal Electronic energy + Delta-G solvation = -20966.043107 eV Core-core repulsion = 17288.401684 eV Total energy + Delta-G solvation = -3677.641423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68339 -39.92197 -38.85093 -37.56704 -36.47208 -34.18242 -33.14810 -30.47035 -30.08404 -28.63230 -27.36849 -26.32293 -24.62571 -21.50445 -21.14922 -20.44286 -19.40339 -18.06146 -17.69581 -17.19252 -17.12996 -16.39130 -16.19531 -16.07132 -15.42146 -14.94264 -14.50663 -14.31742 -13.85668 -13.53891 -13.31818 -13.09104 -12.85726 -12.52909 -12.29815 -12.08767 -11.67215 -11.40132 -11.25697 -11.09591 -10.90969 -10.61085 -10.51560 -10.16369 -10.07048 -9.16478 -9.12202 -8.77889 -8.03568 -6.69363 -6.54235 -4.21298 1.95065 1.97613 2.81788 3.03674 3.05678 3.11692 3.21111 3.68608 3.84069 4.16184 4.42696 4.44691 4.68164 4.73526 4.77225 4.80609 4.89905 4.92358 5.02728 5.13290 5.19809 5.21588 6.03832 6.24977 6.43877 6.61049 6.91554 6.97674 7.14817 7.25926 7.52029 7.88094 8.18091 8.29213 8.65223 8.86045 9.40052 9.69143 10.42067 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.063935 B = 0.002558 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.838621 B =10942.693768 C =11350.043813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.457 3.543 4 O -0.475 6.475 5 C 0.071 3.929 6 O -0.340 6.340 7 C 0.051 3.949 8 C 0.496 3.504 9 O -0.509 6.509 10 N -0.623 5.623 11 C -0.059 4.059 12 C -0.032 4.032 13 N -0.261 5.261 14 N -0.143 5.143 15 C -0.324 4.324 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.083 4.083 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.397 0.603 32 H 0.176 0.824 33 H 0.275 0.725 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 -21.388 0.058 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.359 6.359 5 C -0.007 4.007 6 O -0.258 6.258 7 C -0.029 4.029 8 C 0.280 3.720 9 O -0.384 6.384 10 N -0.268 5.268 11 C -0.165 4.165 12 C -0.208 4.208 13 N -0.092 5.092 14 N 0.089 4.911 15 C -0.456 4.456 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.234 4.234 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.230 0.770 32 H 0.193 0.807 33 H 0.085 0.915 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.085 -18.838 0.047 19.512 hybrid contribution 1.113 -0.989 -0.074 1.491 sum -3.972 -19.827 -0.027 20.221 Atomic orbital electron populations 1.23295 0.75666 1.03749 1.02927 1.86434 1.23859 1.32909 1.84745 1.23210 0.91444 0.81755 0.73844 1.90769 1.66568 1.36094 1.42459 1.21666 0.88592 0.86142 1.04304 1.88116 1.20883 1.21243 1.95558 1.22245 0.82233 0.95771 1.02678 1.19817 0.83051 0.89512 0.79582 1.90669 1.45333 1.54609 1.47742 1.42303 1.06376 1.05969 1.72112 1.17228 0.93251 0.82039 1.23950 1.24146 1.00019 0.88859 1.07780 1.78265 0.85586 1.19664 1.25657 1.44558 1.05029 1.02326 1.39178 1.19867 0.86602 0.86229 1.52933 0.86605 1.25652 0.97560 0.98396 0.95537 1.70229 1.17362 1.16908 1.35040 0.85811 0.79981 0.79386 0.78945 1.19657 1.20120 1.18799 1.21239 0.96447 0.85685 1.19984 0.91679 0.87875 0.91686 0.88639 0.88633 0.89974 0.89977 0.77008 0.80690 0.91453 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.35 10.57 -39.26 -0.41 -3.77 16 3 C 0.46 5.38 8.03 36.01 0.29 5.67 16 4 O -0.47 -7.84 16.25 -25.48 -0.41 -8.25 16 5 C 0.07 0.64 6.53 36.01 0.24 0.87 16 6 O -0.34 -4.83 9.41 -64.76 -0.61 -5.44 16 7 C 0.05 0.58 6.42 36.01 0.23 0.81 16 8 C 0.50 8.78 7.88 -10.99 -0.09 8.69 16 9 O -0.51 -11.86 13.65 -14.37 -0.20 -12.05 16 10 N -0.62 -10.76 5.47 -10.00 -0.05 -10.81 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.95 16 12 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 13 N -0.26 -7.75 10.42 30.80 0.32 -7.42 16 14 N -0.14 -3.97 3.74 -11.41 -0.04 -4.01 16 15 C -0.32 -8.63 10.24 -14.82 -0.15 -8.78 16 16 H 0.12 2.74 7.84 -52.48 -0.41 2.33 16 17 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 18 N -0.77 -21.81 11.84 55.49 0.66 -21.15 16 19 Si 0.93 19.07 29.55 -169.99 -5.02 14.04 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 23 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 4.87 8.83 -40.82 -0.36 4.51 16 32 H 0.18 4.80 5.92 -52.49 -0.31 4.49 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -39.22 312.53 -4.13 -43.35 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.60 Total: 6.27 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.54 Total: 4.54 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.88 Total: -43.40 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.63 Total: -29.51 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -39.22 -4.13 -43.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118572932.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.116 kcal (2) G-P(sol) polarization free energy of solvation -39.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds