Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21532 * 120.00045 * 0.02562 * 16 15 14 18 18 C 1.47999 * 120.00380 * 180.02562 * 16 15 14 19 19 C 1.39903 * 120.93771 * 0.02562 * 18 16 15 20 20 C 1.38045 * 119.03449 * 180.02562 * 19 18 16 21 21 N 1.31861 * 120.98010 * 0.02562 * 20 19 18 22 22 C 1.31721 * 122.09461 * 359.97438 * 21 20 19 23 23 C 1.38539 * 120.84865 * 359.71334 * 22 21 20 24 24 F 1.35099 * 120.53833 * 180.28677 * 23 22 21 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 28 28 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 29 29 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 31 31 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 32 32 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 33 33 H 1.08000 * 120.48446 * 359.97438 * 19 18 16 34 34 H 1.07993 * 119.51115 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.57811 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3955 -6.2375 2.1998 18 6 -0.5064 -4.7476 3.9981 19 6 -0.1265 -3.5133 4.5362 20 6 -0.5700 -3.1670 5.7968 21 7 -1.3403 -3.9803 6.4925 22 6 -1.7228 -5.1514 6.0265 23 6 -1.3304 -5.5778 4.7681 24 9 -1.7311 -6.7777 4.2940 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 2.9714 -3.2065 -1.9118 28 1 3.0422 -4.9242 -1.4507 29 1 1.3826 -4.5188 -3.1200 30 1 0.3131 -4.9198 -0.0486 31 1 1.7556 -5.6782 0.6673 32 1 1.0064 -3.4871 2.2843 33 1 0.5051 -2.8416 3.9740 34 1 -0.2811 -2.2163 6.2198 35 1 -2.3539 -5.7856 6.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676518428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -77.118731 kcal Electronic energy + Delta-G solvation = -21984.691771 eV Core-core repulsion = 18318.961132 eV Total energy + Delta-G solvation = -3665.730639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.95975 -40.44324 -39.02259 -37.16888 -35.00086 -33.72415 -32.78861 -31.31577 -30.99655 -28.43906 -25.98999 -24.42506 -23.75449 -23.28727 -20.62302 -20.18187 -18.31593 -17.62850 -17.29602 -17.21780 -16.66286 -15.97962 -15.65528 -15.56503 -14.91061 -14.53091 -14.42725 -14.08826 -13.75322 -13.60326 -13.43230 -13.39465 -12.98939 -12.90136 -12.23679 -12.05832 -11.50730 -10.96689 -10.92284 -10.65304 -10.30773 -10.14323 -10.04557 -9.86626 -9.61339 -9.41852 -9.14664 -9.06575 -8.73874 -7.12512 -5.89202 -3.20333 0.46467 0.74194 2.90618 3.22052 3.33470 3.39501 3.42217 3.61691 3.83098 4.22695 4.45234 4.48078 4.57798 4.66541 4.86859 5.20250 5.31874 5.42232 5.47724 5.50313 5.62284 5.65469 5.81730 5.94296 5.96906 6.25844 6.35911 6.43152 6.64710 6.72806 7.55815 7.56181 7.71808 8.15029 8.27316 8.33971 9.39933 9.94182 10.30853 11.32107 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.005209 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.903289 B = 5373.808792 C = 6881.359194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.561 6.561 14 C 0.118 3.882 15 N -0.700 5.700 16 C 0.551 3.449 17 O -0.530 6.530 18 C -0.121 4.121 19 C -0.104 4.104 20 C 0.084 3.916 21 N -0.445 5.445 22 C 0.065 3.935 23 C 0.102 3.898 24 F -0.108 7.108 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.365 0.635 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.409 0.591 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -8.655 8.055 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.352 5.352 16 C 0.336 3.664 17 O -0.408 6.408 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.073 4.073 21 N -0.154 5.154 22 C -0.094 4.094 23 C 0.079 3.921 24 F -0.086 7.086 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.209 0.791 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.247 0.753 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.289 -8.899 9.096 12.791 hybrid contribution 0.827 0.907 -1.537 1.967 sum 2.116 -7.992 7.559 11.202 Atomic orbital electron populations 1.69688 1.05103 1.25725 1.56626 1.24756 0.95445 0.97679 1.02476 0.86163 0.78754 0.84164 0.77285 1.20575 1.21853 1.21788 1.19260 0.90966 0.83977 1.43921 0.91078 1.42403 1.06065 0.99060 1.88060 1.20608 0.94998 0.86946 0.92063 0.91520 1.23018 0.86542 0.97375 0.95244 1.86566 1.32127 1.92101 1.25590 1.21638 0.99802 0.97185 0.81976 1.45865 1.49827 1.21545 1.17974 1.17868 0.79581 0.84785 0.84155 1.90815 1.56367 1.22178 1.71435 1.20710 1.00227 0.95939 0.96421 1.22516 0.98621 0.94700 0.96656 1.22836 0.93898 0.99322 0.91211 1.67578 1.09585 1.02750 1.35440 1.22933 1.00094 0.94334 0.92056 1.18899 0.96531 0.82744 0.93894 1.91605 1.87921 1.40928 1.88132 0.93397 0.77673 0.93225 0.95461 0.79056 0.90213 0.91721 0.75298 0.82678 0.81158 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 13.06 55.49 0.72 -25.60 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.71 -16.23 4.51 -53.42 -0.24 -16.47 16 10 C 0.17 2.98 2.84 -67.93 -0.19 2.79 16 11 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 12 C 0.06 0.99 6.86 37.16 0.25 1.25 16 13 O -0.56 -9.72 12.64 -35.23 -0.45 -10.16 16 14 C 0.12 2.03 5.12 -4.04 -0.02 2.01 16 15 N -0.70 -11.59 5.35 -61.20 -0.33 -11.91 16 16 C 0.55 9.55 7.79 -12.26 -0.10 9.45 16 17 O -0.53 -10.81 15.48 5.34 0.08 -10.72 16 18 C -0.12 -1.78 5.91 -104.60 -0.62 -2.40 16 19 C -0.10 -1.28 9.61 -39.03 -0.38 -1.65 16 20 C 0.08 0.92 11.17 -17.61 -0.20 0.73 16 21 N -0.44 -5.37 10.33 -13.24 -0.14 -5.51 16 22 C 0.07 0.75 11.17 -17.49 -0.20 0.56 16 23 C 0.10 1.43 7.33 -38.79 -0.28 1.15 16 24 F -0.11 -1.68 15.72 2.25 0.04 -1.64 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.36 4.53 9.12 45.56 0.42 4.94 16 30 H 0.08 1.56 7.39 -51.93 -0.38 1.18 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 6.51 6.28 -40.82 -0.26 6.26 16 33 H 0.16 1.74 6.54 -52.49 -0.34 1.40 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -32.24 313.07 -5.55 -37.79 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -2.97 Total: 16.43 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.97 Total: 7.17 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.02 Total: -59.49 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.36 Total: -20.89 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.24 -5.55 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676518428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.329 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds