Wall clock time and date at job start Wed Apr 15 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35064 * 119.92948 * 2 1 4 4 C 1.41197 * 119.62337 * 179.79932 * 3 2 1 5 5 O 1.21792 * 120.10074 * 180.27474 * 4 3 2 6 6 N 1.34696 * 119.79252 * 0.44020 * 4 3 2 7 7 C 1.38561 * 132.26495 * 179.79093 * 6 4 3 8 8 C 1.38666 * 133.89544 * 0.02562 * 7 6 4 9 9 C 1.37947 * 119.85078 * 180.02562 * 8 7 6 10 10 C 1.38724 * 120.42093 * 0.02562 * 9 8 7 11 11 C 1.37662 * 120.51149 * 359.97230 * 10 9 8 12 12 C 1.39781 * 119.78611 * 0.02562 * 11 10 9 13 13 N 1.35774 * 133.36036 * 179.97438 * 12 11 10 14 14 C 1.31319 * 109.84386 * 180.02562 * 13 12 11 15 15 N 1.36403 * 119.92405 * 180.27611 * 2 1 3 16 16 C 1.46500 * 119.79390 * 359.97438 * 15 2 1 17 17 C 1.50702 * 109.47093 * 89.99990 * 16 15 2 18 18 H 1.07998 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47203 * 90.00225 * 21 19 17 23 23 H 1.48507 * 109.47228 * 210.00035 * 21 19 17 24 24 H 1.48495 * 109.47436 * 330.00099 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.72322 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72423 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72404 * 1 2 3 28 28 H 1.07998 * 120.18474 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.07461 * 359.97369 * 8 7 6 30 30 H 1.07997 * 119.78775 * 179.97438 * 9 8 7 31 31 H 1.07997 * 119.74690 * 179.97438 * 10 9 8 32 32 H 1.08003 * 120.10516 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.46790 * 209.99691 * 16 15 2 34 34 H 1.08994 * 109.46782 * 330.00114 * 16 15 2 35 35 H 0.96998 * 119.99871 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1705 0.0000 4 6 3.5928 1.1630 0.0043 5 8 4.2093 2.2134 0.0094 6 7 4.2559 -0.0095 -0.0006 7 6 5.6072 -0.3159 -0.0020 8 6 6.7658 0.4459 0.0015 9 6 7.9968 -0.1765 -0.0019 10 6 8.0839 -1.5610 -0.0093 11 6 6.9441 -2.3330 -0.0128 12 6 5.6889 -1.7180 -0.0094 13 7 4.4174 -2.1943 -0.0119 14 6 3.5667 -1.1939 -0.0070 15 7 2.1875 -1.1822 -0.0057 16 6 1.4487 -2.4473 -0.0112 17 6 1.1949 -2.8745 -1.4339 18 1 1.5481 -2.2645 -2.2521 19 6 0.5117 -4.0442 -1.6910 20 7 0.0811 -4.7868 -0.6946 21 14 0.1964 -4.5734 -3.4544 22 1 1.3222 -5.4191 -3.9263 23 1 -1.0675 -5.3504 -3.5197 24 1 0.0838 -3.3716 -4.3194 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6428 2.1069 0.0004 29 1 6.7045 1.5241 0.0060 30 1 8.8986 0.4178 0.0004 31 1 9.0534 -2.0370 -0.0123 32 1 7.0196 -3.4104 -0.0182 33 1 2.0344 -3.2122 0.4989 34 1 0.4972 -2.3145 0.5036 35 1 -0.3992 -5.6099 -0.8755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013637015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:05 Heat of formation + Delta-G solvation = 54.155107 kcal Electronic energy + Delta-G solvation = -21765.021207 eV Core-core repulsion = 18535.752253 eV Total energy + Delta-G solvation = -3229.268954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.20943 -40.79774 -39.72833 -37.92518 -35.54286 -34.65397 -33.40832 -31.87093 -30.64529 -29.20336 -28.88568 -25.54538 -24.67887 -24.37556 -22.86834 -22.11385 -19.86182 -19.50360 -18.91338 -18.38630 -17.82712 -17.34637 -16.60677 -16.22363 -15.80289 -15.64344 -15.38344 -15.13205 -14.94412 -14.66307 -14.24811 -14.04454 -13.74105 -13.44772 -13.02769 -13.00883 -12.93860 -12.69866 -12.58030 -12.33757 -12.20339 -11.92051 -11.47689 -11.43266 -11.13129 -10.70636 -9.96077 -9.58079 -8.74465 -8.29497 -6.46782 -0.33501 -0.21045 0.42809 0.85104 1.23022 1.38498 1.42070 1.49629 1.55151 2.29037 2.37144 2.79075 2.90643 3.01267 3.40635 3.54699 3.78778 3.91283 4.07404 4.21529 4.31011 4.36656 4.53309 4.66159 4.71285 4.77815 4.89240 4.94945 5.05546 5.12233 5.28627 5.37278 5.44621 5.50677 5.56271 5.63423 5.80633 5.89361 6.08228 6.35138 6.56345 6.73516 7.23602 8.75177 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.006183 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.831387 B = 4527.232117 C = 5701.261412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.253 3.747 3 C -0.353 4.353 4 C 0.540 3.460 5 O -0.557 6.557 6 N -0.482 5.482 7 C 0.005 3.995 8 C -0.099 4.099 9 C -0.101 4.101 10 C -0.091 4.091 11 C -0.092 4.092 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.497 3.503 15 N -0.468 5.468 16 C 0.251 3.749 17 C -0.550 4.550 18 H 0.049 0.951 19 C 0.033 3.967 20 N -0.911 5.911 21 Si 0.959 3.041 22 H -0.283 1.283 23 H -0.271 1.271 24 H -0.268 1.268 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.201 0.799 29 H 0.125 0.875 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.146 0.854 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 7.495 2.058 10.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.140 3.860 3 C -0.381 4.381 4 C 0.344 3.656 5 O -0.438 6.438 6 N -0.194 5.194 7 C -0.097 4.097 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.058 4.058 13 N -0.254 5.254 14 C 0.145 3.855 15 N -0.165 5.165 16 C 0.133 3.867 17 C -0.588 4.588 18 H 0.067 0.933 19 C -0.169 4.169 20 N -0.549 5.549 21 Si 0.784 3.216 22 H -0.210 1.210 23 H -0.196 1.196 24 H -0.192 1.192 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.146 0.854 28 H 0.218 0.782 29 H 0.143 0.857 30 H 0.192 0.808 31 H 0.197 0.803 32 H 0.163 0.837 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.652 7.004 2.116 9.888 hybrid contribution -0.199 0.192 -0.823 0.868 sum 6.453 7.196 1.293 9.752 Atomic orbital electron populations 1.21395 0.83421 1.06989 1.06326 1.21587 0.97644 0.82800 0.84009 1.21450 0.89638 1.00058 1.26949 1.17873 0.90218 0.81120 0.76395 1.90759 1.70802 1.30436 1.51764 1.44729 1.07082 1.08468 1.59148 1.19232 0.83286 0.96403 1.10823 1.20407 0.89593 0.99664 1.02234 1.21420 0.96285 0.95342 0.99003 1.21458 0.98675 0.93301 0.97575 1.20648 0.87752 1.01354 1.01432 1.19579 0.92470 0.89792 1.04008 1.70623 0.99232 1.26895 1.28611 1.20318 0.85956 0.81682 0.97561 1.43968 0.99326 1.10443 1.62785 1.19709 0.91725 0.76868 0.98376 1.21315 1.37617 1.08308 0.91544 0.93300 1.25526 0.94601 0.95490 1.01307 1.69973 1.37570 1.14653 1.32724 0.85538 0.77804 0.78525 0.79734 1.20954 1.19578 1.19218 0.86295 0.89424 0.85428 0.78249 0.85706 0.80792 0.80305 0.83667 0.95247 0.90921 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.10 71.24 0.65 -2.36 16 2 C 0.25 8.47 6.67 41.12 0.27 8.74 16 3 C -0.35 -11.72 9.57 22.27 0.21 -11.50 16 4 C 0.54 22.26 7.61 84.98 0.65 22.90 16 5 O -0.56 -24.52 17.00 -4.64 -0.08 -24.60 16 6 N -0.48 -20.95 2.93 -473.93 -1.39 -22.34 16 7 C 0.00 0.19 6.93 38.72 0.27 0.46 16 8 C -0.10 -3.20 9.82 22.30 0.22 -2.98 16 9 C -0.10 -2.31 10.03 22.32 0.22 -2.09 16 10 C -0.09 -1.98 10.01 22.25 0.22 -1.75 16 11 C -0.09 -2.79 10.10 22.51 0.23 -2.56 16 12 C 0.06 2.33 7.22 39.44 0.28 2.62 16 13 N -0.53 -24.90 11.01 -189.78 -2.09 -26.99 16 14 C 0.50 22.71 8.19 260.11 2.13 24.84 16 15 N -0.47 -19.75 2.67 -515.27 -1.38 -21.13 16 16 C 0.25 11.71 4.69 85.63 0.40 12.11 16 17 C -0.55 -28.02 8.89 25.60 0.23 -27.80 16 18 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 19 C 0.03 1.67 5.46 84.65 0.46 2.14 16 20 N -0.91 -48.35 13.29 21.45 0.28 -48.07 16 21 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.59 6.23 -2.39 -0.01 2.58 16 27 H 0.13 2.15 8.07 -2.38 -0.02 2.13 16 28 H 0.20 5.07 8.06 -2.91 -0.02 5.05 16 29 H 0.12 4.07 7.58 -2.91 -0.02 4.05 16 30 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.03 1.56 7.85 -2.38 -0.02 1.55 16 34 H 0.07 3.17 6.54 -2.39 -0.02 3.15 16 35 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -70.03 304.81 4.95 -65.08 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.12 Total: 12.19 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 6.45 Total: 22.78 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.57 Total: -118.52 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.08 Total: -24.60 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -70.03 4.95 -65.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013637015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.236 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds