Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.52993 * 109.47542 * 154.99721 * 10 9 7 15 15 N 1.46493 * 109.47346 * 305.00099 * 14 10 9 16 16 C 1.34781 * 120.00398 * 180.02562 * 15 14 10 17 17 O 1.21523 * 119.99802 * 359.97438 * 16 15 14 18 18 C 1.48052 * 120.00131 * 180.02562 * 16 15 14 19 19 C 1.39371 * 119.69173 * 179.72407 * 18 16 15 20 20 C 1.38471 * 119.09340 * 179.79026 * 19 18 16 21 21 C 1.38897 * 118.47053 * 0.47497 * 20 19 18 22 22 F 1.35095 * 120.35609 * 179.77217 * 21 20 19 23 23 C 1.38886 * 119.29418 * 359.74504 * 21 20 19 24 24 N 1.31459 * 120.85971 * 0.02562 * 23 21 20 25 25 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 28 28 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 29 29 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 30 30 H 1.09009 * 109.47018 * 64.99747 * 14 10 9 31 31 H 1.09002 * 109.47579 * 184.99417 * 14 10 9 32 32 H 0.96998 * 119.99959 * 359.97438 * 15 14 10 33 33 H 1.08003 * 120.45651 * 0.02562 * 19 18 16 34 34 H 1.07998 * 120.76589 * 180.21967 * 20 19 18 35 35 H 1.07999 * 119.57265 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4966 -2.2572 -0.6331 15 7 5.3536 -1.6583 -1.9623 16 6 6.4485 -1.3791 -2.6971 17 8 7.5544 -1.6237 -2.2567 18 6 6.3039 -0.7733 -4.0402 19 6 7.4406 -0.4818 -4.7921 20 6 7.2909 0.0806 -6.0485 21 6 6.0065 0.3426 -6.5079 22 9 5.8166 0.8950 -7.7260 23 6 4.9196 0.0301 -5.7018 24 7 5.0928 -0.5077 -4.5149 25 1 -0.4850 0.8400 0.0004 26 1 3.8645 -0.3622 -0.0119 27 1 3.2818 -3.0473 1.8842 28 1 4.7299 -3.9650 1.4055 29 1 5.2233 -2.3343 3.0795 30 1 6.0785 -1.5916 0.0046 31 1 6.0077 -3.2161 -0.7196 32 1 4.4709 -1.4634 -2.3140 33 1 8.4248 -0.6953 -4.4017 34 1 8.1530 0.3140 -6.6556 35 1 3.9190 0.2322 -6.0544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755625132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -75.387588 kcal Electronic energy + Delta-G solvation = -21797.607649 eV Core-core repulsion = 18131.952078 eV Total energy + Delta-G solvation = -3665.655571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.32704 -40.66051 -38.89722 -37.23978 -35.07049 -33.69967 -32.77917 -31.69496 -31.11427 -28.87740 -25.89591 -24.39025 -23.81326 -23.18361 -20.68347 -20.15862 -18.43449 -17.91811 -17.66028 -17.31165 -16.88364 -16.16245 -15.71986 -15.37539 -15.15764 -14.63343 -14.36124 -14.12289 -13.90380 -13.63936 -13.54048 -13.21322 -12.98818 -12.81431 -12.71184 -12.36065 -11.61653 -11.00376 -10.85238 -10.72035 -10.31821 -10.30658 -10.10995 -9.75556 -9.63164 -9.47044 -9.30112 -8.98623 -8.73682 -7.33426 -5.81144 -3.17348 0.26686 0.78201 2.62436 3.22055 3.39193 3.44526 3.46889 3.63119 3.64202 4.01154 4.37715 4.46765 4.58021 4.65359 4.80992 5.06776 5.21332 5.32582 5.40272 5.47034 5.50827 5.57062 5.79513 5.90708 5.92395 6.17360 6.23377 6.37578 6.59054 6.71509 7.34326 7.81145 7.91736 8.10228 8.33929 8.37693 9.15444 9.88312 10.07836 11.36531 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.005320 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.019568 B = 5261.424335 C = 6628.994740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.112 3.888 15 N -0.692 5.692 16 C 0.566 3.434 17 O -0.543 6.543 18 C 0.073 3.927 19 C -0.085 4.085 20 C -0.118 4.118 21 C 0.065 3.935 22 F -0.126 7.126 23 C 0.079 3.921 24 N -0.423 5.423 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.366 0.634 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.420 0.580 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -3.012 -9.733 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.061 3.939 11 H 0.093 0.907 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.012 4.012 15 N -0.343 5.343 16 C 0.350 3.650 17 O -0.421 6.421 18 C -0.065 4.065 19 C -0.106 4.106 20 C -0.144 4.144 21 C 0.043 3.957 22 F -0.105 7.105 23 C -0.082 4.082 24 N -0.133 5.133 25 H 0.070 0.930 26 H 0.199 0.801 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.211 0.789 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.259 0.741 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.660 -3.138 -9.475 16.918 hybrid contribution 0.657 1.370 -0.338 1.557 sum 14.317 -1.768 -9.814 17.447 Atomic orbital electron populations 1.69701 1.05113 1.25916 1.57057 1.24621 0.95133 0.97166 1.01572 0.86564 0.79228 0.84962 0.77834 1.21136 1.20247 1.21867 1.19032 0.80365 0.94707 1.43755 0.89127 1.42718 1.03922 1.01753 1.89710 1.20570 0.90354 0.90716 0.92294 0.90663 1.22999 0.93850 0.90432 0.94882 1.86518 1.72182 1.52013 1.26184 1.21713 0.98730 0.98457 0.82286 1.45929 1.09978 1.60776 1.17643 1.17711 0.84919 0.78882 0.83535 1.90766 1.25459 1.54368 1.71554 1.21405 0.89177 0.99744 0.96205 1.22046 1.00914 0.95038 0.92609 1.21660 0.96578 0.99316 0.96836 1.19093 0.95470 0.98503 0.82621 1.91542 1.95960 1.82558 1.40402 1.23042 0.99229 0.96494 0.89462 1.67714 1.24599 1.08586 1.12400 0.93023 0.80055 0.92683 0.95057 0.78851 0.90290 0.91304 0.74124 0.82363 0.82835 0.80644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 22.33 27.74 -169.99 -4.72 17.61 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.28 -6.72 6.51 56.52 0.37 -6.35 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 7 C -0.25 -6.69 10.41 -15.06 -0.16 -6.84 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.74 -16.75 4.31 -53.43 -0.23 -16.98 16 10 C 0.17 3.12 2.84 -67.93 -0.19 2.92 16 11 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 12 C 0.06 0.97 6.86 37.16 0.25 1.23 16 13 O -0.57 -9.29 12.64 -35.23 -0.45 -9.73 16 14 C 0.11 1.89 5.12 -4.05 -0.02 1.87 16 15 N -0.69 -11.85 5.38 -61.19 -0.33 -12.18 16 16 C 0.57 9.44 7.81 -12.23 -0.10 9.34 16 17 O -0.54 -9.94 16.32 5.35 0.09 -9.85 16 18 C 0.07 1.05 6.75 -83.02 -0.56 0.49 16 19 C -0.09 -0.96 9.63 -39.07 -0.38 -1.34 16 20 C -0.12 -1.09 10.15 -39.25 -0.40 -1.49 16 21 C 0.07 0.67 7.36 -39.10 -0.29 0.39 16 22 F -0.13 -1.28 17.28 2.25 0.04 -1.24 16 23 C 0.08 0.92 11.17 -17.47 -0.20 0.73 16 24 N -0.42 -6.10 9.53 -9.74 -0.09 -6.19 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.37 8.67 5.65 -40.82 -0.23 8.44 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.37 4.24 9.12 45.56 0.42 4.66 16 30 H 0.08 1.46 7.39 -51.92 -0.38 1.07 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.42 7.55 7.46 -40.82 -0.30 7.25 16 33 H 0.16 1.59 7.64 -52.48 -0.40 1.19 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -33.12 313.74 -5.34 -38.46 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -3.03 Total: 15.61 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.12 Total: 7.53 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.12 Total: -63.11 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.36 Total: -19.59 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.72 Total: 17.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.12 -5.34 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.930 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds