Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21528 * 119.99804 * 359.97438 * 16 15 14 18 18 C 1.48046 * 119.99977 * 180.02562 * 16 15 14 19 19 C 1.39385 * 119.69235 * 179.72093 * 18 16 15 20 20 C 1.38467 * 119.09348 * 179.78908 * 19 18 16 21 21 C 1.38903 * 118.46628 * 0.47466 * 20 19 18 22 22 F 1.35108 * 120.34731 * 179.76899 * 21 20 19 23 23 C 1.38874 * 119.30159 * 359.74558 * 21 20 19 24 24 N 1.31457 * 120.85306 * 0.02562 * 23 21 20 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 28 28 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 29 29 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 31 31 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 32 32 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 33 33 H 1.07994 * 120.45336 * 0.02562 * 19 18 16 34 34 H 1.07996 * 120.76343 * 180.22340 * 20 19 18 35 35 H 1.08000 * 119.57354 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3963 -6.2362 -2.2067 18 6 -0.5051 -4.7466 -4.0059 19 6 -1.3167 -5.5975 -4.7543 20 6 -1.7343 -5.1959 -6.0119 21 6 -1.3169 -3.9581 -6.4842 22 9 -1.6980 -3.5305 -7.7079 23 6 -0.5043 -3.1646 -5.6851 24 7 -0.1277 -3.5708 -4.4930 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 3.0418 -4.9245 1.4445 28 1 2.9707 -3.2069 1.9060 29 1 1.3816 -4.5196 3.1134 30 1 1.7558 -5.6780 -0.6740 31 1 0.3131 -4.9198 0.0415 32 1 1.0071 -3.4867 -2.2909 33 1 -1.6190 -6.5552 -4.3571 34 1 -2.3666 -5.8322 -6.6134 35 1 -0.1769 -2.2015 -6.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755625131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -105.012217 kcal Electronic energy + Delta-G solvation = -21690.437380 eV Core-core repulsion = 18023.497188 eV Total energy + Delta-G solvation = -3666.940192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.12321 -41.65479 -40.04263 -38.56237 -36.40194 -35.26192 -33.75929 -33.12137 -32.16578 -30.04066 -27.07439 -25.69976 -25.24817 -24.62899 -21.80933 -21.60113 -19.59612 -19.09690 -18.60601 -18.41667 -18.11674 -17.09575 -16.98146 -16.64034 -16.31980 -16.11091 -15.55137 -15.33361 -15.00626 -14.84380 -14.76578 -14.62212 -14.21854 -14.14011 -13.63284 -13.60973 -13.02555 -12.75865 -12.62417 -12.25081 -11.88616 -11.72865 -11.45897 -11.12207 -10.97569 -10.72885 -10.68301 -10.26196 -9.95074 -8.98718 -7.88160 -5.17319 -0.64352 -0.01379 1.50591 1.51553 1.55057 1.59426 2.09555 2.59180 2.64030 2.79656 3.07463 3.44275 3.59233 3.63297 3.67658 3.78198 3.91118 4.02438 4.14292 4.45020 4.56992 4.59357 4.62634 4.70065 4.77525 4.88429 5.01837 5.22758 5.40220 5.44381 5.56098 6.30277 6.34686 6.64753 7.07795 7.10870 7.38404 8.10718 8.35842 9.34869 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.005010 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.053579 B = 5587.188388 C = 7288.965901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.722 5.722 10 C 0.159 3.841 11 H 0.078 0.922 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.126 3.874 15 N -0.693 5.693 16 C 0.563 3.437 17 O -0.569 6.569 18 C 0.047 3.953 19 C -0.080 4.080 20 C -0.101 4.101 21 C 0.074 3.926 22 F -0.121 7.121 23 C 0.070 3.930 24 N -0.451 5.451 25 H 0.247 0.753 26 H 0.372 0.628 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.386 0.614 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.415 0.585 33 H 0.170 0.830 34 H 0.193 0.807 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 -11.708 -10.750 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.015 4.015 13 O -0.390 6.390 14 C 0.002 3.998 15 N -0.342 5.342 16 C 0.348 3.652 17 O -0.449 6.449 18 C -0.090 4.090 19 C -0.101 4.101 20 C -0.127 4.127 21 C 0.052 3.948 22 F -0.100 7.100 23 C -0.091 4.091 24 N -0.161 5.161 25 H 0.056 0.944 26 H 0.203 0.797 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.234 0.766 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.041 -11.663 -10.467 15.706 hybrid contribution -0.269 1.114 -0.021 1.147 sum 0.772 -10.548 -10.488 14.895 Atomic orbital electron populations 1.69855 1.06709 1.25684 1.59512 1.25489 0.96130 1.00866 1.03916 0.85205 0.77668 0.79924 0.77292 1.21497 1.23009 1.19376 1.19612 0.91468 0.84861 1.40806 0.90071 1.42470 1.05326 1.00268 1.88160 1.20870 0.95077 0.85319 0.93719 0.90412 1.22853 0.86549 0.98705 0.93374 1.86523 1.32837 1.92254 1.27430 1.21522 0.98818 0.97507 0.81973 1.45924 1.49040 1.21877 1.17400 1.18102 0.78625 0.83920 0.84518 1.90727 1.58551 1.23445 1.72185 1.21194 0.99891 0.92325 0.95582 1.22186 0.93791 1.01021 0.93070 1.21995 0.99760 0.94963 0.95949 1.19084 0.98268 0.95230 0.82239 1.91562 1.89144 1.89717 1.39553 1.23307 0.95538 1.01321 0.88972 1.67607 1.20769 1.14391 1.13358 0.94376 0.79680 0.91384 0.94510 0.76633 0.89641 0.92536 0.74718 0.81257 0.79004 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.24 -12.47 9.93 84.03 0.83 -11.64 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.72 -35.11 4.51 -322.94 -1.46 -36.57 16 10 C 0.16 5.98 2.84 44.99 0.13 6.11 16 11 H 0.08 2.74 8.08 -2.39 -0.02 2.72 16 12 C 0.07 2.16 6.85 71.98 0.49 2.65 16 13 O -0.58 -20.13 12.64 -148.98 -1.88 -22.01 16 14 C 0.13 4.50 5.12 86.38 0.44 4.94 16 15 N -0.69 -25.44 5.38 -465.77 -2.50 -27.95 16 16 C 0.56 20.05 7.81 86.85 0.68 20.73 16 17 O -0.57 -21.99 16.32 -3.80 -0.06 -22.05 16 18 C 0.05 1.43 6.75 41.89 0.28 1.71 16 19 C -0.08 -1.79 9.63 22.60 0.22 -1.57 16 20 C -0.10 -1.70 10.15 22.48 0.23 -1.47 16 21 C 0.07 1.45 7.36 22.58 0.17 1.61 16 22 F -0.12 -2.25 17.28 44.97 0.78 -1.47 16 23 C 0.07 1.67 11.17 84.90 0.95 2.62 16 24 N -0.45 -13.68 9.53 -184.74 -1.76 -15.44 16 25 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 26 H 0.37 20.54 7.80 -92.71 -0.72 19.82 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.39 9.22 9.12 -74.05 -0.68 8.55 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.29 7.39 -2.39 -0.02 2.27 16 32 H 0.42 16.24 7.46 -92.71 -0.69 15.55 16 33 H 0.17 3.35 7.64 -2.91 -0.02 3.33 16 34 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -70.47 316.87 -0.62 -71.09 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -0.93 Total: 43.71 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 4.89 Total: 22.13 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -5.44 Total: -138.78 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.94 Total: -44.06 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.47 -0.62 -71.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.918 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds