Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47355 * 239.99740 * 3 2 1 5 5 H 1.48504 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47158 * 119.99538 * 3 2 1 7 7 C 1.38945 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99762 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99356 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46877 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47306 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21498 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.48276 * 119.99666 * 179.97438 * 17 16 15 20 20 C 1.47490 * 128.70850 * 179.97438 * 19 17 16 21 21 N 1.30652 * 102.71779 * 180.02562 * 20 19 17 22 22 O 1.20843 * 109.61310 * 0.02562 * 21 20 19 23 23 N 1.20899 * 115.91218 * 359.69119 * 22 21 20 24 24 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99722 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.47181 * 60.00066 * 12 10 9 27 27 H 1.09001 * 109.46953 * 299.99448 * 12 10 9 28 28 H 1.00903 * 111.00181 * 303.95707 * 13 12 10 29 29 H 1.09001 * 109.46881 * 60.00316 * 14 13 12 30 30 H 1.08996 * 109.47393 * 299.99997 * 14 13 12 31 31 H 1.09001 * 109.47289 * 60.00085 * 15 14 13 32 32 H 1.09004 * 109.47261 * 300.00341 * 15 14 13 33 33 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 34 34 H 1.08000 * 128.64830 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 -0.0005 14 6 1.4981 -7.2708 -0.0005 15 6 2.5230 -8.4067 -0.0017 16 7 1.8247 -9.6946 -0.0023 17 6 2.5295 -10.8434 -0.0028 18 8 3.7440 -10.8109 -0.0023 19 6 1.8226 -12.1468 -0.0028 20 6 2.3946 -13.5063 -0.0038 21 7 1.3314 -14.2657 -0.0039 22 8 0.3397 -13.5751 -0.0036 23 7 0.5276 -12.3808 0.0025 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6175 -4.9204 -0.8902 27 1 0.6168 -4.9208 0.8897 28 1 2.8333 -5.9120 -0.7819 29 1 0.8730 -7.3451 -0.8903 30 1 0.8735 -7.3454 0.8896 31 1 3.1486 -8.3326 0.8879 32 1 3.1474 -8.3319 -0.8921 33 1 0.8550 -9.7204 -0.0023 34 1 3.4337 -13.8009 -0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135573748.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = 49.791847 kcal Electronic energy + Delta-G solvation = -20409.311046 eV Core-core repulsion = 16769.003624 eV Total energy + Delta-G solvation = -3640.307422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.41309 -40.15362 -38.37113 -36.51782 -35.32104 -34.97135 -34.48358 -33.79454 -31.27693 -29.78474 -26.95704 -25.64019 -24.55896 -23.83792 -22.29971 -21.30512 -19.52916 -19.37219 -19.01619 -18.07379 -17.90285 -16.49693 -16.37925 -15.97863 -15.48958 -15.36427 -14.71724 -14.53014 -14.08146 -14.03758 -13.56138 -13.35584 -13.17902 -12.55442 -12.42689 -12.01682 -11.85796 -11.62651 -11.53199 -11.52838 -11.26612 -11.03788 -10.91487 -10.46194 -10.24264 -9.60106 -9.53215 -8.56253 -8.19820 -8.00029 -6.44721 -3.85788 0.24112 0.83354 2.11885 2.46671 2.90527 2.99352 3.18446 3.24443 3.28802 3.42845 3.86053 4.06934 4.24381 4.28915 4.35203 4.72007 4.84698 4.86813 5.10790 5.21851 5.27001 5.62688 5.64075 5.76090 5.84832 5.89227 6.19819 6.81179 7.02447 7.45898 7.50565 7.52374 7.89671 8.02422 8.57301 9.14429 9.50127 10.01250 10.72816 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.062929 B = 0.002102 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.841861 B =13317.001052 C =13734.068582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.048 3.952 15 C 0.119 3.881 16 N -0.706 5.706 17 C 0.605 3.395 18 O -0.508 6.508 19 C -0.040 4.040 20 C 0.039 3.961 21 N -0.353 5.353 22 O 0.343 5.657 23 N -0.321 5.321 24 H 0.272 0.728 25 H 0.392 0.608 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.353 0.647 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -23.696 -0.932 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.359 5.359 17 C 0.387 3.613 18 O -0.381 6.381 19 C -0.206 4.206 20 C -0.147 4.147 21 N -0.076 5.076 22 O 0.117 5.883 23 N -0.041 5.041 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.173 0.827 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.762 -23.849 -0.246 23.916 hybrid contribution -0.208 1.129 -0.892 1.453 sum -1.971 -22.721 -1.137 22.834 Atomic orbital electron populations 1.69600 1.05946 1.28332 1.50397 1.25273 0.95656 0.99778 0.97226 0.85901 0.78755 0.80357 0.79113 1.19895 1.20972 1.19839 1.19662 0.93379 0.82199 1.47784 0.87914 1.41851 1.09210 1.04586 1.64222 1.19753 0.88389 0.84674 0.84752 1.90533 1.13706 1.87007 1.55431 1.21675 0.94187 0.90738 1.01432 1.59919 1.18893 0.99329 1.51666 1.22077 0.95424 0.89318 1.01390 1.21463 0.95128 0.79639 1.04191 1.45746 1.10993 1.05524 1.73592 1.16395 0.86156 0.80942 0.77836 1.90886 1.12061 1.86219 1.48945 1.26273 0.88891 0.98066 1.07391 1.27785 1.01660 0.86183 0.99053 1.75107 0.94826 1.21220 1.16434 1.85100 1.30305 1.09930 1.63005 1.75390 1.17798 0.98176 1.12741 0.91779 0.77432 0.93618 0.89380 0.82723 0.94661 0.90199 0.89338 0.90525 0.75666 0.75487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.12 7.82 -10.98 -0.09 10.03 16 11 O -0.58 -15.58 15.78 5.55 0.09 -15.50 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.66 -9.90 6.12 -115.06 -0.70 -10.60 16 14 C 0.05 0.50 5.80 -3.83 -0.02 0.48 16 15 C 0.12 1.18 5.93 -4.04 -0.02 1.16 16 16 N -0.71 -6.05 5.55 -61.11 -0.34 -6.38 16 17 C 0.61 5.98 7.85 -12.13 -0.10 5.88 16 18 O -0.51 -6.53 17.05 5.37 0.09 -6.44 16 19 C -0.04 -0.33 7.56 -80.07 -0.61 -0.94 16 20 C 0.04 0.26 12.63 -14.28 -0.18 0.08 16 21 N -0.35 -2.66 12.22 30.72 0.38 -2.28 16 22 O 0.34 2.62 11.65 27.26 0.32 2.94 16 23 N -0.32 -2.56 12.13 33.49 0.41 -2.15 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 25 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.41 2.73 8.33 -40.82 -0.34 2.39 16 34 H 0.23 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -32.47 315.69 -4.11 -36.58 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -3.46 Total: 11.21 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.28 Total: 9.58 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.40 Total: -58.98 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.50 Total: -18.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.47 -4.11 -36.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135573748.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.375 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds