Wall clock time and date at job start Wed Apr 15 2020 11:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46890 * 239.99743 * 3 2 1 5 5 H 1.48494 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47052 * 120.00150 * 3 2 1 7 7 C 1.38811 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00787 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00581 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47272 * 180.02562 * 12 11 10 14 14 C 1.34782 * 120.00384 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99390 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00183 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47298 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47298 * 179.97438 * 17 16 14 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 0.97005 * 119.99887 * 0.02562 * 1 2 3 24 24 H 0.97007 * 119.99532 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47518 * 59.99526 * 10 9 7 26 26 H 1.09003 * 109.47312 * 299.99989 * 10 9 7 27 27 H 1.08990 * 109.47401 * 59.99737 * 11 10 9 28 28 H 1.08998 * 109.46876 * 299.99687 * 11 10 9 29 29 H 1.08995 * 109.47697 * 59.99332 * 12 11 10 30 30 H 1.09006 * 109.46502 * 299.99754 * 12 11 10 31 31 H 0.97002 * 119.99758 * 359.97438 * 13 12 11 32 32 H 1.08999 * 109.47519 * 60.00281 * 16 14 13 33 33 H 1.08998 * 109.47153 * 299.99900 * 16 14 13 34 34 H 1.09003 * 109.47062 * 59.99557 * 17 16 14 35 35 H 1.09006 * 109.46638 * 300.00196 * 17 16 14 36 36 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 37 37 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8286 -6.1448 -0.0005 13 7 0.8766 -7.2582 -0.0018 14 6 1.3258 -8.5290 -0.0020 15 8 2.5182 -8.7506 -0.0016 16 6 0.3465 -9.6743 -0.0027 17 6 1.1114 -10.9994 -0.0022 18 6 0.1321 -12.1448 -0.0022 19 7 -0.3432 -12.7100 -1.0602 20 6 -1.1961 -13.6987 -0.8817 21 6 -1.4461 -13.9904 0.3983 22 16 -0.5043 -12.8884 1.3998 23 1 -0.4850 0.8401 -0.0004 24 1 0.3554 -2.3881 0.0002 25 1 2.6846 -3.7146 0.8893 26 1 2.6846 -3.7146 -0.8905 27 1 0.4373 -4.7618 -0.8913 28 1 0.4367 -4.7622 0.8886 29 1 2.4547 -6.2025 0.8898 30 1 2.4558 -6.2025 -0.8902 31 1 -0.0771 -7.0809 -0.0024 32 1 -0.2799 -9.6164 -0.8929 33 1 -0.2805 -9.6169 0.8871 34 1 1.7375 -11.0572 0.8882 35 1 1.7387 -11.0571 -0.8918 36 1 -1.6520 -14.2325 -1.7024 37 1 -2.1085 -14.7650 0.7558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176436607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:24 Heat of formation + Delta-G solvation = 4.063861 kcal Electronic energy + Delta-G solvation = -18306.916218 eV Core-core repulsion = 15210.919096 eV Total energy + Delta-G solvation = -3095.997122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.18639 -39.65157 -36.13537 -34.40110 -34.18655 -32.01111 -30.29580 -29.40806 -26.75743 -25.05200 -23.54789 -22.38936 -21.23260 -20.35861 -20.15881 -18.42268 -17.32269 -16.81672 -16.10560 -16.05140 -15.81405 -15.06622 -14.91505 -14.51356 -14.21358 -13.98063 -13.36099 -13.27473 -13.14847 -12.86997 -12.48906 -12.35579 -11.90617 -11.64705 -11.50592 -10.96861 -10.91606 -10.80034 -10.62003 -10.15424 -10.04483 -9.94791 -9.80298 -9.70096 -9.28009 -9.08665 -8.88044 -6.94250 -5.77652 -3.06639 0.28838 0.95583 1.35112 2.42548 2.53208 3.08103 3.44527 3.48520 3.49835 3.78189 4.41833 4.58648 4.62823 4.70783 4.79644 4.91309 5.07130 5.12705 5.19635 5.29700 5.45751 5.56930 5.61674 5.65737 5.78094 5.97553 6.05312 6.18130 6.31203 6.42494 6.78034 6.82291 7.34383 7.41625 7.69243 8.12008 8.41369 9.52341 10.09429 10.44056 11.45280 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.001990 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.402273 B =14070.058368 C =14261.784254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.727 5.727 14 C 0.513 3.487 15 O -0.542 6.542 16 C -0.135 4.135 17 C -0.029 4.029 18 C 0.054 3.946 19 N -0.474 5.474 20 C 0.039 3.961 21 C -0.264 4.264 22 S 0.122 5.878 23 H 0.256 0.744 24 H 0.384 0.616 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.176 0.824 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -29.197 2.096 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.378 5.378 14 C 0.299 3.701 15 O -0.420 6.420 16 C -0.177 4.177 17 C -0.071 4.071 18 C -0.224 4.224 19 N -0.188 5.188 20 C -0.112 4.112 21 C -0.403 4.403 22 S 0.376 5.624 23 H 0.065 0.935 24 H 0.217 0.783 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.236 0.764 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.323 -28.888 2.648 29.199 hybrid contribution -0.935 0.471 -0.730 1.276 sum -4.258 -28.417 1.919 28.798 Atomic orbital electron populations 1.69651 1.05134 1.25806 1.57759 1.24760 0.95574 0.97781 1.02984 0.86230 0.78494 0.83354 0.77894 1.21225 1.21669 1.21225 1.19204 0.91085 0.84132 1.42774 0.91133 1.42328 1.05858 0.99984 1.89630 1.20521 0.93277 0.85195 0.98216 1.21944 0.99579 0.93344 1.02726 1.21375 0.91745 0.84573 1.02512 1.46087 1.10848 1.05803 1.75063 1.20443 0.89551 0.83973 0.76147 1.90723 1.16855 1.84811 1.49593 1.21638 0.98554 0.92223 1.05270 1.20002 0.93914 0.87010 1.06129 1.27165 1.02298 1.01998 0.90916 1.66307 1.11292 1.09589 1.31615 1.21857 0.97156 0.95747 0.96406 1.27123 1.09054 1.07479 0.96624 1.84147 1.38150 1.27269 1.12821 0.93453 0.78304 0.96055 0.96049 0.91279 0.91298 0.91294 0.91301 0.76423 0.88073 0.88561 0.88616 0.87728 0.80689 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.66 5.60 -59.92 -0.34 -18.99 16 10 C 0.16 3.10 6.26 -4.05 -0.03 3.07 16 11 C -0.14 -2.06 5.44 -26.73 -0.15 -2.21 16 12 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 13 N -0.73 -7.83 5.56 -60.30 -0.33 -8.17 16 14 C 0.51 5.83 7.83 -10.99 -0.09 5.74 16 15 O -0.54 -8.25 15.98 5.56 0.09 -8.16 16 16 C -0.14 -1.07 5.68 -27.89 -0.16 -1.22 16 17 C -0.03 -0.25 5.09 -27.89 -0.14 -0.39 16 18 C 0.05 0.47 6.64 -13.46 -0.09 0.38 16 19 N -0.47 -4.70 10.54 -11.86 -0.13 -4.83 16 20 C 0.04 0.30 11.35 -19.18 -0.22 0.08 16 21 C -0.26 -1.65 11.37 29.12 0.33 -1.32 16 22 S 0.12 0.84 23.18 -107.50 -2.49 -1.65 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 3.31 8.47 -40.82 -0.35 2.97 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -34.19 335.35 -8.52 -42.71 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.27 Total: 5.92 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.80 Total: -1.78 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.07 Total: -59.58 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.19 -8.52 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176436607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.776 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds