Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46955 * 111.00198 * 2 1 4 4 C 1.53053 * 109.38198 * 183.17731 * 3 2 1 5 5 N 1.46958 * 109.36324 * 301.63268 * 4 3 2 6 6 C 1.46900 * 110.99674 * 183.16921 * 5 4 3 7 7 C 1.53008 * 109.47163 * 46.17496 * 6 5 4 8 8 C 1.52999 * 109.46926 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46687 * 299.99690 * 8 7 6 10 10 C 1.52996 * 109.47385 * 59.99524 * 8 7 6 11 11 N 1.46495 * 109.47103 * 180.02562 * 8 7 6 12 12 C 1.34774 * 120.00207 * 180.02562 * 11 8 7 13 13 O 1.21690 * 119.99772 * 359.97438 * 12 11 8 14 14 C 1.46373 * 120.00032 * 179.97438 * 12 11 8 15 15 H 1.08000 * 120.00227 * 353.93781 * 14 12 11 16 16 C 1.40050 * 119.99849 * 173.93712 * 14 12 11 17 17 N 1.30668 * 120.00286 * 6.15183 * 16 14 12 18 18 Si 1.86802 * 119.99966 * 186.15359 * 16 14 12 19 19 H 1.48500 * 109.47529 * 94.98587 * 18 16 14 20 20 H 1.48505 * 109.47251 * 214.98572 * 18 16 14 21 21 H 1.48505 * 109.47288 * 334.97909 * 18 16 14 22 22 C 1.46950 * 110.90017 * 59.28376 * 5 4 3 23 23 C 1.46957 * 110.99846 * 123.79911 * 2 1 3 24 24 H 1.09001 * 109.47031 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47167 * 299.99983 * 1 2 3 27 27 H 1.09003 * 109.48482 * 303.15358 * 3 2 1 28 28 H 1.08997 * 109.48888 * 63.19807 * 3 2 1 29 29 H 1.09001 * 109.48817 * 61.57860 * 4 3 2 30 30 H 1.08997 * 109.48475 * 181.64144 * 4 3 2 31 31 H 1.08994 * 109.46898 * 166.17433 * 6 5 4 32 32 H 1.08994 * 109.46985 * 286.17825 * 6 5 4 33 33 H 1.08995 * 109.46705 * 300.00046 * 7 6 5 34 34 H 1.08994 * 109.46901 * 60.00278 * 7 6 5 35 35 H 1.09001 * 109.47019 * 60.00784 * 9 8 7 36 36 H 1.09008 * 109.46618 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47772 * 299.99772 * 9 8 7 38 38 H 1.09004 * 109.46870 * 60.00355 * 10 8 7 39 39 H 1.08999 * 109.47372 * 180.02562 * 10 8 7 40 40 H 1.08997 * 109.47338 * 300.00218 * 10 8 7 41 41 H 0.97003 * 119.99828 * 359.97438 * 11 8 7 42 42 H 0.97004 * 120.00392 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.48804 * 180.72051 * 22 5 4 44 44 H 1.09007 * 109.48701 * 60.66329 * 22 5 4 45 45 H 1.09001 * 109.49205 * 296.77686 * 23 2 1 46 46 H 1.09007 * 109.49377 * 56.82050 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3295 -0.0800 5 7 4.0501 0.5657 1.0598 6 6 5.5191 0.5657 1.0598 7 6 6.0291 1.9864 0.8092 8 6 7.5591 1.9862 0.8086 9 6 8.0695 1.4927 2.1639 10 6 8.0686 1.0590 -0.2966 11 7 8.0475 3.3465 0.5693 12 6 9.3725 3.5888 0.5257 13 8 10.1633 2.6778 0.6854 14 6 9.8605 4.9479 0.2860 15 1 9.1635 5.7376 0.0473 16 6 11.2311 5.2241 0.3664 17 7 12.0852 4.2498 0.5358 18 14 11.8384 6.9855 0.2315 19 1 12.0039 7.5578 1.5918 20 1 13.1437 7.0063 -0.4764 21 1 10.8504 7.7929 -0.5285 22 6 3.5234 -0.8061 1.0598 23 6 1.9956 -0.7632 1.1401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6014 1.9128 -0.8603 28 1 1.6935 1.8775 0.9171 29 1 3.8257 0.8485 -1.0104 30 1 3.9175 2.3453 -0.0508 31 1 5.8824 0.2143 2.0254 32 1 5.8824 -0.0948 0.2726 33 1 5.6658 2.3378 -0.1564 34 1 5.6659 2.6469 1.5965 35 1 7.7062 0.4806 2.3424 36 1 9.1596 1.4930 2.1636 37 1 7.7067 2.1532 2.9514 38 1 7.7050 1.4106 -1.2622 39 1 9.1586 1.0585 -0.2968 40 1 7.7053 0.0470 -0.1181 41 1 7.4172 4.0726 0.4416 42 1 13.0345 4.4412 0.5919 43 1 3.9178 -1.3470 1.9201 44 1 3.8253 -1.3116 0.1425 45 1 1.6938 -0.2821 2.0704 46 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331070103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -29.035508 kcal Electronic energy + Delta-G solvation = -23222.521123 eV Core-core repulsion = 19954.002023 eV Total energy + Delta-G solvation = -3268.519100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63865 -38.29728 -36.20604 -34.59081 -32.40374 -31.24761 -30.85962 -29.24483 -27.02483 -26.54189 -26.03310 -24.49161 -23.60047 -22.38855 -20.21678 -19.69282 -18.19635 -17.19500 -16.50958 -15.43252 -15.28632 -15.16361 -15.05987 -14.89896 -14.76270 -14.01341 -13.84941 -13.72940 -13.10358 -12.75850 -12.64645 -12.38574 -12.37007 -12.19161 -11.93064 -11.68019 -11.44927 -11.39320 -11.11022 -11.04338 -10.91625 -10.77998 -10.74414 -10.60457 -10.41014 -10.19601 -10.14807 -10.01564 -8.81032 -8.64375 -8.31842 -7.41398 -7.41171 -6.14394 -4.59101 3.15388 3.22854 3.25996 3.67457 3.80714 4.13418 4.62179 4.66380 4.73071 4.80647 4.95589 5.10336 5.13175 5.22390 5.29692 5.32045 5.32490 5.42948 5.55029 5.55761 5.59266 5.66390 5.73197 5.74372 5.87160 5.90382 5.93342 6.00777 6.22772 6.31067 6.36418 6.52205 6.60569 6.71356 6.74056 6.74238 7.01641 7.04109 7.21809 7.24304 7.47452 7.98437 8.21964 8.39762 9.06988 9.62682 10.64423 10.85225 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.037051 B = 0.003102 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.540427 B = 9024.543421 C = 9510.565462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.050 3.950 5 N -0.541 5.541 6 C 0.058 3.942 7 C -0.120 4.120 8 C 0.187 3.813 9 C -0.158 4.158 10 C -0.159 4.159 11 N -0.760 5.760 12 C 0.560 3.440 13 O -0.574 6.574 14 C -0.548 4.548 15 H 0.065 0.935 16 C 0.089 3.911 17 N -0.768 5.768 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.266 1.266 22 C 0.056 3.944 23 C 0.058 3.942 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.377 0.623 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.859 -7.301 0.252 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.078 4.078 5 N -0.266 5.266 6 C -0.070 4.070 7 C -0.159 4.159 8 C 0.099 3.901 9 C -0.216 4.216 10 C -0.217 4.217 11 N -0.415 5.415 12 C 0.364 3.636 13 O -0.457 6.457 14 C -0.585 4.585 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.397 5.397 18 Si 0.729 3.271 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.072 4.072 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.209 0.791 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.071 -8.044 0.387 20.702 hybrid contribution -0.104 1.262 -0.120 1.272 sum -19.175 -6.782 0.267 20.341 Atomic orbital electron populations 1.22338 0.87331 1.01939 1.00662 1.62161 1.07700 1.14338 1.42997 1.22201 0.95017 0.88981 1.00946 1.22279 0.93675 0.99571 0.92287 1.62236 1.08360 1.13333 1.42643 1.22248 0.85574 0.97427 1.01721 1.21944 0.95570 0.96408 1.01930 1.19787 0.90468 0.85305 0.94543 1.22253 1.04549 0.98682 0.96141 1.22258 1.04641 0.97283 0.97502 1.46230 1.08452 1.06688 1.80110 1.18088 0.79121 0.89878 0.76498 1.90520 1.54461 1.46235 1.54530 1.20913 0.92443 0.93903 1.51248 0.91644 1.25670 0.96698 0.97905 0.92761 1.70018 1.02364 1.31984 1.35324 0.86417 0.78538 0.83364 0.78749 1.19885 1.20542 1.18976 1.22138 0.94030 0.89924 1.01133 1.22162 0.94801 0.98206 0.91881 0.91379 0.91481 0.95649 0.90417 0.93991 0.94018 0.89328 0.90118 0.94152 0.91732 0.91112 0.93786 0.89787 0.93712 0.93937 0.89715 0.93838 0.79131 0.92248 0.90277 0.94022 0.94016 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.77 16 2 N -0.55 -5.39 4.97 -242.75 -1.21 -6.59 16 3 C 0.06 0.57 5.62 -3.77 -0.02 0.54 16 4 C 0.05 0.56 4.93 -3.76 -0.02 0.55 16 5 N -0.54 -6.45 4.86 -234.47 -1.14 -7.59 16 6 C 0.06 0.75 4.57 -3.82 -0.02 0.73 16 7 C -0.12 -1.75 3.65 -26.73 -0.10 -1.85 16 8 C 0.19 3.49 0.83 -131.82 -0.11 3.38 16 9 C -0.16 -3.03 8.05 37.16 0.30 -2.74 16 10 C -0.16 -3.04 8.05 37.16 0.30 -2.75 16 11 N -0.76 -16.71 5.10 -49.00 -0.25 -16.96 16 12 C 0.56 15.48 7.16 -12.99 -0.09 15.39 16 13 O -0.57 -17.62 11.25 5.20 0.06 -17.56 16 14 C -0.55 -15.38 9.53 -35.63 -0.34 -15.72 16 15 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 16 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 17 N -0.77 -22.85 11.85 55.55 0.66 -22.19 16 18 Si 0.90 20.21 29.56 -169.99 -5.03 15.19 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.06 0.59 5.58 -3.77 -0.02 0.57 16 23 C 0.06 0.54 5.62 -3.77 -0.02 0.52 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.99 6.00 -51.93 -0.31 0.68 16 31 H 0.08 1.06 6.43 -51.93 -0.33 0.73 16 32 H 0.04 0.54 6.36 -51.93 -0.33 0.21 16 33 H 0.06 0.91 6.26 -51.93 -0.33 0.58 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 36 H 0.08 1.98 6.16 -51.92 -0.32 1.66 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.99 6.16 -51.93 -0.32 1.67 16 40 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 41 H 0.38 7.45 8.45 -40.82 -0.35 7.10 16 42 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -32.34 348.25 -9.31 -41.65 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.99 Total: 7.02 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 0.34 Total: 1.78 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -1.94 Total: -53.33 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.06 Total: -17.56 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.34 -9.31 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331070103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.615 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds