Wall clock time and date at job start Wed Apr 15 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99805 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46821 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47212 * 180.02562 * 13 12 11 15 15 C 1.36936 * 120.00267 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00044 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00507 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99693 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47295 * 89.99899 * 19 17 15 21 21 H 1.48500 * 109.46921 * 209.99610 * 19 17 15 22 22 H 1.48498 * 109.47114 * 329.99657 * 19 17 15 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 28 28 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 29 29 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 30 30 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 31 31 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 32 32 H 1.08997 * 109.47809 * 299.99342 * 12 11 9 33 33 H 1.08999 * 109.47559 * 60.00425 * 12 11 9 34 34 H 1.09000 * 109.47410 * 300.00092 * 13 12 11 35 35 H 1.08999 * 109.47050 * 60.00362 * 13 12 11 36 36 H 0.97005 * 119.99803 * 359.97438 * 14 13 12 37 37 H 0.96996 * 120.00353 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3810 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 6 0.0136 -6.8908 -4.0384 14 7 -0.5159 -8.2567 -4.0365 15 6 -0.7588 -8.8986 -5.2215 16 1 -0.5595 -8.3980 -6.1574 17 6 -1.2610 -10.1926 -5.2197 18 7 -1.5034 -10.8030 -4.0791 19 14 -1.5930 -11.0679 -6.8363 20 1 -0.3758 -11.8064 -7.2584 21 1 -2.7157 -12.0238 -6.6601 22 1 -1.9514 -10.0693 -7.8753 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 4.2059 1.8027 0.0057 27 1 2.3811 -3.1881 0.5260 28 1 0.7217 -2.5441 0.5181 29 1 0.8092 -2.3490 -1.9522 30 1 2.4686 -2.9931 -1.9444 31 1 0.9002 -4.5953 -3.4391 32 1 0.8897 -7.0701 -2.0783 33 1 -0.7701 -6.4274 -2.0863 34 1 -0.6834 -6.2320 -4.5564 35 1 0.9765 -6.8748 -4.5490 36 1 -0.6938 -8.7068 -3.1958 37 1 -1.8540 -11.7073 -4.0778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146302254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:08 Heat of formation + Delta-G solvation = 4.902385 kcal Electronic energy + Delta-G solvation = -18697.759678 eV Core-core repulsion = 15601.798918 eV Total energy + Delta-G solvation = -3095.960761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.31390 -39.57215 -35.83136 -34.58482 -33.86065 -31.54270 -31.05276 -28.57165 -27.23740 -25.31687 -24.03151 -23.04166 -21.48408 -20.25107 -19.15369 -18.45147 -17.39817 -17.00152 -16.09409 -15.69368 -15.51757 -15.06972 -14.57829 -14.48133 -13.90625 -13.81836 -13.30213 -13.22362 -13.05589 -12.90200 -12.74038 -12.66868 -12.33850 -11.80196 -11.43386 -11.13291 -11.12847 -10.84626 -10.82369 -10.14757 -10.01005 -9.93478 -9.76204 -9.53001 -9.03218 -9.01478 -8.85866 -7.01803 -5.81602 -3.12521 0.36175 1.02901 1.41730 2.44278 2.66731 3.22606 3.40943 3.46027 3.47906 3.89718 4.42788 4.57259 4.63545 4.70371 4.79777 4.95257 5.04022 5.27434 5.31144 5.34889 5.47992 5.51778 5.53432 5.71626 5.72988 5.75938 5.93641 6.00414 6.12515 6.45595 6.67565 6.71178 7.38212 7.56775 7.63856 8.26794 8.36047 9.47235 10.01845 10.36490 11.40954 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.044822 B = 0.002281 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.547147 B =12273.627503 C =12324.867274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.059 3.941 3 N -0.468 5.468 4 C 0.015 3.985 5 S 0.119 5.881 6 C -0.214 4.214 7 C -0.026 4.026 8 C -0.135 4.135 9 C 0.510 3.490 10 O -0.542 6.542 11 N -0.723 5.723 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.198 0.802 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.400 0.600 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.386 0.614 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.192 24.404 7.873 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 N -0.181 5.181 4 C -0.283 4.283 5 S 0.372 5.628 6 C -0.335 4.335 7 C -0.067 4.067 8 C -0.176 4.176 9 C 0.296 3.704 10 O -0.420 6.420 11 N -0.374 5.374 12 C -0.014 4.014 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.215 0.785 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.761 23.984 8.462 27.615 hybrid contribution -0.852 -0.326 -1.096 1.426 sum 9.909 23.658 7.366 26.686 Atomic orbital electron populations 1.20412 0.86938 1.03559 1.03148 1.20280 0.98356 0.86127 1.02483 1.66194 1.05067 1.31657 1.15213 1.28276 0.95248 1.00076 1.04675 1.84124 1.07212 1.03570 1.67853 1.25764 0.94942 1.00741 1.12076 1.19783 1.02661 0.88017 0.96193 1.21666 1.03294 0.94106 0.98538 1.20507 0.78087 0.87932 0.83903 1.90726 1.52220 1.67877 1.31135 1.45957 1.66223 1.16828 1.08429 1.21587 0.99372 0.81163 0.99243 1.20757 0.96930 0.88641 0.92029 1.42194 1.77836 1.10627 1.06840 1.19187 1.36362 0.96158 0.85852 0.91034 1.24787 1.01814 0.97231 0.97022 1.69662 1.50573 1.13628 1.23992 0.86144 0.77548 0.79441 0.82748 1.21611 1.21668 1.20699 0.90487 0.90323 0.90633 0.78505 0.89575 0.88603 0.88530 0.88762 0.76618 0.91279 0.91256 0.95811 0.95835 0.77999 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.06 36.01 0.36 -0.26 16 2 C 0.06 0.56 6.74 -84.22 -0.57 -0.01 16 3 N -0.47 -4.72 10.53 -11.90 -0.13 -4.85 16 4 C 0.02 0.12 12.23 51.58 0.63 0.75 16 5 S 0.12 0.88 23.22 -107.50 -2.50 -1.62 16 6 C -0.21 -1.90 5.84 -35.92 -0.21 -2.11 16 7 C -0.03 -0.24 4.72 -27.88 -0.13 -0.37 16 8 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 9 C 0.51 6.57 7.83 -10.99 -0.09 6.48 16 10 O -0.54 -9.21 15.98 5.55 0.09 -9.13 16 11 N -0.72 -9.24 5.56 -60.29 -0.33 -9.58 16 12 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 13 C 0.14 2.78 6.37 -4.04 -0.03 2.76 16 14 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 15 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.55 6.71 -51.92 -0.35 0.20 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.20 0.84 8.06 -52.48 -0.42 0.41 16 27 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.10 0.90 6.71 -51.93 -0.35 0.55 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.39 10.33 7.67 -40.82 -0.31 10.02 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -34.05 332.58 -8.07 -42.13 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.13 Total: 6.75 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.46 Total: 0.33 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.07 Total: -60.65 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.05 -8.07 -42.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146302254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds