Wall clock time and date at job start Wed Apr 15 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35064 * 119.92948 * 2 1 4 4 C 1.41197 * 119.62337 * 179.79932 * 3 2 1 5 5 O 1.21792 * 120.10074 * 180.27474 * 4 3 2 6 6 N 1.34696 * 119.79252 * 0.44020 * 4 3 2 7 7 C 1.38561 * 132.26495 * 179.79093 * 6 4 3 8 8 C 1.38666 * 133.89544 * 0.02562 * 7 6 4 9 9 C 1.37947 * 119.85078 * 180.02562 * 8 7 6 10 10 C 1.38724 * 120.42093 * 0.02562 * 9 8 7 11 11 C 1.37662 * 120.51149 * 359.97230 * 10 9 8 12 12 C 1.39781 * 119.78611 * 0.02562 * 11 10 9 13 13 N 1.35774 * 133.36036 * 179.97438 * 12 11 10 14 14 C 1.31319 * 109.84386 * 180.02562 * 13 12 11 15 15 N 1.36403 * 119.92405 * 180.27611 * 2 1 3 16 16 C 1.46500 * 119.79390 * 359.97438 * 15 2 1 17 17 C 1.50702 * 109.47093 * 89.99990 * 16 15 2 18 18 H 1.07998 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47203 * 90.00225 * 21 19 17 23 23 H 1.48507 * 109.47228 * 210.00035 * 21 19 17 24 24 H 1.48495 * 109.47436 * 330.00099 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.72322 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72423 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72404 * 1 2 3 28 28 H 1.07998 * 120.18474 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.07461 * 359.97369 * 8 7 6 30 30 H 1.07997 * 119.78775 * 179.97438 * 9 8 7 31 31 H 1.07997 * 119.74690 * 179.97438 * 10 9 8 32 32 H 1.08003 * 120.10516 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.46790 * 209.99691 * 16 15 2 34 34 H 1.08994 * 109.46782 * 330.00114 * 16 15 2 35 35 H 0.96998 * 119.99871 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1705 0.0000 4 6 3.5928 1.1630 0.0043 5 8 4.2093 2.2134 0.0094 6 7 4.2559 -0.0095 -0.0006 7 6 5.6072 -0.3159 -0.0020 8 6 6.7658 0.4459 0.0015 9 6 7.9968 -0.1765 -0.0019 10 6 8.0839 -1.5610 -0.0093 11 6 6.9441 -2.3330 -0.0128 12 6 5.6889 -1.7180 -0.0094 13 7 4.4174 -2.1943 -0.0119 14 6 3.5667 -1.1939 -0.0070 15 7 2.1875 -1.1822 -0.0057 16 6 1.4487 -2.4473 -0.0112 17 6 1.1949 -2.8745 -1.4339 18 1 1.5481 -2.2645 -2.2521 19 6 0.5117 -4.0442 -1.6910 20 7 0.0811 -4.7868 -0.6946 21 14 0.1964 -4.5734 -3.4544 22 1 1.3222 -5.4191 -3.9263 23 1 -1.0675 -5.3504 -3.5197 24 1 0.0838 -3.3716 -4.3194 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6428 2.1069 0.0004 29 1 6.7045 1.5241 0.0060 30 1 8.8986 0.4178 0.0004 31 1 9.0534 -2.0370 -0.0123 32 1 7.0196 -3.4104 -0.0182 33 1 2.0344 -3.2122 0.4989 34 1 0.4972 -2.3145 0.5036 35 1 -0.3992 -5.6099 -0.8755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013637015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:06 Heat of formation + Delta-G solvation = 69.159853 kcal Electronic energy + Delta-G solvation = -21764.370552 eV Core-core repulsion = 18535.752253 eV Total energy + Delta-G solvation = -3228.618299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.75292 -39.40025 -38.18034 -36.63935 -33.85853 -32.97342 -31.95296 -30.58896 -29.23409 -27.88036 -27.26127 -23.85528 -23.28167 -22.92227 -21.48647 -20.70828 -18.41690 -18.09734 -17.10945 -17.00954 -16.21787 -15.72548 -15.16952 -14.71198 -14.43063 -14.31809 -13.87183 -13.67222 -13.65319 -13.24648 -12.78832 -12.69116 -12.34445 -11.98916 -11.91029 -11.52551 -11.44791 -11.22015 -10.88911 -10.85445 -10.41981 -10.39469 -10.00482 -9.69965 -9.60417 -8.76046 -8.59428 -8.27599 -7.27147 -6.38125 -4.47740 0.99835 1.19826 1.71237 2.33121 2.62435 2.96169 3.14982 3.22352 3.25266 3.80492 4.06309 4.17755 4.32128 4.68990 4.87785 4.97932 5.13313 5.16430 5.22251 5.41125 5.53871 5.63655 5.66471 5.76860 5.85749 5.94019 6.21369 6.29275 6.45025 6.50443 6.59567 6.63077 6.83910 6.89064 7.06921 7.17419 7.54637 7.59024 7.70095 7.85085 8.20848 8.55383 9.20062 10.68854 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.006183 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.831387 B = 4527.232117 C = 5701.261412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.255 3.745 3 C -0.358 4.358 4 C 0.556 3.444 5 O -0.532 6.532 6 N -0.477 5.477 7 C 0.035 3.965 8 C -0.079 4.079 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.083 4.083 12 C 0.094 3.906 13 N -0.490 5.490 14 C 0.522 3.478 15 N -0.459 5.459 16 C 0.233 3.767 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 6.730 2.476 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.141 3.859 3 C -0.387 4.387 4 C 0.357 3.643 5 O -0.410 6.410 6 N -0.188 5.188 7 C -0.068 4.068 8 C -0.099 4.099 9 C -0.147 4.147 10 C -0.132 4.132 11 C -0.103 4.103 12 C -0.023 4.023 13 N -0.217 5.217 14 C 0.170 3.830 15 N -0.155 5.155 16 C 0.116 3.884 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.132 4.132 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.184 0.816 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.543 6.225 2.531 8.711 hybrid contribution -0.069 0.427 -0.985 1.076 sum 5.473 6.652 1.545 8.752 Atomic orbital electron populations 1.21245 0.86589 1.06413 1.04521 1.20911 0.95851 0.84051 0.85112 1.21128 0.91079 0.98762 1.27732 1.17248 0.88997 0.81522 0.76520 1.90794 1.70119 1.29972 1.50074 1.44610 1.06437 1.08668 1.59125 1.18693 0.82915 0.95800 1.09425 1.20146 0.89178 0.99741 1.00842 1.20832 0.96234 0.94666 1.02977 1.20889 0.97776 0.93582 1.00931 1.20213 0.88276 1.00181 1.01641 1.19062 0.92160 0.89194 1.01904 1.70750 0.97608 1.25530 1.27798 1.20154 0.85409 0.81220 0.96187 1.44022 0.99642 1.10013 1.61810 1.20144 0.91929 0.76453 0.99891 1.21199 1.37948 1.08264 0.90839 0.91854 1.24864 0.94736 0.95491 0.98090 1.69902 1.36885 1.14241 1.31173 0.86387 0.77930 0.78945 0.83648 1.20192 1.20791 1.19674 0.88956 0.87161 0.89034 0.81600 0.85351 0.85341 0.85282 0.84915 0.91773 0.92178 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.10 36.01 0.33 -1.36 16 2 C 0.26 4.31 6.67 -81.69 -0.55 3.76 16 3 C -0.36 -6.04 9.57 -39.59 -0.38 -6.42 16 4 C 0.56 11.20 7.61 -15.17 -0.12 11.09 16 5 O -0.53 -11.50 17.00 5.11 0.09 -11.41 16 6 N -0.48 -9.95 2.93 -63.78 -0.19 -10.14 16 7 C 0.03 0.68 6.93 -83.83 -0.58 0.10 16 8 C -0.08 -1.30 9.82 -39.53 -0.39 -1.69 16 9 C -0.13 -1.68 10.03 -39.51 -0.40 -2.07 16 10 C -0.11 -1.43 10.01 -39.61 -0.40 -1.83 16 11 C -0.08 -1.31 10.10 -39.22 -0.40 -1.70 16 12 C 0.09 1.86 7.22 -84.71 -0.61 1.25 16 13 N -0.49 -10.99 11.01 -11.34 -0.12 -11.12 16 14 C 0.52 11.36 8.19 -318.87 -2.61 8.74 16 15 N -0.46 -9.35 2.67 -114.22 -0.31 -9.65 16 16 C 0.23 5.22 4.69 -5.19 -0.02 5.19 16 17 C -0.54 -13.52 8.89 -34.44 -0.31 -13.82 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -23.16 13.29 55.43 0.74 -22.43 16 21 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.11 1.68 6.23 -51.93 -0.32 1.35 16 27 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.13 2.10 7.58 -52.49 -0.40 1.70 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.06 1.61 7.85 -51.93 -0.41 1.20 16 34 H 0.06 1.28 6.54 -51.93 -0.34 0.94 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -30.24 304.81 -10.29 -40.53 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.55 Total: 1.73 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -6.52 Total: 2.98 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.12 Total: -53.33 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.24 -10.29 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013637015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.691 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds