Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21528 * 119.99804 * 359.97438 * 16 15 14 18 18 C 1.48046 * 119.99977 * 180.02562 * 16 15 14 19 19 C 1.39385 * 119.69235 * 179.72093 * 18 16 15 20 20 C 1.38467 * 119.09348 * 179.78908 * 19 18 16 21 21 C 1.38903 * 118.46628 * 0.47466 * 20 19 18 22 22 F 1.35108 * 120.34731 * 179.76899 * 21 20 19 23 23 C 1.38874 * 119.30159 * 359.74558 * 21 20 19 24 24 N 1.31457 * 120.85306 * 0.02562 * 23 21 20 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 28 28 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 29 29 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 31 31 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 32 32 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 33 33 H 1.07994 * 120.45336 * 0.02562 * 19 18 16 34 34 H 1.07996 * 120.76343 * 180.22340 * 20 19 18 35 35 H 1.08000 * 119.57354 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3963 -6.2362 -2.2067 18 6 -0.5051 -4.7466 -4.0059 19 6 -1.3167 -5.5975 -4.7543 20 6 -1.7343 -5.1959 -6.0119 21 6 -1.3169 -3.9581 -6.4842 22 9 -1.6980 -3.5305 -7.7079 23 6 -0.5043 -3.1646 -5.6851 24 7 -0.1277 -3.5708 -4.4930 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 3.0418 -4.9245 1.4445 28 1 2.9707 -3.2069 1.9060 29 1 1.3816 -4.5196 3.1134 30 1 1.7558 -5.6780 -0.6740 31 1 0.3131 -4.9198 0.0415 32 1 1.0071 -3.4867 -2.2909 33 1 -1.6190 -6.5552 -4.3571 34 1 -2.3666 -5.8322 -6.6134 35 1 -0.1769 -2.2015 -6.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755625131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -78.626395 kcal Electronic energy + Delta-G solvation = -21689.293204 eV Core-core repulsion = 18023.497188 eV Total energy + Delta-G solvation = -3665.796017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.24419 -40.54760 -38.75998 -37.07646 -34.91787 -33.58136 -32.68926 -31.57890 -30.92548 -28.30598 -25.76379 -24.29682 -23.81782 -23.38717 -20.55653 -20.06145 -18.20843 -17.72829 -17.54053 -17.21190 -16.58420 -16.07572 -15.61551 -15.28589 -15.02536 -14.58890 -14.17185 -14.02670 -13.84415 -13.61790 -13.33957 -13.21092 -12.95170 -12.74645 -12.60949 -11.96042 -11.41387 -10.87124 -10.82050 -10.57489 -10.21591 -10.19365 -10.08430 -9.76412 -9.62407 -9.34989 -9.20057 -8.95289 -8.58340 -7.00675 -5.77897 -3.08283 0.36980 0.88020 2.74361 3.35216 3.41747 3.46659 3.48672 3.73362 3.75240 4.11936 4.46491 4.55012 4.56444 4.76604 4.93982 5.17495 5.41709 5.49036 5.53614 5.57567 5.59908 5.67046 5.89266 6.03517 6.05883 6.30592 6.37050 6.51907 6.74123 6.85949 7.45840 7.65376 7.95979 8.21408 8.38562 8.48653 9.51051 10.05939 10.42263 11.43703 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.005010 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.053579 B = 5587.188388 C = 7288.965901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.116 3.884 15 N -0.687 5.687 16 C 0.565 3.435 17 O -0.546 6.546 18 C 0.076 3.924 19 C -0.086 4.086 20 C -0.118 4.118 21 C 0.063 3.937 22 F -0.127 7.127 23 C 0.080 3.920 24 N -0.420 5.420 25 H 0.255 0.745 26 H 0.389 0.611 27 H 0.027 0.973 28 H 0.049 0.951 29 H 0.364 0.636 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -10.757 -9.592 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.009 4.009 15 N -0.338 5.338 16 C 0.349 3.651 17 O -0.425 6.425 18 C -0.062 4.062 19 C -0.107 4.107 20 C -0.144 4.144 21 C 0.041 3.959 22 F -0.106 7.106 23 C -0.082 4.082 24 N -0.130 5.130 25 H 0.065 0.935 26 H 0.223 0.777 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.208 0.792 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.259 0.741 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.252 -10.662 -9.329 14.169 hybrid contribution -0.041 0.919 -0.314 0.972 sum 0.210 -9.743 -9.643 13.710 Atomic orbital electron populations 1.69684 1.05095 1.25657 1.56776 1.24737 0.95427 0.97616 1.02581 0.86226 0.78604 0.83992 0.77492 1.21677 1.21859 1.20858 1.19198 0.90882 0.84029 1.43722 0.91199 1.42365 1.06056 0.99025 1.87941 1.20594 0.95069 0.87011 0.91929 0.91567 1.23038 0.86496 0.97308 0.95348 1.86571 1.32168 1.92090 1.25521 1.21655 0.99757 0.97154 0.82295 1.45893 1.48560 1.21998 1.17336 1.17694 0.79377 0.84409 0.83611 1.90760 1.57788 1.22650 1.71285 1.21419 0.97597 0.91093 0.96117 1.22046 0.94839 1.01168 0.92673 1.21643 1.00701 0.95269 0.96817 1.19095 0.99184 0.95178 0.82434 1.91539 1.89364 1.89728 1.39964 1.23018 0.95241 1.00405 0.89528 1.67716 1.19476 1.13921 1.11914 0.93482 0.77658 0.95509 0.93256 0.79161 0.91779 0.90256 0.74059 0.82416 0.82923 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.71 -17.16 4.51 -53.43 -0.24 -17.40 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 11 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 12 C 0.06 1.03 6.85 37.16 0.25 1.28 16 13 O -0.56 -9.94 12.64 -35.23 -0.45 -10.38 16 14 C 0.12 2.07 5.12 -4.04 -0.02 2.05 16 15 N -0.69 -12.42 5.38 -61.18 -0.33 -12.75 16 16 C 0.57 9.95 7.81 -12.24 -0.10 9.85 16 17 O -0.55 -10.51 16.32 5.34 0.09 -10.42 16 18 C 0.08 1.16 6.75 -83.02 -0.56 0.60 16 19 C -0.09 -1.04 9.63 -39.07 -0.38 -1.41 16 20 C -0.12 -1.17 10.15 -39.25 -0.40 -1.57 16 21 C 0.06 0.69 7.36 -39.10 -0.29 0.40 16 22 F -0.13 -1.36 17.28 2.25 0.04 -1.32 16 23 C 0.08 0.98 11.17 -17.48 -0.20 0.78 16 24 N -0.42 -6.37 9.53 -9.74 -0.09 -6.46 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.39 10.45 7.80 -40.82 -0.32 10.13 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.36 4.62 9.12 45.56 0.42 5.04 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 32 H 0.42 8.01 7.46 -40.82 -0.30 7.71 16 33 H 0.16 1.70 7.64 -52.49 -0.40 1.30 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -32.25 316.87 -5.70 -37.95 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -3.07 Total: 18.00 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -2.12 Total: 7.97 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.06 Total: -63.42 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.36 Total: -20.81 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.25 -5.70 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.676 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds