Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47355 * 239.99740 * 3 2 1 5 5 H 1.48504 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47158 * 119.99538 * 3 2 1 7 7 C 1.38945 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99762 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99356 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46877 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47306 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21498 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.48276 * 119.99666 * 179.97438 * 17 16 15 20 20 C 1.47490 * 128.70850 * 179.97438 * 19 17 16 21 21 N 1.30652 * 102.71779 * 180.02562 * 20 19 17 22 22 O 1.20843 * 109.61310 * 0.02562 * 21 20 19 23 23 N 1.20899 * 115.91218 * 359.69119 * 22 21 20 24 24 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99722 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.47181 * 60.00066 * 12 10 9 27 27 H 1.09001 * 109.46953 * 299.99448 * 12 10 9 28 28 H 1.00903 * 111.00181 * 303.95707 * 13 12 10 29 29 H 1.09001 * 109.46881 * 60.00316 * 14 13 12 30 30 H 1.08996 * 109.47393 * 299.99997 * 14 13 12 31 31 H 1.09001 * 109.47289 * 60.00085 * 15 14 13 32 32 H 1.09004 * 109.47261 * 300.00341 * 15 14 13 33 33 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 34 34 H 1.08000 * 128.64830 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 -0.0005 14 6 1.4981 -7.2708 -0.0005 15 6 2.5230 -8.4067 -0.0017 16 7 1.8247 -9.6946 -0.0023 17 6 2.5295 -10.8434 -0.0028 18 8 3.7440 -10.8109 -0.0023 19 6 1.8226 -12.1468 -0.0028 20 6 2.3946 -13.5063 -0.0038 21 7 1.3314 -14.2657 -0.0039 22 8 0.3397 -13.5751 -0.0036 23 7 0.5276 -12.3808 0.0025 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6175 -4.9204 -0.8902 27 1 0.6168 -4.9208 0.8897 28 1 2.8333 -5.9120 -0.7819 29 1 0.8730 -7.3451 -0.8903 30 1 0.8735 -7.3454 0.8896 31 1 3.1486 -8.3326 0.8879 32 1 3.1474 -8.3319 -0.8921 33 1 0.8550 -9.7204 -0.0023 34 1 3.4337 -13.8009 -0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135573748.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = 21.941809 kcal Electronic energy + Delta-G solvation = -20410.518714 eV Core-core repulsion = 16769.003624 eV Total energy + Delta-G solvation = -3641.515090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.99970 -40.96305 -40.14820 -37.58480 -36.10235 -35.87806 -35.58164 -35.20822 -33.26729 -30.83889 -28.13582 -26.84676 -25.50736 -25.00502 -23.19229 -22.05457 -21.10328 -20.11873 -19.93792 -19.69424 -18.72727 -17.74357 -17.35305 -17.25855 -16.63549 -16.35021 -16.11807 -15.81835 -15.37767 -15.30127 -14.92307 -14.51278 -14.05001 -13.87437 -13.52197 -13.32827 -13.01953 -12.94383 -12.63294 -12.50880 -12.43151 -12.41933 -12.12317 -11.89108 -11.75961 -11.50088 -10.39855 -10.36344 -10.01606 -9.39846 -8.46548 -5.95235 -0.40912 0.28920 1.38843 1.40304 1.42724 1.53264 1.72459 2.05539 2.25579 2.31359 2.43238 2.78306 3.05131 3.20883 3.53905 3.66125 3.69882 3.86223 4.08224 4.31500 4.42623 4.44419 4.50257 4.60826 4.82587 4.88678 5.06072 5.41156 5.82360 6.05316 6.12138 6.32382 6.60178 6.75278 7.12761 7.30945 7.56473 8.11831 8.70429 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.062929 B = 0.002102 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.841861 B =13317.001052 C =13734.068582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.068 3.932 13 N -0.684 5.684 14 C 0.056 3.944 15 C 0.126 3.874 16 N -0.695 5.695 17 C 0.608 3.392 18 O -0.542 6.542 19 C -0.052 4.052 20 C 0.052 3.948 21 N -0.362 5.362 22 O 0.344 5.656 23 N -0.320 5.320 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.348 0.652 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.419 0.581 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 -24.462 -1.027 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.074 4.074 15 C 0.003 3.997 16 N -0.348 5.348 17 C 0.390 3.610 18 O -0.418 6.418 19 C -0.217 4.217 20 C -0.134 4.134 21 N -0.086 5.086 22 O 0.118 5.882 23 N -0.039 5.039 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.257 0.743 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.791 -24.624 -0.338 24.784 hybrid contribution 0.085 1.276 -0.859 1.541 sum -2.706 -23.348 -1.197 23.534 Atomic orbital electron populations 1.69657 1.06764 1.29374 1.50209 1.26031 0.96571 1.02404 0.96284 0.84996 0.77767 0.76694 0.78933 1.19702 1.19504 1.19793 1.19627 0.92722 0.84079 1.50033 0.90344 1.41924 1.09380 1.04687 1.64993 1.20926 0.88279 0.86272 0.82254 1.90502 1.15954 1.87979 1.56677 1.21527 0.93765 0.87539 1.03637 1.59878 1.19315 1.00634 1.51853 1.22076 0.95292 0.86961 1.03031 1.21260 0.94991 0.80195 1.03268 1.45609 1.11494 1.04804 1.72846 1.16525 0.85791 0.81563 0.77087 1.90871 1.13491 1.86759 1.50632 1.26082 0.89119 0.97919 1.08573 1.28240 1.02574 0.85195 0.97349 1.75128 0.95001 1.21330 1.17159 1.85102 1.30463 1.09719 1.62957 1.75372 1.17712 0.98459 1.12344 0.91279 0.76860 0.90915 0.87307 0.83335 0.92474 0.88849 0.90871 0.91034 0.74347 0.72928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.72 5.29 -306.98 -1.62 -30.34 16 10 C 0.44 20.06 7.82 87.66 0.69 20.75 16 11 O -0.62 -34.07 15.78 -3.06 -0.05 -34.11 16 12 C 0.07 2.11 6.17 85.56 0.53 2.64 16 13 N -0.68 -19.34 6.12 -517.95 -3.17 -22.52 16 14 C 0.06 1.02 5.80 86.30 0.50 1.52 16 15 C 0.13 2.36 5.93 86.38 0.51 2.87 16 16 N -0.70 -10.80 5.55 -465.55 -2.59 -13.39 16 17 C 0.61 11.35 7.85 86.91 0.68 12.04 16 18 O -0.54 -13.65 17.05 -3.71 -0.06 -13.71 16 19 C -0.05 -0.78 7.56 44.29 0.34 -0.44 16 20 C 0.05 0.60 12.63 87.31 1.10 1.70 16 21 N -0.36 -4.87 12.22 -61.42 -0.75 -5.62 16 22 O 0.34 4.76 11.65 140.85 1.64 6.40 16 23 N -0.32 -4.61 12.13 -52.07 -0.63 -5.24 16 24 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.35 10.45 8.43 -89.69 -0.76 9.69 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.42 4.68 8.33 -92.71 -0.77 3.90 16 34 H 0.25 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -70.46 315.69 -0.37 -70.83 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -1.07 Total: 28.94 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 5.63 Total: 22.84 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -8.48 Total: -125.75 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: 1.53 Total: -41.43 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.46 -0.37 -70.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135573748.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.772 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds