Wall clock time and date at job start Wed Apr 15 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99805 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46821 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47212 * 180.02562 * 13 12 11 15 15 C 1.36936 * 120.00267 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00044 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00507 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99693 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47295 * 89.99899 * 19 17 15 21 21 H 1.48500 * 109.46921 * 209.99610 * 19 17 15 22 22 H 1.48498 * 109.47114 * 329.99657 * 19 17 15 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 28 28 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 29 29 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 30 30 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 31 31 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 32 32 H 1.08997 * 109.47809 * 299.99342 * 12 11 9 33 33 H 1.08999 * 109.47559 * 60.00425 * 12 11 9 34 34 H 1.09000 * 109.47410 * 300.00092 * 13 12 11 35 35 H 1.08999 * 109.47050 * 60.00362 * 13 12 11 36 36 H 0.97005 * 119.99803 * 359.97438 * 14 13 12 37 37 H 0.96996 * 120.00353 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3810 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 6 0.0136 -6.8908 -4.0384 14 7 -0.5159 -8.2567 -4.0365 15 6 -0.7588 -8.8986 -5.2215 16 1 -0.5595 -8.3980 -6.1574 17 6 -1.2610 -10.1926 -5.2197 18 7 -1.5034 -10.8030 -4.0791 19 14 -1.5930 -11.0679 -6.8363 20 1 -0.3758 -11.8064 -7.2584 21 1 -2.7157 -12.0238 -6.6601 22 1 -1.9514 -10.0693 -7.8753 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 4.2059 1.8027 0.0057 27 1 2.3811 -3.1881 0.5260 28 1 0.7217 -2.5441 0.5181 29 1 0.8092 -2.3490 -1.9522 30 1 2.4686 -2.9931 -1.9444 31 1 0.9002 -4.5953 -3.4391 32 1 0.8897 -7.0701 -2.0783 33 1 -0.7701 -6.4274 -2.0863 34 1 -0.6834 -6.2320 -4.5564 35 1 0.9765 -6.8748 -4.5490 36 1 -0.6938 -8.7068 -3.1958 37 1 -1.8540 -11.7073 -4.0778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146302254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:08 Heat of formation + Delta-G solvation = -19.937242 kcal Electronic energy + Delta-G solvation = -18698.836805 eV Core-core repulsion = 15601.798918 eV Total energy + Delta-G solvation = -3097.037888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05142 -40.57466 -37.36786 -35.53897 -35.31277 -33.18185 -31.98358 -29.82728 -28.33185 -26.10952 -25.47541 -24.18315 -23.00567 -21.33588 -19.78703 -19.32313 -19.06927 -18.07734 -16.99079 -16.96222 -16.51003 -16.37200 -15.81617 -15.63318 -15.26152 -15.00775 -14.64053 -14.47823 -14.22232 -13.55644 -13.46165 -13.42443 -13.12774 -13.03895 -12.98674 -12.66220 -12.49792 -12.39872 -12.08338 -11.86601 -11.79846 -11.01675 -10.99293 -10.59482 -10.19222 -10.12408 -9.64618 -9.06907 -7.97198 -5.28636 -0.24378 0.44564 0.81876 1.48571 1.50874 1.59315 1.63449 1.79736 2.14467 2.58145 3.35205 3.37077 3.62224 3.92996 4.00792 4.01928 4.12623 4.22446 4.26143 4.32769 4.38197 4.58624 4.63611 4.72072 4.76432 4.94182 5.03568 5.06304 5.07124 5.14149 5.37880 5.41692 5.49413 6.23733 6.55749 6.77570 7.25389 7.29903 8.02061 8.24630 9.26474 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.044822 B = 0.002281 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.547147 B =12273.627503 C =12324.867274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.048 3.952 3 N -0.500 5.500 4 C 0.019 3.981 5 S 0.143 5.857 6 C -0.228 4.228 7 C -0.022 4.022 8 C -0.122 4.122 9 C 0.510 3.490 10 O -0.587 6.587 11 N -0.712 5.712 12 C 0.127 3.873 13 C 0.148 3.852 14 N -0.748 5.748 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.979 3.021 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.266 1.266 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.228 0.772 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.418 0.582 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.374 0.626 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.226 26.184 6.442 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 N -0.215 5.215 4 C -0.278 4.278 5 S 0.397 5.603 6 C -0.349 4.349 7 C -0.062 4.062 8 C -0.162 4.162 9 C 0.298 3.702 10 O -0.467 6.467 11 N -0.365 5.365 12 C 0.002 3.998 13 C 0.022 3.978 14 N -0.392 5.392 15 C -0.379 4.379 16 H 0.101 0.899 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.190 1.190 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.244 0.756 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.828 25.834 6.987 29.259 hybrid contribution -1.092 -0.768 -0.607 1.467 sum 10.735 25.066 6.380 28.005 Atomic orbital electron populations 1.20457 0.86312 1.03636 1.03731 1.20532 0.99102 0.86280 1.02414 1.66248 1.06171 1.32179 1.16879 1.28841 0.95082 1.01152 1.02731 1.84038 1.05862 1.03180 1.67232 1.25703 0.95959 1.00230 1.13023 1.19667 1.02092 0.88156 0.96281 1.21646 1.04620 0.91090 0.98841 1.21251 0.76926 0.89154 0.82883 1.90715 1.54048 1.69217 1.32742 1.45782 1.65823 1.15260 1.09639 1.21130 0.98339 0.83081 0.97260 1.20860 0.97252 0.86040 0.93685 1.42445 1.78220 1.12791 1.05698 1.19648 1.34863 0.96380 0.87039 0.89894 1.25682 1.02608 0.98362 1.00373 1.69831 1.52287 1.13737 1.26269 0.85057 0.76974 0.78185 0.79009 1.21276 1.22328 1.19012 0.89605 0.89999 0.90806 0.75616 0.90649 0.89382 0.86224 0.86554 0.74511 0.92984 0.92915 0.94463 0.94490 0.79476 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.06 71.24 0.72 -0.46 16 2 C 0.05 0.85 6.74 41.52 0.28 1.13 16 3 N -0.50 -9.34 10.53 -191.55 -2.02 -11.36 16 4 C 0.02 0.25 12.23 130.65 1.60 1.85 16 5 S 0.14 1.82 23.22 -56.49 -1.31 0.51 16 6 C -0.23 -3.69 5.84 24.64 0.14 -3.55 16 7 C -0.02 -0.37 4.72 29.85 0.14 -0.23 16 8 C -0.12 -1.83 5.68 29.85 0.17 -1.66 16 9 C 0.51 12.50 7.83 87.66 0.69 13.19 16 10 O -0.59 -20.01 15.98 -3.05 -0.05 -20.06 16 11 N -0.71 -17.04 5.56 -463.06 -2.57 -19.61 16 12 C 0.13 4.21 5.79 86.38 0.50 4.71 16 13 C 0.15 5.53 6.37 86.38 0.55 6.08 16 14 N -0.75 -37.79 5.60 -343.46 -1.92 -39.71 16 15 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 18 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 19 Si 0.98 45.50 29.55 68.60 2.03 47.52 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.08 6.71 -2.38 -0.02 1.07 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 27 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 28 H 0.09 1.63 6.71 -2.39 -0.02 1.61 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.42 7.04 8.47 -92.71 -0.79 6.26 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.37 20.45 7.67 -92.70 -0.71 19.74 16 37 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -73.51 332.58 0.13 -73.38 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.40 Total: 24.54 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.09 Total: 4.27 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -6.23 Total: -130.17 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.31 Total: 0.51 kcal Total: -73.51 0.13 -73.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146302254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.441 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds