Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46955 * 111.00198 * 2 1 4 4 C 1.53053 * 109.38198 * 183.17731 * 3 2 1 5 5 N 1.46958 * 109.36324 * 301.63268 * 4 3 2 6 6 C 1.46900 * 110.99674 * 183.16921 * 5 4 3 7 7 C 1.53008 * 109.47163 * 46.17496 * 6 5 4 8 8 C 1.52999 * 109.46926 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46687 * 299.99690 * 8 7 6 10 10 C 1.52996 * 109.47385 * 59.99524 * 8 7 6 11 11 N 1.46495 * 109.47103 * 180.02562 * 8 7 6 12 12 C 1.34774 * 120.00207 * 180.02562 * 11 8 7 13 13 O 1.21690 * 119.99772 * 359.97438 * 12 11 8 14 14 C 1.46373 * 120.00032 * 179.97438 * 12 11 8 15 15 H 1.08000 * 120.00227 * 353.93781 * 14 12 11 16 16 C 1.40050 * 119.99849 * 173.93712 * 14 12 11 17 17 N 1.30668 * 120.00286 * 6.15183 * 16 14 12 18 18 Si 1.86802 * 119.99966 * 186.15359 * 16 14 12 19 19 H 1.48500 * 109.47529 * 94.98587 * 18 16 14 20 20 H 1.48505 * 109.47251 * 214.98572 * 18 16 14 21 21 H 1.48505 * 109.47288 * 334.97909 * 18 16 14 22 22 C 1.46950 * 110.90017 * 59.28376 * 5 4 3 23 23 C 1.46957 * 110.99846 * 123.79911 * 2 1 3 24 24 H 1.09001 * 109.47031 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47167 * 299.99983 * 1 2 3 27 27 H 1.09003 * 109.48482 * 303.15358 * 3 2 1 28 28 H 1.08997 * 109.48888 * 63.19807 * 3 2 1 29 29 H 1.09001 * 109.48817 * 61.57860 * 4 3 2 30 30 H 1.08997 * 109.48475 * 181.64144 * 4 3 2 31 31 H 1.08994 * 109.46898 * 166.17433 * 6 5 4 32 32 H 1.08994 * 109.46985 * 286.17825 * 6 5 4 33 33 H 1.08995 * 109.46705 * 300.00046 * 7 6 5 34 34 H 1.08994 * 109.46901 * 60.00278 * 7 6 5 35 35 H 1.09001 * 109.47019 * 60.00784 * 9 8 7 36 36 H 1.09008 * 109.46618 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47772 * 299.99772 * 9 8 7 38 38 H 1.09004 * 109.46870 * 60.00355 * 10 8 7 39 39 H 1.08999 * 109.47372 * 180.02562 * 10 8 7 40 40 H 1.08997 * 109.47338 * 300.00218 * 10 8 7 41 41 H 0.97003 * 119.99828 * 359.97438 * 11 8 7 42 42 H 0.97004 * 120.00392 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.48804 * 180.72051 * 22 5 4 44 44 H 1.09007 * 109.48701 * 60.66329 * 22 5 4 45 45 H 1.09001 * 109.49205 * 296.77686 * 23 2 1 46 46 H 1.09007 * 109.49377 * 56.82050 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3295 -0.0800 5 7 4.0501 0.5657 1.0598 6 6 5.5191 0.5657 1.0598 7 6 6.0291 1.9864 0.8092 8 6 7.5591 1.9862 0.8086 9 6 8.0695 1.4927 2.1639 10 6 8.0686 1.0590 -0.2966 11 7 8.0475 3.3465 0.5693 12 6 9.3725 3.5888 0.5257 13 8 10.1633 2.6778 0.6854 14 6 9.8605 4.9479 0.2860 15 1 9.1635 5.7376 0.0473 16 6 11.2311 5.2241 0.3664 17 7 12.0852 4.2498 0.5358 18 14 11.8384 6.9855 0.2315 19 1 12.0039 7.5578 1.5918 20 1 13.1437 7.0063 -0.4764 21 1 10.8504 7.7929 -0.5285 22 6 3.5234 -0.8061 1.0598 23 6 1.9956 -0.7632 1.1401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6014 1.9128 -0.8603 28 1 1.6935 1.8775 0.9171 29 1 3.8257 0.8485 -1.0104 30 1 3.9175 2.3453 -0.0508 31 1 5.8824 0.2143 2.0254 32 1 5.8824 -0.0948 0.2726 33 1 5.6658 2.3378 -0.1564 34 1 5.6659 2.6469 1.5965 35 1 7.7062 0.4806 2.3424 36 1 9.1596 1.4930 2.1636 37 1 7.7067 2.1532 2.9514 38 1 7.7050 1.4106 -1.2622 39 1 9.1586 1.0585 -0.2968 40 1 7.7053 0.0470 -0.1181 41 1 7.4172 4.0726 0.4416 42 1 13.0345 4.4412 0.5919 43 1 3.9178 -1.3470 1.9201 44 1 3.8253 -1.3116 0.1425 45 1 1.6938 -0.2821 2.0704 46 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331070103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -54.287038 kcal Electronic energy + Delta-G solvation = -23223.616111 eV Core-core repulsion = 19954.002023 eV Total energy + Delta-G solvation = -3269.614089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68290 -39.83564 -37.60828 -35.95896 -34.49918 -32.66887 -31.95040 -30.41656 -28.13946 -28.13720 -28.01406 -25.39575 -24.43284 -23.59553 -21.76550 -20.69412 -19.85282 -19.08895 -17.61014 -17.31953 -16.34732 -16.17343 -16.01038 -15.93605 -15.80641 -15.56933 -15.11669 -15.02592 -14.57883 -14.36716 -14.13712 -13.66440 -13.44857 -13.23745 -13.19625 -12.98127 -12.84476 -12.70835 -12.55802 -12.49287 -12.26514 -12.21592 -12.10674 -11.98093 -11.85522 -11.70716 -11.57805 -11.36039 -10.88219 -9.55470 -9.39632 -9.33164 -9.21705 -8.22915 -6.78197 1.40353 1.41208 1.56277 2.26131 2.54429 2.82967 3.00132 3.17520 3.68723 3.87556 3.99451 4.03076 4.09876 4.12095 4.27004 4.32576 4.37666 4.45973 4.51447 4.56580 4.63298 4.64392 4.70733 4.81819 4.83957 4.88206 4.92525 4.98933 5.00057 5.02191 5.07972 5.09646 5.15681 5.16659 5.36070 5.57111 5.59335 5.94895 5.96635 5.98988 6.16533 6.18255 6.31866 6.46354 6.93188 7.67820 8.58361 8.77146 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.037051 B = 0.003102 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.540427 B = 9024.543421 C = 9510.565462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.060 3.940 4 C 0.049 3.951 5 N -0.544 5.544 6 C 0.065 3.935 7 C -0.103 4.103 8 C 0.181 3.819 9 C -0.150 4.150 10 C -0.150 4.150 11 N -0.751 5.751 12 C 0.546 3.454 13 O -0.613 6.613 14 C -0.579 4.579 15 H 0.081 0.919 16 C 0.031 3.969 17 N -0.821 5.821 18 Si 0.992 3.008 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.251 1.251 22 C 0.055 3.945 23 C 0.061 3.939 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.390 0.610 42 H 0.272 0.728 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.082 -6.618 0.178 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.068 4.068 4 C -0.079 4.079 5 N -0.269 5.269 6 C -0.063 4.063 7 C -0.141 4.141 8 C 0.094 3.906 9 C -0.208 4.208 10 C -0.208 4.208 11 N -0.405 5.405 12 C 0.350 3.650 13 O -0.499 6.499 14 C -0.616 4.616 15 H 0.099 0.901 16 C -0.183 4.183 17 N -0.451 5.451 18 Si 0.812 3.188 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.174 1.174 22 C -0.073 4.073 23 C -0.068 4.068 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.223 0.777 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.361 -7.366 0.311 22.597 hybrid contribution 0.510 0.959 -0.102 1.091 sum -20.851 -6.406 0.208 21.814 Atomic orbital electron populations 1.22379 0.85971 1.02765 1.01049 1.62189 1.09036 1.14125 1.43207 1.22160 0.94045 0.89382 1.01214 1.22298 0.94717 0.99260 0.91606 1.62254 1.07372 1.14378 1.42939 1.22117 0.86596 0.95919 1.01657 1.21754 0.91807 0.97879 1.02667 1.20017 0.93282 0.83300 0.93970 1.22140 1.01266 1.00804 0.96617 1.22136 1.01377 0.99328 0.97973 1.45981 1.07039 1.08680 1.78769 1.18365 0.80678 0.89697 0.76307 1.90504 1.56154 1.47235 1.56022 1.21454 0.93584 0.94693 1.51845 0.90103 1.26858 0.96642 1.03279 0.91560 1.70179 1.02992 1.35176 1.36721 0.85098 0.78087 0.76467 0.79176 1.18985 1.19913 1.17386 1.22213 0.94887 0.89022 1.01221 1.22161 0.93965 0.99037 0.91592 0.90743 0.90481 0.95484 0.89345 0.94430 0.94934 0.89388 0.89980 0.94382 0.90854 0.90671 0.90611 0.94638 0.93453 0.93635 0.94521 0.90861 0.77719 0.91819 0.89336 0.94678 0.94429 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.60 127.69 1.23 1.56 16 2 N -0.56 -9.78 4.97 -921.93 -4.58 -14.36 16 3 C 0.06 1.08 5.62 86.31 0.49 1.56 16 4 C 0.05 1.02 4.93 86.31 0.43 1.44 16 5 N -0.54 -11.80 4.86 -895.72 -4.35 -16.15 16 6 C 0.06 1.55 4.57 86.31 0.39 1.94 16 7 C -0.10 -2.81 3.65 30.60 0.11 -2.70 16 8 C 0.18 6.71 0.83 3.60 0.00 6.71 16 9 C -0.15 -5.78 8.05 71.98 0.58 -5.20 16 10 C -0.15 -5.79 8.05 71.98 0.58 -5.21 16 11 N -0.75 -33.23 5.10 -427.17 -2.18 -35.41 16 12 C 0.55 31.09 7.16 86.36 0.62 31.71 16 13 O -0.61 -39.45 11.25 -4.32 -0.05 -39.50 16 14 C -0.58 -32.93 9.53 24.83 0.24 -32.69 16 15 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 16 C 0.03 1.77 5.49 85.31 0.47 2.24 16 17 N -0.82 -50.38 11.85 21.84 0.26 -50.12 16 18 Si 0.99 41.55 29.56 68.60 2.03 43.58 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 C 0.05 1.03 5.58 86.31 0.48 1.51 16 23 C 0.06 1.00 5.62 86.31 0.49 1.48 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 26 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.79 6.00 -2.39 -0.01 1.78 16 31 H 0.08 1.95 6.43 -2.39 -0.02 1.94 16 32 H 0.04 0.93 6.36 -2.39 -0.02 0.92 16 33 H 0.07 1.90 6.26 -2.39 -0.01 1.89 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.38 6.43 -2.39 -0.02 2.36 16 36 H 0.03 1.72 6.16 -2.38 -0.01 1.70 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.78 6.16 -2.39 -0.01 1.76 16 40 H 0.07 2.33 6.43 -2.39 -0.02 2.32 16 41 H 0.39 15.14 8.45 -92.71 -0.78 14.36 16 42 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.09 1.23 8.13 -2.38 -0.02 1.21 16 Total: -1.00 -72.72 348.25 -2.60 -75.32 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.17 Total: 32.29 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.09 Total: 4.35 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -10.85 Total: -116.04 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.05 Total: -39.50 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -72.72 -2.60 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331070103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.037 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds