Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 C 1.53009 * 109.47104 * 175.09581 * 3 2 1 5 5 H 1.08996 * 109.62535 * 60.54679 * 4 3 2 6 6 C 1.53236 * 109.62506 * 300.16557 * 4 3 2 7 7 N 1.46901 * 109.33715 * 186.46276 * 6 4 3 8 8 C 1.46898 * 111.27267 * 63.10249 * 7 6 4 9 9 C 1.53242 * 109.33839 * 296.89812 * 8 7 6 10 10 N 1.47075 * 108.52259 * 53.82732 * 9 8 7 11 11 C 1.34771 * 120.88366 * 128.83758 * 10 9 8 12 12 O 1.21279 * 120.00423 * 185.24960 * 11 10 9 13 13 C 1.50707 * 119.99903 * 5.24899 * 11 10 9 14 14 H 1.08999 * 109.46881 * 39.99905 * 13 11 10 15 15 N 1.46899 * 109.47495 * 160.00145 * 13 11 10 16 16 C 1.53006 * 109.46896 * 280.00072 * 13 11 10 17 17 C 1.52997 * 109.47076 * 174.99934 * 16 13 11 18 18 C 1.50701 * 109.46985 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00098 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99850 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99646 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46950 * 89.99603 * 22 20 18 24 24 H 1.48495 * 109.47223 * 209.99935 * 22 20 18 25 25 H 1.48502 * 109.46923 * 330.00223 * 22 20 18 26 26 H 1.08998 * 109.47110 * 60.00198 * 1 2 3 27 27 H 1.09005 * 109.46935 * 299.99875 * 1 2 3 28 28 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47422 * 119.99748 * 2 1 3 30 30 H 1.09004 * 109.47408 * 239.99883 * 2 1 3 31 31 H 1.09000 * 109.47028 * 295.08881 * 3 2 1 32 32 H 1.08997 * 109.47552 * 55.09616 * 3 2 1 33 33 H 1.09003 * 109.49699 * 306.41654 * 6 4 3 34 34 H 1.08999 * 109.49882 * 66.47392 * 6 4 3 35 35 H 1.00906 * 110.99993 * 187.25477 * 7 6 4 36 36 H 1.08992 * 109.49322 * 56.85574 * 8 7 6 37 37 H 1.08999 * 109.49522 * 176.93876 * 8 7 6 38 38 H 1.09000 * 109.62888 * 173.54193 * 9 8 7 39 39 H 1.09008 * 109.62345 * 293.92447 * 9 8 7 40 40 H 1.00897 * 110.99477 * 296.04500 * 15 13 11 41 41 H 1.00896 * 110.99740 * 59.99549 * 15 13 11 42 42 H 1.09003 * 109.47030 * 294.99847 * 16 13 11 43 43 H 1.09003 * 109.46995 * 54.99528 * 16 13 11 44 44 H 1.09003 * 109.47120 * 299.99857 * 17 16 13 45 45 H 1.08999 * 109.47114 * 60.00139 * 17 16 13 46 46 H 0.97003 * 119.99924 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4443 0.1233 5 1 4.0014 0.9146 -0.7235 6 6 3.9767 0.7555 1.4288 7 7 5.4267 0.8964 1.6169 8 6 5.8109 2.3069 1.7613 9 6 5.4743 3.0592 0.4694 10 7 4.0569 2.8301 0.1510 11 6 3.2306 3.8626 -0.1089 12 8 2.0458 3.6642 -0.2757 13 6 3.7789 5.2640 -0.1923 14 1 4.7381 5.2485 -0.7097 15 7 2.8373 6.1150 -0.9319 16 6 3.9697 5.8218 1.2196 17 6 4.6416 7.1940 1.1393 18 6 4.8301 7.7431 2.5299 19 1 4.5031 7.1708 3.3854 20 6 5.4202 8.9762 2.7101 21 7 5.5843 9.4556 3.9237 22 14 5.9866 9.9658 1.2304 23 1 4.8795 10.8400 0.7664 24 1 7.1521 10.8032 1.6116 25 1 6.3782 9.0406 0.1367 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.7502 1.9303 -0.9307 32 1 1.6067 1.9811 0.8428 33 1 3.4546 1.2198 2.2654 34 1 3.7169 -0.3020 1.3798 35 1 5.7436 0.3527 2.4058 36 1 5.2633 2.7496 2.5932 37 1 6.8817 2.3744 1.9531 38 1 5.6503 4.1257 0.6103 39 1 6.0996 2.6892 -0.3432 40 1 2.7436 5.8050 -1.8875 41 1 1.9397 6.1456 -0.4721 42 1 2.9991 5.9204 1.7056 43 1 4.5977 5.1429 1.7966 44 1 5.6123 7.0954 0.6533 45 1 4.0136 7.8728 0.5622 46 1 5.9991 10.3233 4.0504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -34.159101 kcal Electronic energy + Delta-G solvation = -23819.494553 eV Core-core repulsion = 20550.753278 eV Total energy + Delta-G solvation = -3268.741276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69958 -37.87231 -35.95026 -34.82257 -33.75427 -32.76992 -31.16854 -30.50496 -27.90496 -26.66058 -25.51956 -23.94670 -22.71335 -21.41220 -20.89814 -20.19280 -18.77520 -17.24382 -16.73551 -16.16149 -16.04341 -15.62773 -15.32306 -15.10160 -14.50751 -14.30270 -14.14039 -14.04738 -13.59360 -13.25228 -13.00825 -12.70392 -12.59091 -12.34387 -12.26533 -11.87823 -11.70561 -11.54444 -11.48949 -11.17808 -10.94171 -10.86387 -10.81796 -10.60025 -10.04465 -9.86788 -9.69646 -9.35606 -9.12154 -8.96746 -8.50920 -8.45767 -8.23360 -6.01117 -3.98850 2.69326 2.95685 3.36546 3.43170 3.48379 3.95109 4.48738 4.49956 4.73719 4.77418 4.84722 4.95794 4.98107 5.05690 5.12235 5.18913 5.21011 5.33538 5.37262 5.40368 5.53863 5.60386 5.66462 5.68311 5.75136 5.77211 5.80394 5.89544 6.06196 6.24236 6.28662 6.34106 6.46125 6.59311 6.75590 6.84851 7.05439 7.26598 7.36442 7.46820 7.55406 7.66823 7.84729 8.25447 8.56088 9.03269 9.61945 11.12340 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.004306 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.381720 B = 6500.941671 C = 7134.983011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.106 4.106 4 C 0.149 3.851 5 H 0.074 0.926 6 C 0.045 3.955 7 N -0.690 5.690 8 C 0.041 3.959 9 C 0.104 3.896 10 N -0.609 5.609 11 C 0.486 3.514 12 O -0.544 6.544 13 C 0.072 3.928 14 H 0.096 0.904 15 N -0.810 5.810 16 C -0.089 4.089 17 C -0.004 4.004 18 C -0.521 4.521 19 H 0.068 0.932 20 C 0.066 3.934 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.264 1.264 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.345 0.655 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.335 0.665 41 H 0.349 0.651 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.012 0.988 45 H 0.030 0.970 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -19.646 -8.576 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.144 4.144 4 C 0.045 3.955 5 H 0.091 0.909 6 C -0.086 4.086 7 N -0.321 5.321 8 C -0.089 4.089 9 C -0.019 4.019 10 N -0.344 5.344 11 C 0.274 3.726 12 O -0.422 6.422 13 C -0.044 4.044 14 H 0.114 0.886 15 N -0.339 5.339 16 C -0.127 4.127 17 C -0.041 4.041 18 C -0.559 4.559 19 H 0.086 0.914 20 C -0.135 4.135 21 N -0.545 5.545 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.163 0.837 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.048 0.952 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.473 -18.982 -9.087 21.189 hybrid contribution -0.393 -0.198 0.270 0.516 sum -2.866 -19.180 -8.817 21.303 Atomic orbital electron populations 1.21700 0.95773 1.00983 1.02035 1.21752 0.96234 0.97743 1.01409 1.22133 0.92135 0.94919 1.05230 1.21374 0.95335 0.81667 0.97080 0.90852 1.22457 0.88101 1.00818 0.97182 1.60300 1.13820 1.10244 1.47781 1.22329 1.01523 0.88125 0.96957 1.21994 0.81051 1.01873 0.96985 1.48312 1.10335 1.05971 1.69733 1.22551 0.86723 0.88409 0.74945 1.90679 1.15991 1.84723 1.50829 1.21899 0.97147 0.85894 0.99433 0.88574 1.59045 1.16040 1.53199 1.05572 1.21519 1.01433 0.99464 0.90264 1.19482 0.95186 0.91875 0.97575 1.21164 1.39455 1.03347 0.91950 0.91395 1.25015 0.95379 0.97454 0.95632 1.69924 1.44666 1.19042 1.20915 0.86736 0.78385 0.80305 0.83583 1.20283 1.21706 1.18866 0.92757 0.92802 0.93154 0.92353 0.92402 0.89322 0.90930 0.94538 0.89724 0.83732 0.93950 0.89150 0.87931 0.90803 0.85355 0.83677 0.92297 0.92237 0.96940 0.95216 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.28 5.72 -26.73 -0.15 -1.43 16 3 C -0.11 -1.30 3.17 -26.73 -0.08 -1.39 16 4 C 0.15 1.75 3.18 -67.49 -0.21 1.54 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 6 C 0.04 0.46 5.44 -3.70 -0.02 0.44 16 7 N -0.69 -6.80 6.82 -113.51 -0.77 -7.57 16 8 C 0.04 0.44 6.70 -3.70 -0.02 0.41 16 9 C 0.10 1.22 5.93 -3.60 -0.02 1.20 16 10 N -0.61 -8.01 3.01 -164.92 -0.50 -8.50 16 11 C 0.49 7.40 6.86 -10.98 -0.08 7.33 16 12 O -0.54 -9.15 11.76 5.56 0.07 -9.08 16 13 C 0.07 1.14 2.29 -68.86 -0.16 0.98 16 14 H 0.10 1.43 7.14 -51.93 -0.37 1.06 16 15 N -0.81 -12.68 8.44 -5.65 -0.05 -12.73 16 16 C -0.09 -1.70 4.41 -26.73 -0.12 -1.81 16 17 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 18 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 19 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 22 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 32 H 0.07 1.07 7.16 -51.93 -0.37 0.69 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.73 6.70 -51.93 -0.35 0.39 16 35 H 0.34 2.77 8.90 -39.29 -0.35 2.42 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.29 4.63 -51.93 -0.24 1.05 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.33 4.53 9.06 -39.29 -0.36 4.17 16 41 H 0.35 5.58 8.58 -39.29 -0.34 5.24 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.09 6.52 -51.93 -0.34 0.76 16 44 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 45 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -31.53 348.37 -8.87 -40.40 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.93 Total: 9.37 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.04 Total: -7.16 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.54 Total: -55.99 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.53 -8.87 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.243 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds