Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48503 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00157 * 3 2 1 6 6 H 1.48504 * 109.47211 * 59.99528 * 3 2 1 7 7 C 1.38817 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00352 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47202 * 34.99334 * 10 9 7 12 12 C 1.53005 * 109.46786 * 274.99960 * 10 9 7 13 13 O 1.42901 * 109.46977 * 294.99680 * 12 10 9 14 14 C 1.52993 * 109.47326 * 154.99572 * 10 9 7 15 15 N 1.46495 * 109.47530 * 305.00024 * 14 10 9 16 16 C 1.34775 * 120.00324 * 180.02562 * 15 14 10 17 17 O 1.21532 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.47996 * 120.00028 * 179.97438 * 16 15 14 19 19 N 1.32808 * 119.75187 * 359.97438 * 18 16 15 20 20 C 1.31432 * 121.66838 * 180.02562 * 19 18 16 21 21 C 1.38685 * 120.98032 * 359.97438 * 20 19 18 22 22 C 1.38439 * 119.39355 * 0.27475 * 21 20 19 23 23 C 1.38969 * 118.46638 * 359.50238 * 22 21 20 24 24 F 1.35109 * 120.50270 * 180.24260 * 23 22 21 25 25 H 0.97000 * 119.99883 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99775 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47126 * 54.99456 * 12 10 9 28 28 H 1.08994 * 109.47038 * 175.00004 * 12 10 9 29 29 H 0.96699 * 114.00202 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47248 * 184.99651 * 14 10 9 31 31 H 1.09007 * 109.46748 * 65.00057 * 14 10 9 32 32 H 0.97005 * 119.99275 * 359.97438 * 15 14 10 33 33 H 1.08003 * 119.51032 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.30062 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.77043 * 179.74931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9683 -3.5503 0.5917 12 6 2.4230 -4.0363 -1.4350 13 8 1.2293 -4.2895 -2.1786 14 6 1.1805 -4.7519 0.6112 15 7 0.7329 -4.3347 1.9422 16 6 -0.0566 -5.1466 2.6730 17 8 -0.3977 -6.2246 2.2275 18 6 -0.5083 -4.7253 4.0179 19 7 -0.1322 -3.5463 4.5001 20 6 -0.5107 -3.1348 5.6896 21 6 -1.3235 -3.9216 6.4919 22 6 -1.7363 -5.1608 6.0331 23 6 -1.3259 -5.5698 4.7700 24 9 -1.7086 -6.7692 4.2795 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.9729 -3.2172 -1.8985 28 1 3.0435 -4.9323 -1.4276 29 1 1.3851 -4.5366 -3.1004 30 1 1.7553 -5.6743 0.6937 31 1 0.3133 -4.9200 -0.0276 32 1 1.0054 -3.4743 2.2979 33 1 -0.1839 -2.1697 6.0475 34 1 -1.6276 -3.5728 7.4678 35 1 -2.3661 -5.7934 6.6411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755641882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -75.635028 kcal Electronic energy + Delta-G solvation = -21991.286690 eV Core-core repulsion = 18325.620389 eV Total energy + Delta-G solvation = -3665.666301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -48.93900 -40.39757 -38.80538 -37.05106 -34.86912 -33.52985 -32.72863 -31.41030 -30.95493 -28.30463 -25.85748 -24.32363 -23.65219 -23.29817 -20.52017 -20.03377 -18.10230 -17.62390 -17.47795 -17.07865 -16.56795 -15.99207 -15.55921 -15.47290 -14.85477 -14.52870 -14.15619 -13.96263 -13.63296 -13.35448 -13.31129 -13.23668 -12.95102 -12.75839 -12.49348 -11.94463 -11.39065 -10.86490 -10.82699 -10.54313 -10.19127 -10.14825 -10.04587 -9.75454 -9.54162 -9.32579 -9.14187 -8.94644 -8.52926 -6.99272 -5.76905 -3.07114 0.42737 0.86778 2.84415 3.31728 3.41662 3.47002 3.49524 3.75409 3.93486 4.13510 4.46064 4.55974 4.63028 4.73139 4.95965 5.17516 5.43119 5.50034 5.56009 5.57560 5.60759 5.69513 5.91707 6.05649 6.08392 6.33978 6.40604 6.53836 6.76854 6.90848 7.51760 7.66820 7.99491 8.23600 8.39486 8.54073 9.51975 10.07305 10.43786 11.44774 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.005249 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.116788 B = 5332.952271 C = 6831.631908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.116 3.884 15 N -0.687 5.687 16 C 0.561 3.439 17 O -0.536 6.536 18 C 0.055 3.945 19 N -0.421 5.421 20 C 0.090 3.910 21 C -0.125 4.125 22 C -0.122 4.122 23 C 0.105 3.895 24 F -0.107 7.107 25 H 0.254 0.746 26 H 0.389 0.611 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.364 0.636 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.420 0.580 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -9.272 11.305 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.008 4.008 15 N -0.338 5.338 16 C 0.344 3.656 17 O -0.414 6.414 18 C -0.085 4.085 19 N -0.131 5.131 20 C -0.071 4.071 21 C -0.145 4.145 22 C -0.148 4.148 23 C 0.082 3.918 24 F -0.085 7.085 25 H 0.064 0.936 26 H 0.223 0.777 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.208 0.792 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.259 0.741 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.216 -9.257 10.980 14.363 hybrid contribution -0.062 0.632 0.020 0.635 sum 0.153 -8.625 11.000 13.979 Atomic orbital electron populations 1.69695 1.05088 1.25501 1.56919 1.24739 0.95428 0.97609 1.02667 0.86155 0.78737 0.84297 0.77142 1.20615 1.21976 1.21881 1.19250 0.90915 0.84025 1.43495 0.91142 1.42368 1.06069 0.99027 1.87927 1.20591 0.95051 0.87005 0.91925 0.91564 1.23032 0.86513 0.97273 0.95328 1.86574 1.32180 1.91870 1.25710 1.21645 0.99718 0.97094 0.82345 1.45832 1.48696 1.21859 1.17407 1.17647 0.79774 0.84627 0.83530 1.90815 1.57224 1.22133 1.71185 1.21562 0.98566 0.91605 0.96730 1.67749 1.19589 1.11998 1.13800 1.22986 0.94648 1.00299 0.89124 1.22303 0.97053 0.93575 1.01584 1.21677 1.01001 0.97925 0.94238 1.18681 0.96901 0.82979 0.93254 1.91616 1.88496 1.40970 1.87440 0.93556 0.77654 0.93263 0.95500 0.79175 0.91824 0.90294 0.74113 0.81153 0.83295 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -17.39 4.51 -53.43 -0.24 -17.63 16 10 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 11 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 12 C 0.06 1.06 6.86 37.16 0.25 1.31 16 13 O -0.56 -10.18 12.64 -35.23 -0.45 -10.62 16 14 C 0.12 2.18 5.12 -4.05 -0.02 2.15 16 15 N -0.69 -13.04 5.38 -61.21 -0.33 -13.37 16 16 C 0.56 10.75 7.81 -12.26 -0.10 10.66 16 17 O -0.54 -11.44 15.32 5.34 0.08 -11.36 16 18 C 0.05 0.91 6.75 -82.96 -0.56 0.35 16 19 N -0.42 -6.44 9.54 -9.76 -0.09 -6.54 16 20 C 0.09 0.99 11.18 -17.56 -0.20 0.80 16 21 C -0.13 -1.06 10.11 -39.34 -0.40 -1.46 16 22 C -0.12 -1.22 10.16 -39.24 -0.40 -1.61 16 23 C 0.10 1.50 7.32 -38.82 -0.28 1.22 16 24 F -0.11 -1.71 15.55 2.25 0.04 -1.68 16 25 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.39 10.60 7.80 -40.82 -0.32 10.28 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.36 4.76 9.12 45.56 0.42 5.18 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.64 7.39 -51.92 -0.38 1.26 16 32 H 0.42 8.27 7.47 -40.82 -0.30 7.96 16 33 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -33.99 315.02 -5.77 -39.77 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -3.09 Total: 17.29 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -2.14 Total: 9.44 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 0.06 Total: -64.44 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.36 Total: -21.98 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.99 -5.77 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755641882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.868 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds