Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.52997 * 109.47207 * 269.99829 * 6 5 4 8 8 C 1.50697 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47268 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47156 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99872 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00264 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46904 * 90.00387 * 18 16 14 20 20 H 1.48497 * 109.46899 * 210.00079 * 18 16 14 21 21 H 1.48499 * 109.46980 * 330.00190 * 18 16 14 22 22 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 26 26 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 27 27 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 28 28 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 29 29 H 1.08994 * 109.47304 * 300.00241 * 7 6 5 30 30 H 1.09005 * 109.46716 * 60.00111 * 7 6 5 31 31 H 0.97008 * 119.99701 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47429 * 300.00095 * 11 10 8 33 33 H 1.09005 * 109.47224 * 60.00068 * 11 10 8 34 34 H 1.08993 * 109.46743 * 299.99957 * 12 11 10 35 35 H 1.09005 * 109.46815 * 59.99973 * 12 11 10 36 36 H 0.97001 * 119.99839 * 0.02562 * 13 12 11 37 37 H 0.96999 * 120.00234 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5073 -1.4589 8 6 5.7934 -3.6521 -1.4657 9 8 6.1887 -4.1183 -0.4182 10 7 6.2307 -4.1579 -2.6360 11 6 7.1829 -5.2711 -2.6427 12 6 7.5129 -5.6513 -4.0876 13 7 8.4657 -6.7642 -4.0943 14 6 8.9092 -7.2786 -5.2833 15 1 8.5569 -6.8637 -6.2161 16 6 9.8115 -8.3334 -5.2896 17 7 10.2404 -8.8394 -4.1528 18 14 10.4160 -9.0357 -6.9117 19 1 11.6401 -8.3117 -7.3390 20 1 10.7277 -10.4776 -6.7412 21 1 9.3606 -8.8762 -7.9441 22 7 2.2199 -1.1083 -0.0065 23 1 -0.3633 -0.0048 1.0277 24 1 -0.3633 -0.8876 -0.5180 25 1 -0.3633 0.8924 -0.5097 26 1 1.8392 2.1308 0.0006 27 1 5.3966 -1.8274 0.5003 28 1 4.0439 -2.9843 0.4958 29 1 3.9004 -2.8071 -1.9732 30 1 5.2530 -1.6501 -1.9688 31 1 5.9142 -3.7852 -3.4739 32 1 8.0958 -4.9715 -2.1279 33 1 6.7431 -6.1285 -2.1332 34 1 6.5999 -5.9511 -4.6019 35 1 7.9525 -4.7940 -4.5975 36 1 8.7818 -7.1370 -3.2565 37 1 10.8707 -9.5767 -4.1573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131372551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -19.985039 kcal Electronic energy + Delta-G solvation = -18457.390404 eV Core-core repulsion = 15360.350443 eV Total energy + Delta-G solvation = -3097.039960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.03921 -40.59732 -37.36841 -35.51755 -35.20003 -33.18204 -32.04459 -29.65690 -28.51496 -27.09669 -25.37455 -23.33990 -22.87301 -21.32398 -20.67089 -19.32353 -18.70176 -18.01399 -16.98469 -16.95986 -16.51041 -16.14881 -15.84099 -15.75409 -15.25747 -15.01288 -14.68508 -14.61289 -14.02738 -13.75818 -13.62336 -13.26311 -13.05504 -13.03919 -12.88042 -12.65958 -12.49617 -12.20933 -12.16499 -12.08248 -11.86561 -11.02588 -10.99158 -10.61973 -10.37376 -10.13340 -9.63139 -9.06701 -7.96952 -5.28437 -0.28171 0.41725 0.80285 1.48492 1.50963 1.59392 1.61292 1.75861 2.11997 2.57873 3.08065 3.37171 3.64950 3.93342 4.01635 4.06963 4.11820 4.23563 4.24975 4.30427 4.40981 4.54179 4.60618 4.76526 4.78401 4.85104 4.98353 5.03816 5.06439 5.14208 5.37205 5.39721 5.49289 6.23880 6.53902 6.79849 7.23353 7.30012 8.02171 8.24864 9.26659 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046871 B = 0.002172 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.245791 B =12889.902642 C =13000.071507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 C -0.261 4.261 4 S 0.149 5.851 5 C 0.039 3.961 6 C -0.026 4.026 7 C -0.119 4.119 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.711 5.711 11 C 0.127 3.873 12 C 0.148 3.852 13 N -0.748 5.748 14 C -0.248 4.248 15 H 0.083 0.917 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.266 1.266 22 N -0.499 5.499 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.204 0.796 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.418 0.582 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.374 0.626 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.086 24.910 6.570 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.400 4.400 4 S 0.404 5.596 5 C -0.238 4.238 6 C -0.068 4.068 7 C -0.160 4.160 8 C 0.300 3.700 9 O -0.466 6.466 10 N -0.364 5.364 11 C 0.002 3.998 12 C 0.021 3.979 13 N -0.391 5.391 14 C -0.379 4.379 15 H 0.101 0.899 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.808 3.192 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.190 1.190 22 N -0.215 5.215 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.221 0.779 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.255 0.745 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.205 0.795 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.079 24.606 7.115 31.351 hybrid contribution -0.288 -0.853 -0.576 1.069 sum -18.367 23.753 6.538 30.729 Atomic orbital electron populations 1.20441 0.85560 1.04106 1.03572 1.20776 0.99565 0.86483 1.02055 1.27217 0.94939 1.04919 1.12933 1.83960 1.07350 1.01206 1.67036 1.26979 0.93842 0.99323 1.03654 1.19906 0.95912 0.93750 0.97192 1.21579 0.99326 0.97021 0.98099 1.21116 0.81649 0.84315 0.82939 1.90717 1.59940 1.62848 1.33078 1.45757 1.45836 1.35299 1.09528 1.21143 0.92318 0.89060 0.97298 1.20862 0.92818 0.90560 0.93620 1.42443 1.52317 1.38692 1.05689 1.19653 1.19655 1.11633 0.86986 0.89875 1.25694 1.00957 1.00003 1.00454 1.69837 1.37010 1.28801 1.26454 0.85048 0.78347 0.76782 0.78987 1.21234 1.22349 1.19031 1.66158 1.05271 1.33169 1.16935 0.90078 0.91303 0.88516 0.77947 0.88579 0.89702 0.86774 0.85739 0.74468 0.92736 0.93036 0.94551 0.94331 0.79466 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.31 71.24 0.73 -0.11 16 2 C 0.04 0.70 6.74 41.52 0.28 0.98 16 3 C -0.26 -3.30 11.13 66.78 0.74 -2.56 16 4 S 0.15 2.05 23.18 -56.49 -1.31 0.74 16 5 C 0.04 0.73 6.64 88.52 0.59 1.32 16 6 C -0.03 -0.50 5.09 29.85 0.15 -0.35 16 7 C -0.12 -1.99 5.68 29.85 0.17 -1.82 16 8 C 0.51 13.15 7.83 87.66 0.69 13.83 16 9 O -0.59 -20.56 15.98 -3.04 -0.05 -20.61 16 10 N -0.71 -17.63 5.56 -463.05 -2.57 -20.20 16 11 C 0.13 4.28 5.79 86.38 0.50 4.78 16 12 C 0.15 5.59 6.37 86.38 0.55 6.14 16 13 N -0.75 -38.08 5.60 -343.44 -1.92 -40.01 16 14 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 16 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 17 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 18 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 N -0.50 -10.60 10.53 -179.40 -1.89 -12.49 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 0.57 8.12 -2.38 -0.02 0.55 16 26 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 27 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.08 1.94 8.10 -2.38 -0.02 1.92 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.42 7.37 8.47 -92.70 -0.79 6.59 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 37 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -73.93 335.65 -0.13 -74.06 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.41 Total: 25.19 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.71 Total: 5.29 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -6.10 Total: -132.46 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -73.93 -0.13 -74.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131372551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.072 kcal (2) G-P(sol) polarization free energy of solvation -73.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds