Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46803 * 2 1 4 4 C 1.53001 * 109.46929 * 174.92925 * 3 2 1 5 5 H 1.08996 * 109.63247 * 297.76577 * 4 3 2 6 6 C 1.53245 * 109.62672 * 58.15176 * 4 3 2 7 7 N 1.46902 * 109.33987 * 173.53629 * 6 4 3 8 8 C 1.46898 * 111.26921 * 296.89598 * 7 6 4 9 9 C 1.53238 * 109.34104 * 63.10707 * 8 7 6 10 10 N 1.47075 * 109.63021 * 177.17855 * 4 3 2 11 11 C 1.34780 * 120.88137 * 9.12741 * 10 4 3 12 12 O 1.21283 * 119.99815 * 5.36011 * 11 10 4 13 13 C 1.50694 * 120.00336 * 185.35680 * 11 10 4 14 14 H 1.09005 * 109.47053 * 320.00441 * 13 11 10 15 15 N 1.46899 * 109.47487 * 200.00476 * 13 11 10 16 16 C 1.53004 * 109.47249 * 80.00224 * 13 11 10 17 17 C 1.52998 * 109.47238 * 185.00125 * 16 13 11 18 18 C 1.50700 * 109.47052 * 180.02562 * 17 16 13 19 19 H 1.07992 * 120.00092 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47260 * 90.00332 * 22 20 18 24 24 H 1.48502 * 109.46891 * 210.00245 * 22 20 18 25 25 H 1.48502 * 109.47465 * 329.99975 * 22 20 18 26 26 H 1.08998 * 109.47133 * 59.99970 * 1 2 3 27 27 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47172 * 299.99435 * 1 2 3 29 29 H 1.08998 * 109.47133 * 120.00030 * 2 1 3 30 30 H 1.08999 * 109.46926 * 240.00099 * 2 1 3 31 31 H 1.09003 * 109.47493 * 294.93247 * 3 2 1 32 32 H 1.08999 * 109.47009 * 54.93389 * 3 2 1 33 33 H 1.09003 * 109.49276 * 293.50288 * 6 4 3 34 34 H 1.09000 * 109.48988 * 53.55188 * 6 4 3 35 35 H 1.00904 * 110.99608 * 172.74756 * 7 6 4 36 36 H 1.09002 * 109.49149 * 183.06417 * 8 7 6 37 37 H 1.08999 * 109.49027 * 303.14579 * 8 7 6 38 38 H 1.09002 * 109.62838 * 65.87311 * 9 8 7 39 39 H 1.09000 * 109.62645 * 186.26758 * 9 8 7 40 40 H 1.00895 * 111.00238 * 176.04765 * 15 13 11 41 41 H 1.00907 * 110.99687 * 299.99989 * 15 13 11 42 42 H 1.09002 * 109.47057 * 305.00254 * 16 13 11 43 43 H 1.09006 * 109.46660 * 64.99983 * 16 13 11 44 44 H 1.09002 * 109.47202 * 300.00041 * 17 16 13 45 45 H 1.09001 * 109.47436 * 59.99825 * 17 16 13 46 46 H 0.97004 * 120.00174 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4444 0.1275 5 1 3.8533 0.9936 1.0769 6 6 4.1788 0.6477 -1.0285 7 7 5.6412 0.7820 -0.9890 8 6 6.0538 2.1773 -1.1909 9 6 5.5165 3.0367 -0.0416 10 7 4.0644 2.8260 0.0600 11 6 3.2142 3.8715 0.0908 12 8 2.0298 3.6847 0.2727 13 6 3.7354 5.2724 -0.1008 14 1 4.6831 5.3828 0.4263 15 7 2.7626 6.2342 0.4344 16 6 3.9476 5.5381 -1.5925 17 6 4.5929 6.9128 -1.7790 18 6 4.8013 7.1747 -3.2483 19 1 4.5037 6.4346 -3.9763 20 6 5.3729 8.3588 -3.6632 21 7 5.5543 8.5876 -4.9454 22 14 5.8883 9.6387 -2.4039 23 1 7.2942 9.3919 -1.9941 24 1 5.7775 10.9937 -3.0015 25 1 5.0030 9.5482 -1.2151 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.7526 1.9295 -0.9319 32 1 1.6044 1.9818 0.8411 33 1 3.9072 -0.4034 -0.9305 34 1 3.8032 1.0335 -1.9762 35 1 6.0785 0.1741 -1.6654 36 1 7.1421 2.2355 -1.2106 37 1 5.6523 2.5421 -2.1363 38 1 5.9955 2.7409 0.8918 39 1 5.7237 4.0878 -0.2426 40 1 3.1169 7.1772 0.3764 41 1 1.8749 6.1518 -0.0384 42 1 4.6002 4.7708 -2.0090 43 1 2.9863 5.5153 -2.1059 44 1 3.9402 7.6800 -1.3625 45 1 5.5541 6.9356 -1.2655 46 1 5.9561 9.4209 -5.2374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -35.197421 kcal Electronic energy + Delta-G solvation = -23855.415714 eV Core-core repulsion = 20586.629413 eV Total energy + Delta-G solvation = -3268.786301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57860 -37.76786 -36.03649 -34.90632 -33.67808 -32.82260 -31.13246 -30.34549 -27.90301 -26.69259 -25.42968 -24.09489 -22.75165 -21.39532 -20.83298 -20.31793 -18.65370 -17.41814 -16.79153 -16.12492 -15.96841 -15.47267 -15.06587 -14.73575 -14.45074 -14.37531 -14.22731 -13.98334 -13.49774 -13.29384 -13.11298 -12.70689 -12.65846 -12.54985 -12.27503 -11.87744 -11.74184 -11.57174 -11.39576 -11.17057 -11.14738 -10.95926 -10.77770 -10.56977 -10.22607 -10.06062 -9.91289 -9.34750 -8.95663 -8.83476 -8.65007 -8.38264 -8.25384 -6.14662 -4.14407 2.85221 2.97913 3.22528 3.31370 3.32461 3.99469 4.34955 4.51342 4.79922 4.83408 4.98417 5.00340 5.04908 5.10210 5.17952 5.18065 5.20726 5.26965 5.40154 5.46714 5.57533 5.60663 5.64193 5.71625 5.81015 5.82621 5.87257 5.94471 6.11322 6.13687 6.28793 6.35558 6.41407 6.61787 6.66407 6.81253 7.06134 7.09195 7.18013 7.32612 7.57813 7.64082 7.77248 8.40791 8.42650 8.88928 9.46580 10.98548 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.004386 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.115489 B = 6382.118929 C = 6917.059758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.114 4.114 4 C 0.154 3.846 5 H 0.074 0.926 6 C 0.044 3.956 7 N -0.690 5.690 8 C 0.040 3.960 9 C 0.108 3.892 10 N -0.614 5.614 11 C 0.529 3.471 12 O -0.529 6.529 13 C 0.068 3.932 14 H 0.095 0.905 15 N -0.830 5.830 16 C -0.128 4.128 17 C -0.010 4.010 18 C -0.524 4.524 19 H 0.070 0.930 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.344 0.656 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.350 0.650 41 H 0.347 0.653 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -16.072 10.417 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.152 4.152 4 C 0.051 3.949 5 H 0.092 0.908 6 C -0.086 4.086 7 N -0.321 5.321 8 C -0.090 4.090 9 C -0.015 4.015 10 N -0.349 5.349 11 C 0.318 3.682 12 O -0.405 6.405 13 C -0.047 4.047 14 H 0.113 0.887 15 N -0.362 5.362 16 C -0.168 4.168 17 C -0.047 4.047 18 C -0.561 4.561 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.101 -16.358 11.766 20.259 hybrid contribution 0.439 1.211 -1.607 2.060 sum -1.661 -15.146 10.159 18.313 Atomic orbital electron populations 1.21707 0.95791 1.00943 1.02094 1.21703 0.96211 0.97625 1.01315 1.22193 0.92366 0.95284 1.05332 1.21329 0.94601 0.80992 0.98023 0.90801 1.22464 0.87834 1.00549 0.97718 1.60303 1.07781 1.07646 1.56386 1.22344 1.00822 0.88353 0.97528 1.21912 0.79842 1.00895 0.98886 1.48161 1.06865 1.05709 1.74118 1.20730 0.86127 0.86483 0.74872 1.90637 1.16467 1.84880 1.48486 1.21586 0.96535 0.89675 0.96879 0.88697 1.58746 1.06155 1.08650 1.62620 1.22200 1.01692 1.00698 0.92214 1.19570 0.95168 0.91731 0.98253 1.21043 1.40925 1.03674 0.90502 0.91180 1.25038 0.95130 0.98077 0.95143 1.69910 1.44220 1.25536 1.14244 0.86768 0.79387 0.81021 0.82025 1.20222 1.21314 1.18959 0.92801 0.93204 0.92668 0.92319 0.92532 0.91499 0.88218 0.89700 0.94509 0.83767 0.89334 0.93871 0.90808 0.88524 0.83566 0.83906 0.92094 0.92152 0.96573 0.96849 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.31 5.39 -26.73 -0.14 -1.45 16 3 C -0.11 -1.46 3.21 -26.73 -0.09 -1.55 16 4 C 0.15 1.88 3.20 -67.49 -0.22 1.67 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.04 0.47 5.38 -3.70 -0.02 0.45 16 7 N -0.69 -6.93 6.82 -113.50 -0.77 -7.70 16 8 C 0.04 0.43 6.70 -3.70 -0.02 0.41 16 9 C 0.11 1.28 6.06 -3.60 -0.02 1.25 16 10 N -0.61 -8.38 3.01 -164.92 -0.50 -8.88 16 11 C 0.53 8.55 6.77 -10.99 -0.07 8.48 16 12 O -0.53 -9.54 11.95 5.55 0.07 -9.48 16 13 C 0.07 1.10 2.35 -68.87 -0.16 0.94 16 14 H 0.10 1.43 6.61 -51.93 -0.34 1.09 16 15 N -0.83 -13.45 8.94 -5.65 -0.05 -13.50 16 16 C -0.13 -2.40 4.53 -26.73 -0.12 -2.53 16 17 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 18 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 22 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 6.85 -51.93 -0.36 0.17 16 31 H 0.07 1.01 7.35 -51.93 -0.38 0.63 16 32 H 0.10 1.51 6.18 -51.93 -0.32 1.19 16 33 H 0.08 0.76 6.91 -51.93 -0.36 0.40 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.34 2.84 8.90 -39.29 -0.35 2.49 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.17 5.10 -51.93 -0.27 0.91 16 40 H 0.35 5.51 7.55 -39.29 -0.30 5.22 16 41 H 0.35 5.73 8.58 -39.29 -0.34 5.39 16 42 H 0.06 1.13 7.36 -51.93 -0.38 0.74 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.35 5.93 -51.93 -0.31 0.05 16 45 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -30.75 347.94 -8.85 -39.60 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.91 Total: 11.48 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.04 Total: -6.60 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.55 Total: -56.46 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.75 -8.85 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.399 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds