Wall clock time and date at job start Wed Apr 15 2020 11:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46890 * 239.99743 * 3 2 1 5 5 H 1.48494 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47052 * 120.00150 * 3 2 1 7 7 C 1.38811 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00787 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00581 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47272 * 180.02562 * 12 11 10 14 14 C 1.34782 * 120.00384 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99390 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00183 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47298 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47298 * 179.97438 * 17 16 14 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 0.97005 * 119.99887 * 0.02562 * 1 2 3 24 24 H 0.97007 * 119.99532 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47518 * 59.99526 * 10 9 7 26 26 H 1.09003 * 109.47312 * 299.99989 * 10 9 7 27 27 H 1.08990 * 109.47401 * 59.99737 * 11 10 9 28 28 H 1.08998 * 109.46876 * 299.99687 * 11 10 9 29 29 H 1.08995 * 109.47697 * 59.99332 * 12 11 10 30 30 H 1.09006 * 109.46502 * 299.99754 * 12 11 10 31 31 H 0.97002 * 119.99758 * 359.97438 * 13 12 11 32 32 H 1.08999 * 109.47519 * 60.00281 * 16 14 13 33 33 H 1.08998 * 109.47153 * 299.99900 * 16 14 13 34 34 H 1.09003 * 109.47062 * 59.99557 * 17 16 14 35 35 H 1.09006 * 109.46638 * 300.00196 * 17 16 14 36 36 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 37 37 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8286 -6.1448 -0.0005 13 7 0.8766 -7.2582 -0.0018 14 6 1.3258 -8.5290 -0.0020 15 8 2.5182 -8.7506 -0.0016 16 6 0.3465 -9.6743 -0.0027 17 6 1.1114 -10.9994 -0.0022 18 6 0.1321 -12.1448 -0.0022 19 7 -0.3432 -12.7100 -1.0602 20 6 -1.1961 -13.6987 -0.8817 21 6 -1.4461 -13.9904 0.3983 22 16 -0.5043 -12.8884 1.3998 23 1 -0.4850 0.8401 -0.0004 24 1 0.3554 -2.3881 0.0002 25 1 2.6846 -3.7146 0.8893 26 1 2.6846 -3.7146 -0.8905 27 1 0.4373 -4.7618 -0.8913 28 1 0.4367 -4.7622 0.8886 29 1 2.4547 -6.2025 0.8898 30 1 2.4558 -6.2025 -0.8902 31 1 -0.0771 -7.0809 -0.0024 32 1 -0.2799 -9.6164 -0.8929 33 1 -0.2805 -9.6169 0.8871 34 1 1.7375 -11.0572 0.8882 35 1 1.7387 -11.0571 -0.8918 36 1 -1.6520 -14.2325 -1.7024 37 1 -2.1085 -14.7650 0.7558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176436607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:22 Heat of formation + Delta-G solvation = -20.651378 kcal Electronic energy + Delta-G solvation = -18307.987951 eV Core-core repulsion = 15210.919096 eV Total energy + Delta-G solvation = -3097.068855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.93784 -40.43238 -37.54580 -35.92248 -34.91200 -33.73237 -31.50059 -30.48439 -27.71776 -26.44715 -24.65332 -23.70128 -22.56502 -21.27422 -20.82548 -19.19905 -18.98287 -17.89393 -17.17336 -17.01630 -16.48490 -16.39220 -16.10806 -15.56031 -15.28873 -15.06108 -14.94755 -14.66193 -14.14583 -13.76870 -13.51640 -13.30543 -13.13313 -12.78318 -12.58173 -12.42542 -12.40923 -12.15948 -12.09638 -12.02971 -11.79429 -10.98117 -10.93630 -10.60596 -10.36087 -10.08882 -9.82258 -9.01927 -7.96521 -5.25721 -0.25691 0.42869 0.82049 1.47862 1.50995 1.57173 1.63135 1.84738 2.19577 2.56652 3.18643 3.37085 3.70992 3.78339 3.98711 4.08028 4.12305 4.25760 4.31068 4.42308 4.48691 4.57090 4.58747 4.74215 4.75045 4.84421 4.90252 5.00425 5.24495 5.29700 5.32634 5.44896 5.48694 6.26172 6.55600 6.79453 7.24372 7.32549 8.07553 8.31289 9.26716 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.001990 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.402273 B =14070.058368 C =14261.784254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.513 3.487 15 O -0.584 6.584 16 C -0.123 4.123 17 C -0.026 4.026 18 C 0.034 3.966 19 N -0.504 5.504 20 C 0.018 3.982 21 C -0.253 4.253 22 S 0.147 5.853 23 H 0.252 0.748 24 H 0.376 0.624 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.193 0.807 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -30.285 2.667 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.370 5.370 14 C 0.301 3.699 15 O -0.465 6.465 16 C -0.164 4.164 17 C -0.068 4.068 18 C -0.243 4.243 19 N -0.219 5.219 20 C -0.132 4.132 21 C -0.392 4.392 22 S 0.400 5.600 23 H 0.061 0.939 24 H 0.208 0.792 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.210 0.790 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.947 -30.004 3.218 30.433 hybrid contribution -0.733 0.698 -0.886 1.346 sum -4.681 -29.306 2.331 29.769 Atomic orbital electron populations 1.69800 1.06542 1.26275 1.59255 1.25604 0.96509 1.01204 1.03516 0.85180 0.77211 0.78969 0.78208 1.20424 1.21938 1.20348 1.19617 0.91571 0.85453 1.41645 0.90733 1.42536 1.05734 1.01163 1.89561 1.20690 0.94145 0.84808 0.97948 1.21699 0.98453 0.92245 1.03251 1.21082 0.91769 0.84481 1.01895 1.45954 1.11318 1.05143 1.74610 1.21015 0.89501 0.84567 0.74865 1.90708 1.18866 1.85377 1.51507 1.21597 0.97688 0.90168 1.06959 1.19905 0.93934 0.87645 1.05277 1.27087 1.02924 1.02480 0.91770 1.66298 1.12216 1.10634 1.32761 1.22192 0.97447 0.95871 0.97708 1.27512 1.08379 1.07291 0.96041 1.84037 1.37538 1.26822 1.11592 0.93882 0.79226 0.95973 0.96126 0.90847 0.90647 0.91848 0.92163 0.74674 0.87000 0.85988 0.88566 0.89641 0.78984 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -37.95 5.60 -343.47 -1.92 -39.87 16 10 C 0.15 5.92 6.26 86.38 0.54 6.46 16 11 C -0.12 -3.41 5.44 30.59 0.17 -3.24 16 12 C 0.13 3.36 5.67 86.38 0.49 3.85 16 13 N -0.72 -14.40 5.56 -463.07 -2.57 -16.97 16 14 C 0.51 11.15 7.83 87.65 0.69 11.84 16 15 O -0.58 -17.76 15.98 -3.03 -0.05 -17.81 16 16 C -0.12 -1.76 5.68 29.85 0.17 -1.59 16 17 C -0.03 -0.44 5.09 29.85 0.15 -0.29 16 18 C 0.03 0.57 6.64 88.52 0.59 1.15 16 19 N -0.50 -9.61 10.54 -191.45 -2.02 -11.63 16 20 C 0.02 0.25 11.35 83.66 0.95 1.20 16 21 C -0.25 -2.57 11.37 66.78 0.76 -1.81 16 22 S 0.15 1.73 23.18 -56.49 -1.31 0.42 16 23 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 24 H 0.38 19.93 7.67 -92.70 -0.71 19.22 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.42 5.94 8.47 -92.71 -0.79 5.15 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.09 1.73 8.10 -2.38 -0.02 1.71 16 36 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -73.18 335.35 -0.17 -73.35 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.41 Total: 22.72 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.81 Total: 0.33 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -6.23 Total: -127.20 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.31 Total: 0.42 kcal Total: -73.18 -0.17 -73.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176436607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.697 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds