Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47003 * 2 1 4 4 C 1.52991 * 109.47094 * 120.00235 * 2 1 3 5 5 C 1.52999 * 109.47380 * 174.13403 * 4 2 1 6 6 H 1.09001 * 109.47060 * 56.81162 * 5 4 2 7 7 N 1.46904 * 109.46688 * 296.81251 * 5 4 2 8 8 C 1.50698 * 109.47518 * 176.81565 * 5 4 2 9 9 O 1.21279 * 120.00467 * 99.99617 * 8 5 4 10 10 N 1.34779 * 119.99796 * 279.99788 * 8 5 4 11 11 C 1.47078 * 120.88419 * 179.97438 * 10 8 5 12 12 C 1.53239 * 108.52236 * 231.16211 * 11 10 8 13 13 N 1.46891 * 109.34027 * 306.16929 * 12 11 10 14 14 C 1.46905 * 111.00030 * 187.25274 * 13 12 11 15 15 C 1.50696 * 109.46865 * 65.69847 * 14 13 12 16 16 H 1.08001 * 120.00393 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99708 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00270 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99807 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46713 * 59.99978 * 19 17 15 21 21 H 1.48500 * 109.46889 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47181 * 300.00331 * 19 17 15 23 23 C 1.46905 * 111.26858 * 63.10499 * 13 12 11 24 24 C 1.47081 * 120.87715 * 359.97438 * 10 8 5 25 25 H 1.08994 * 109.47259 * 175.13556 * 1 2 3 26 26 H 1.08998 * 109.46781 * 295.13921 * 1 2 3 27 27 H 1.09003 * 109.47150 * 55.13580 * 1 2 3 28 28 H 1.09004 * 109.46789 * 240.00398 * 2 1 3 29 29 H 1.09002 * 109.47370 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47554 * 300.00058 * 3 2 1 31 31 H 1.08999 * 109.47227 * 60.00100 * 3 2 1 32 32 H 1.09005 * 109.47542 * 54.13004 * 4 2 1 33 33 H 1.09007 * 109.47341 * 294.13199 * 4 2 1 34 34 H 1.00899 * 111.00241 * 306.09451 * 7 5 4 35 35 H 1.00906 * 110.99920 * 70.04974 * 7 5 4 36 36 H 1.08999 * 109.62643 * 350.87463 * 11 10 8 37 37 H 1.08997 * 109.62888 * 111.45219 * 11 10 8 38 38 H 1.08999 * 109.48822 * 66.13183 * 12 11 10 39 39 H 1.09001 * 109.49256 * 186.20845 * 12 11 10 40 40 H 1.08996 * 109.47042 * 185.69685 * 14 13 12 41 41 H 1.09002 * 109.46661 * 305.70090 * 14 13 12 42 42 H 0.96993 * 120.00219 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.48959 * 176.93228 * 23 13 12 44 44 H 1.08993 * 109.49330 * 56.85741 * 23 13 12 45 45 H 1.09008 * 109.62774 * 248.54441 * 24 10 8 46 46 H 1.08997 * 109.63565 * 9.12845 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5629 -0.8502 1.1777 6 1 4.0065 0.1392 1.0667 7 7 3.9301 -1.6837 0.0250 8 6 4.0729 -1.4903 2.4431 9 8 4.3493 -2.6711 2.4566 10 7 4.2217 -0.7505 3.5598 11 6 4.7173 -1.3553 4.8055 12 6 3.7525 -0.9934 5.9398 13 7 3.5782 0.4645 5.9836 14 6 2.7981 0.8663 7.1618 15 6 3.5792 0.5534 8.4119 16 1 4.5575 0.1018 8.3386 17 6 3.0450 0.8439 9.6494 18 7 1.8535 1.3934 9.7387 19 14 4.0130 0.4555 11.1991 20 1 5.2981 1.1995 11.1795 21 1 3.2240 0.8606 12.3901 22 1 4.2864 -1.0029 11.2596 23 6 2.9609 0.9647 4.7479 24 6 3.8928 0.6830 3.5650 25 1 -0.3633 -1.0239 -0.0871 26 1 -0.3633 0.4366 0.9303 27 1 -0.3633 0.5875 -0.8432 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.5934 -1.7141 1.3033 33 1 1.7650 -0.1504 2.1361 34 1 3.4517 -2.5716 0.0537 35 1 3.7468 -1.2020 -0.8425 36 1 4.7616 -2.4387 4.6942 37 1 5.7102 -0.9666 5.0315 38 1 2.7883 -1.4699 5.7629 39 1 4.1611 -1.3396 6.8892 40 1 2.5975 1.9367 7.1170 41 1 1.8549 0.3201 7.1765 42 1 1.4779 1.5980 10.6092 43 1 2.7954 2.0388 4.8330 44 1 2.0077 0.4611 4.5877 45 1 4.8065 1.2680 3.6715 46 1 3.3921 0.9473 2.6336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134824630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -40.194322 kcal Electronic energy + Delta-G solvation = -23623.903746 eV Core-core repulsion = 20354.900763 eV Total energy + Delta-G solvation = -3269.002983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29077 -37.90184 -37.08180 -34.39909 -33.56775 -32.40411 -30.89433 -28.73888 -27.85449 -27.50550 -25.65881 -24.40392 -22.92718 -21.98607 -20.46114 -20.17699 -18.53266 -17.66284 -16.41661 -15.91634 -15.79476 -15.26920 -14.97541 -14.69884 -14.46713 -14.27899 -14.19762 -13.93766 -13.59925 -13.57537 -13.04429 -12.72693 -12.44712 -12.38661 -12.19906 -11.98414 -11.87590 -11.33958 -11.22835 -11.17490 -11.00937 -10.94951 -10.84285 -10.75929 -10.61797 -10.53750 -9.89676 -9.62892 -9.29156 -8.84301 -8.50372 -8.40580 -7.35229 -6.07584 -4.09504 2.74707 3.09050 3.31423 3.35539 3.38475 4.31779 4.37981 4.40233 4.50984 4.54724 4.74724 4.80806 4.89272 5.10065 5.21549 5.27411 5.30193 5.33909 5.36654 5.43988 5.47355 5.55851 5.61169 5.65095 5.69757 5.80082 5.85561 5.93924 5.98622 6.00271 6.04191 6.17981 6.40161 6.52448 6.71728 6.86373 7.19476 7.23902 7.25281 7.59348 7.73026 7.98866 8.09869 8.34339 8.45771 8.97502 9.55217 11.03222 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003849 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.881110 B = 7273.055632 C = 7991.529812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.149 4.149 5 C 0.075 3.925 6 H 0.103 0.897 7 N -0.826 5.826 8 C 0.520 3.480 9 O -0.540 6.540 10 N -0.607 5.607 11 C 0.115 3.885 12 C 0.052 3.948 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.041 3.959 24 C 0.109 3.891 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.349 0.651 35 H 0.344 0.656 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.097 0.903 40 H 0.031 0.969 41 H -0.009 1.009 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.026 0.974 45 H 0.076 0.924 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -0.516 -19.915 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.211 4.211 4 C -0.189 4.189 5 C -0.040 4.040 6 H 0.121 0.879 7 N -0.358 5.358 8 C 0.307 3.693 9 O -0.416 6.416 10 N -0.341 5.341 11 C -0.007 4.007 12 C -0.077 4.077 13 N -0.260 5.260 14 C 0.070 3.930 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.089 4.089 24 C -0.014 4.014 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.115 0.885 40 H 0.049 0.951 41 H 0.008 0.992 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.094 0.906 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.403 -0.845 -19.433 19.456 hybrid contribution -1.505 -0.283 0.715 1.690 sum -1.102 -1.127 -18.718 18.785 Atomic orbital electron populations 1.21831 0.94744 1.01783 1.02149 1.21110 0.96240 0.96508 0.97508 1.21954 1.01151 0.95686 1.02352 1.22454 0.95078 1.01898 0.99424 1.21406 0.94227 0.97839 0.90496 0.87895 1.58492 1.66528 1.07362 1.03380 1.20425 0.77730 0.86766 0.84355 1.90648 1.50814 1.15831 1.84336 1.48199 1.65024 1.10111 1.10799 1.21840 0.97850 0.98802 0.82218 1.22338 0.97271 0.89537 0.98576 1.62083 1.51131 1.10448 1.02311 1.19718 0.91279 0.96039 0.86001 1.21106 1.03225 1.40657 0.89928 0.91823 1.24982 0.95019 0.95239 0.99234 1.69940 1.16173 1.42940 1.24733 0.86554 0.79914 0.78798 0.82121 1.20107 1.21355 1.20224 1.22381 0.94722 1.00775 0.91019 1.21972 0.99940 0.80796 0.98719 0.92759 0.92308 0.92520 0.91416 0.92398 0.92454 0.92065 0.91198 0.90391 0.83647 0.84205 0.89477 0.90961 0.95844 0.88497 0.95056 0.99152 0.92816 0.90068 0.95611 0.90594 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.69 2.78 -90.62 -0.25 -0.94 16 3 C -0.15 -1.04 8.97 37.16 0.33 -0.71 16 4 C -0.15 -1.41 3.95 -26.74 -0.11 -1.52 16 5 C 0.08 0.82 2.19 -68.86 -0.15 0.67 16 6 H 0.10 1.00 5.18 -51.93 -0.27 0.73 16 7 N -0.83 -8.44 8.75 -5.65 -0.05 -8.48 16 8 C 0.52 7.89 6.96 -10.99 -0.08 7.82 16 9 O -0.54 -10.05 15.85 5.56 0.09 -9.96 16 10 N -0.61 -9.20 3.01 -172.48 -0.52 -9.72 16 11 C 0.12 1.92 6.60 -3.60 -0.02 1.90 16 12 C 0.05 1.00 5.46 -3.71 -0.02 0.98 16 13 N -0.53 -10.94 4.62 -235.79 -1.09 -12.03 16 14 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 15 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 16 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.04 0.66 5.62 -3.72 -0.02 0.64 16 24 C 0.11 1.44 5.98 -3.62 -0.02 1.42 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 6.71 -51.93 -0.35 0.09 16 29 H 0.06 0.38 6.53 -51.93 -0.34 0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.81 6.90 -51.93 -0.36 0.46 16 34 H 0.35 3.67 8.73 -39.29 -0.34 3.33 16 35 H 0.34 2.58 7.65 -39.29 -0.30 2.28 16 36 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 46 H 0.08 0.82 4.82 -51.93 -0.25 0.57 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -31.39 353.83 -8.84 -40.22 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.91 Total: 2.20 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.41 Total: 1.64 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.92 Total: -55.72 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.39 -8.84 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134824630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.029 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds