Wall clock time and date at job start Wed Apr 15 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99626 * 2 1 4 4 O 1.20825 * 120.00647 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99759 * 179.97438 * 3 2 1 6 6 O 1.42903 * 109.46973 * 179.97438 * 5 3 2 7 7 C 1.42901 * 113.99787 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47082 * 179.97438 * 7 6 5 9 9 O 1.21304 * 120.00152 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99798 * 180.27334 * 8 7 6 11 11 C 1.40595 * 119.99764 * 179.72414 * 10 8 7 12 12 C 1.40646 * 126.08311 * 359.69131 * 11 10 8 13 13 N 1.30914 * 108.38784 * 179.87895 * 12 11 10 14 14 N 1.40065 * 108.40439 * 0.38138 * 13 12 11 15 15 C 1.37327 * 126.06489 * 179.73676 * 14 13 12 16 16 H 1.08003 * 119.99416 * 174.15969 * 15 14 13 17 17 C 1.38979 * 120.00372 * 354.16004 * 15 14 13 18 18 N 1.31300 * 119.99795 * 5.93274 * 17 15 14 19 19 Si 1.86793 * 120.00339 * 185.93961 * 17 15 14 20 20 H 1.48508 * 109.47464 * 94.97550 * 19 17 15 21 21 H 1.48497 * 109.47452 * 214.97875 * 19 17 15 22 22 H 1.48508 * 109.47127 * 334.97858 * 19 17 15 23 23 C 1.35686 * 126.08204 * 180.02562 * 11 10 8 24 24 H 1.09002 * 109.46861 * 60.00296 * 1 2 3 25 25 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47147 * 300.00264 * 1 2 3 27 27 H 1.09004 * 109.47176 * 59.99592 * 5 3 2 28 28 H 1.09005 * 109.46934 * 299.99791 * 5 3 2 29 29 H 1.09004 * 109.47297 * 59.99875 * 7 6 5 30 30 H 1.08998 * 109.47290 * 300.00345 * 7 6 5 31 31 H 0.97001 * 120.00137 * 359.73317 * 10 8 7 32 32 H 1.07998 * 125.80732 * 0.02562 * 12 11 10 33 33 H 0.96997 * 119.99732 * 180.02562 * 18 17 15 34 34 H 1.07995 * 126.24184 * 359.92839 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 8 3.9714 2.6454 -0.0001 7 6 5.3881 2.8326 0.0009 8 6 5.6999 4.3070 -0.0006 9 8 4.7976 5.1178 -0.0029 10 7 6.9813 4.7247 -0.0055 11 6 7.2721 6.1002 -0.0128 12 6 6.3315 7.1458 -0.0218 13 7 6.9788 8.2837 -0.0240 14 7 8.3526 8.0109 -0.0253 15 6 9.3618 8.9422 -0.0328 16 1 10.3899 8.6252 0.0621 17 6 9.0602 10.2927 -0.1623 18 7 7.8084 10.6889 -0.1604 19 14 10.4356 11.5441 -0.3393 20 1 10.6704 11.8214 -1.7793 21 1 10.0524 12.8019 0.3509 22 1 11.6777 11.0040 0.2696 23 6 8.5103 6.6552 -0.0187 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.9564 0.7806 -0.8891 28 1 3.9556 0.7810 0.8909 29 1 5.8164 2.3701 -0.8883 30 1 5.8149 2.3715 0.8916 31 1 7.7028 4.0764 -0.0042 32 1 5.2577 7.0297 -0.0239 33 1 7.5979 11.6314 -0.2512 34 1 9.4492 6.1215 -0.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118572932.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:08 Heat of formation + Delta-G solvation = -97.176703 kcal Electronic energy + Delta-G solvation = -20967.374892 eV Core-core repulsion = 17288.401684 eV Total energy + Delta-G solvation = -3678.973208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71332 -41.51185 -40.32327 -38.60577 -37.39841 -35.89781 -34.96454 -32.29079 -31.16395 -29.97661 -28.55720 -27.31990 -26.41016 -22.92506 -22.30504 -22.06873 -21.19427 -19.39491 -18.91614 -18.27017 -17.97379 -17.61306 -17.35399 -17.20639 -16.96751 -16.43723 -15.75967 -15.74970 -15.15129 -15.05465 -14.78874 -14.38195 -14.29177 -13.49183 -13.37622 -13.24099 -13.13190 -12.93232 -12.85293 -12.76860 -12.05839 -11.85610 -11.83386 -11.52213 -11.02018 -10.83649 -10.81394 -10.61665 -10.09613 -8.51832 -8.46418 -6.23865 1.09999 1.22503 1.23253 1.40684 1.53602 1.59157 1.87615 2.03130 2.23138 2.52178 2.87634 3.09273 3.25877 3.71509 3.90390 4.22394 4.22679 4.27986 4.31340 4.32081 4.42396 4.45954 4.63002 4.70177 5.01741 5.08732 5.27929 5.30629 5.48286 5.86641 5.97997 6.33250 6.70402 6.74587 6.80490 7.44165 7.50240 7.69602 8.53355 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.063935 B = 0.002558 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.838621 B =10942.693768 C =11350.043813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.455 3.545 4 O -0.538 6.538 5 C 0.070 3.930 6 O -0.394 6.394 7 C 0.063 3.937 8 C 0.487 3.513 9 O -0.575 6.575 10 N -0.610 5.610 11 C -0.043 4.043 12 C -0.066 4.066 13 N -0.314 5.314 14 N -0.170 5.170 15 C -0.353 4.353 16 H 0.144 0.856 17 C -0.010 4.010 18 N -0.827 5.827 19 Si 1.021 2.979 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.240 1.240 23 C -0.075 4.075 24 H 0.057 0.943 25 H 0.141 0.859 26 H 0.057 0.943 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.426 0.574 32 H 0.160 0.840 33 H 0.275 0.725 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -24.731 0.023 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.298 3.702 4 O -0.427 6.427 5 C -0.006 4.006 6 O -0.314 6.314 7 C -0.015 4.015 8 C 0.275 3.725 9 O -0.454 6.454 10 N -0.257 5.257 11 C -0.149 4.149 12 C -0.241 4.241 13 N -0.146 5.146 14 N 0.061 4.939 15 C -0.484 4.484 16 H 0.162 0.838 17 C -0.221 4.221 18 N -0.456 5.456 19 Si 0.840 3.160 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.162 1.162 23 C -0.226 4.226 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.264 0.736 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.167 -22.304 0.017 22.409 hybrid contribution 0.107 -0.180 -0.053 0.216 sum -2.060 -22.484 -0.035 22.578 Atomic orbital electron populations 1.23573 0.74588 1.05984 1.02294 1.86444 1.24981 1.31610 1.83974 1.24034 0.92871 0.81365 0.71894 1.90752 1.68092 1.38124 1.45692 1.22058 0.86308 0.84215 1.08069 1.88037 1.22459 1.24690 1.96171 1.22326 0.81699 0.90369 1.07110 1.21234 0.81976 0.92357 0.76982 1.90658 1.47267 1.57178 1.50251 1.42230 1.07816 1.03933 1.71760 1.17316 0.92102 0.84377 1.21125 1.24128 1.00001 0.90282 1.09666 1.78156 0.87467 1.21451 1.27528 1.44873 1.04399 1.04114 1.40504 1.20650 0.87568 0.86877 1.53325 0.83850 1.26942 1.00268 1.00649 0.94243 1.70425 1.20418 1.17384 1.37329 0.84553 0.76810 0.75714 0.78949 1.19214 1.20369 1.16241 1.22050 0.98313 0.84535 1.17656 0.92400 0.84125 0.92398 0.84571 0.84547 0.85245 0.85222 0.73591 0.82334 0.91485 0.78836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -5.91 10.57 -51.42 -0.54 -6.45 16 3 C 0.45 10.19 8.03 71.24 0.57 10.77 16 4 O -0.54 -18.34 16.25 28.40 0.46 -17.88 16 5 C 0.07 1.00 6.53 71.24 0.47 1.47 16 6 O -0.39 -10.32 9.41 -120.75 -1.14 -11.46 16 7 C 0.06 1.17 6.42 71.24 0.46 1.63 16 8 C 0.49 16.54 7.88 87.66 0.69 17.23 16 9 O -0.58 -27.70 13.65 15.93 0.22 -27.49 16 10 N -0.61 -19.63 5.47 -303.92 -1.66 -21.29 16 11 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 12 C -0.07 -3.73 10.85 85.42 0.93 -2.81 16 13 N -0.31 -19.56 10.42 -56.47 -0.59 -20.15 16 14 N -0.17 -9.52 3.74 -190.02 -0.71 -10.23 16 15 C -0.35 -18.78 10.24 84.01 0.86 -17.92 16 16 H 0.14 6.51 7.84 -2.91 -0.02 6.49 16 17 C -0.01 -0.52 5.50 84.95 0.47 -0.05 16 18 N -0.83 -49.00 11.84 21.66 0.26 -48.74 16 19 Si 1.02 38.99 29.55 68.60 2.03 41.02 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 21 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.24 -8.12 7.11 99.48 0.71 -7.41 16 23 C -0.08 -3.43 11.49 83.38 0.96 -2.47 16 24 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 25 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 27 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.43 8.57 8.83 -92.71 -0.82 7.75 16 32 H 0.16 9.42 5.92 -2.91 -0.02 9.40 16 33 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.19 6.66 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -96.12 312.53 5.51 -90.61 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.33 Total: 24.38 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.85 Total: 7.69 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -2.70 Total: -100.42 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -1.00 Total: -63.28 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -96.12 5.51 -90.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118572932.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.569 kcal (2) G-P(sol) polarization free energy of solvation -96.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds