Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21532 * 120.00045 * 0.02562 * 16 15 14 18 18 C 1.47999 * 120.00380 * 180.02562 * 16 15 14 19 19 C 1.39903 * 120.93771 * 0.02562 * 18 16 15 20 20 C 1.38045 * 119.03449 * 180.02562 * 19 18 16 21 21 N 1.31861 * 120.98010 * 0.02562 * 20 19 18 22 22 C 1.31721 * 122.09461 * 359.97438 * 21 20 19 23 23 C 1.38539 * 120.84865 * 359.71334 * 22 21 20 24 24 F 1.35099 * 120.53833 * 180.28677 * 23 22 21 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 28 28 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 29 29 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 31 31 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 32 32 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 33 33 H 1.08000 * 120.48446 * 359.97438 * 19 18 16 34 34 H 1.07993 * 119.51115 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.57811 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3955 -6.2375 2.1998 18 6 -0.5064 -4.7476 3.9981 19 6 -0.1265 -3.5133 4.5362 20 6 -0.5700 -3.1670 5.7968 21 7 -1.3403 -3.9803 6.4925 22 6 -1.7228 -5.1514 6.0265 23 6 -1.3304 -5.5778 4.7681 24 9 -1.7311 -6.7777 4.2940 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 2.9714 -3.2065 -1.9118 28 1 3.0422 -4.9242 -1.4507 29 1 1.3826 -4.5188 -3.1200 30 1 0.3131 -4.9198 -0.0486 31 1 1.7556 -5.6782 0.6673 32 1 1.0064 -3.4871 2.2843 33 1 0.5051 -2.8416 3.9740 34 1 -0.2811 -2.2163 6.2198 35 1 -2.3539 -5.7856 6.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676518428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -103.384050 kcal Electronic energy + Delta-G solvation = -21985.830721 eV Core-core repulsion = 18318.961132 eV Total energy + Delta-G solvation = -3666.869589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.07449 -41.55513 -40.27049 -38.61473 -36.44583 -35.34368 -34.01709 -32.92559 -31.97165 -30.10931 -27.26837 -25.76472 -25.37652 -24.36436 -21.90448 -21.63501 -19.66946 -19.13348 -18.44891 -18.34728 -18.13116 -17.15103 -17.02749 -16.81745 -16.30224 -16.11231 -15.49783 -15.39800 -15.25605 -14.90333 -14.74433 -14.57631 -14.38905 -14.29922 -13.69484 -13.17907 -13.06372 -12.77099 -12.65807 -12.21773 -11.87862 -11.73690 -11.55863 -11.12997 -11.00084 -10.73836 -10.69650 -10.17644 -10.08076 -9.00737 -7.88972 -5.18671 -0.62077 -0.20171 1.51416 1.53753 1.61904 1.66853 1.95370 2.57254 2.58973 2.82578 3.33201 3.38573 3.45041 3.55525 3.61170 3.65692 3.88684 3.98946 4.28489 4.41117 4.49708 4.55347 4.60947 4.66233 4.74236 4.84025 4.98747 5.20226 5.33767 5.42814 5.57501 6.29316 6.36884 6.62727 6.98806 7.06685 7.38094 8.08807 8.34778 9.33711 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.005209 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.903289 B = 5373.808792 C = 6881.359194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.305 1.305 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.723 5.723 10 C 0.161 3.839 11 H 0.085 0.915 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.128 3.872 15 N -0.695 5.695 16 C 0.549 3.451 17 O -0.568 6.568 18 C -0.140 4.140 19 C -0.103 4.103 20 C 0.094 3.906 21 N -0.452 5.452 22 C 0.079 3.921 23 C 0.082 3.918 24 F -0.123 7.123 25 H 0.248 0.752 26 H 0.372 0.628 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.386 0.614 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.164 0.836 34 H 0.204 0.796 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -8.481 9.170 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.233 1.233 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.052 3.948 11 H 0.102 0.898 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.003 3.997 15 N -0.346 5.346 16 C 0.335 3.665 17 O -0.448 6.448 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.062 4.062 21 N -0.160 5.160 22 C -0.080 4.080 23 C 0.059 3.941 24 F -0.101 7.101 25 H 0.057 0.943 26 H 0.204 0.796 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.234 0.766 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.181 0.819 34 H 0.221 0.779 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.776 -8.753 10.203 13.726 hybrid contribution 0.419 0.778 -1.882 2.079 sum 3.196 -7.975 8.321 11.961 Atomic orbital electron populations 1.69846 1.06645 1.25706 1.59389 1.25447 0.96057 1.00696 1.03866 0.85182 0.78442 0.80468 0.76234 1.18835 1.23281 1.22133 1.19644 0.91528 0.84667 1.40837 0.89905 1.42504 1.05364 1.00201 1.88197 1.20867 0.95138 0.85174 0.93610 0.89760 1.22889 0.86536 0.98720 0.93574 1.86522 1.32945 1.92270 1.27452 1.21493 0.98751 0.97625 0.81785 1.45821 1.49602 1.21555 1.17668 1.18280 0.78938 0.84217 0.85051 1.90784 1.57753 1.23739 1.72557 1.20650 1.01619 0.97419 0.95442 1.22630 0.98660 0.93763 0.97250 1.23368 0.92426 1.00066 0.90371 1.67712 1.09850 1.02925 1.35517 1.23367 0.99217 0.94309 0.91063 1.19178 0.97436 0.82504 0.94947 1.91562 1.88220 1.41829 1.88487 0.94295 0.79610 0.94339 0.91612 0.76646 0.92870 0.89965 0.74858 0.81895 0.77935 0.78044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.75 13.06 21.65 0.28 -55.47 16 2 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.97 42.80 29.55 68.60 2.03 44.83 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.24 -11.55 9.93 84.04 0.83 -10.72 16 8 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.72 -32.45 4.51 -322.93 -1.46 -33.91 16 10 C 0.16 5.59 2.84 44.99 0.13 5.72 16 11 H 0.08 2.65 8.08 -2.39 -0.02 2.63 16 12 C 0.06 1.98 6.86 71.98 0.49 2.47 16 13 O -0.59 -19.66 12.64 -148.98 -1.88 -21.54 16 14 C 0.13 4.31 5.12 86.38 0.44 4.75 16 15 N -0.70 -22.87 5.35 -465.84 -2.49 -25.36 16 16 C 0.55 19.21 7.79 86.83 0.68 19.88 16 17 O -0.57 -23.68 15.48 -3.81 -0.06 -23.74 16 18 C -0.14 -4.06 5.91 -19.85 -0.12 -4.18 16 19 C -0.10 -2.37 9.61 22.63 0.22 -2.15 16 20 C 0.09 1.84 11.17 84.64 0.95 2.78 16 21 N -0.45 -9.77 10.33 -195.81 -2.02 -11.79 16 22 C 0.08 1.69 11.17 84.78 0.95 2.64 16 23 C 0.08 2.26 7.33 22.78 0.17 2.43 16 24 F -0.12 -3.87 15.72 44.97 0.71 -3.17 16 25 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 26 H 0.37 19.19 7.80 -92.71 -0.72 18.47 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.39 9.02 9.12 -74.06 -0.68 8.34 16 30 H 0.05 2.10 7.39 -2.38 -0.02 2.09 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.41 12.94 6.28 -92.71 -0.58 12.35 16 33 H 0.16 3.45 6.54 -2.91 -0.02 3.43 16 34 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.75 313.07 -0.51 -70.25 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -0.81 Total: 39.38 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 5.20 Total: 20.51 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.69 Total: -126.53 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.94 Total: -45.28 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.71 Total: -3.17 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -69.75 -0.51 -70.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676518428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.129 kcal (2) G-P(sol) polarization free energy of solvation -69.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds