Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46803 * 2 1 4 4 C 1.53001 * 109.46929 * 174.92925 * 3 2 1 5 5 H 1.08996 * 109.63247 * 297.76577 * 4 3 2 6 6 C 1.53245 * 109.62672 * 58.15176 * 4 3 2 7 7 N 1.46902 * 109.33987 * 173.53629 * 6 4 3 8 8 C 1.46898 * 111.26921 * 296.89598 * 7 6 4 9 9 C 1.53238 * 109.34104 * 63.10707 * 8 7 6 10 10 N 1.47075 * 109.63021 * 177.17855 * 4 3 2 11 11 C 1.34780 * 120.88137 * 9.12741 * 10 4 3 12 12 O 1.21283 * 119.99815 * 5.36011 * 11 10 4 13 13 C 1.50694 * 120.00336 * 185.35680 * 11 10 4 14 14 H 1.09005 * 109.47053 * 320.00441 * 13 11 10 15 15 N 1.46899 * 109.47487 * 200.00476 * 13 11 10 16 16 C 1.53004 * 109.47249 * 80.00224 * 13 11 10 17 17 C 1.52998 * 109.47238 * 185.00125 * 16 13 11 18 18 C 1.50700 * 109.47052 * 180.02562 * 17 16 13 19 19 H 1.07992 * 120.00092 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47260 * 90.00332 * 22 20 18 24 24 H 1.48502 * 109.46891 * 210.00245 * 22 20 18 25 25 H 1.48502 * 109.47465 * 329.99975 * 22 20 18 26 26 H 1.08998 * 109.47133 * 59.99970 * 1 2 3 27 27 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47172 * 299.99435 * 1 2 3 29 29 H 1.08998 * 109.47133 * 120.00030 * 2 1 3 30 30 H 1.08999 * 109.46926 * 240.00099 * 2 1 3 31 31 H 1.09003 * 109.47493 * 294.93247 * 3 2 1 32 32 H 1.08999 * 109.47009 * 54.93389 * 3 2 1 33 33 H 1.09003 * 109.49276 * 293.50288 * 6 4 3 34 34 H 1.09000 * 109.48988 * 53.55188 * 6 4 3 35 35 H 1.00904 * 110.99608 * 172.74756 * 7 6 4 36 36 H 1.09002 * 109.49149 * 183.06417 * 8 7 6 37 37 H 1.08999 * 109.49027 * 303.14579 * 8 7 6 38 38 H 1.09002 * 109.62838 * 65.87311 * 9 8 7 39 39 H 1.09000 * 109.62645 * 186.26758 * 9 8 7 40 40 H 1.00895 * 111.00238 * 176.04765 * 15 13 11 41 41 H 1.00907 * 110.99687 * 299.99989 * 15 13 11 42 42 H 1.09002 * 109.47057 * 305.00254 * 16 13 11 43 43 H 1.09006 * 109.46660 * 64.99983 * 16 13 11 44 44 H 1.09002 * 109.47202 * 300.00041 * 17 16 13 45 45 H 1.09001 * 109.47436 * 59.99825 * 17 16 13 46 46 H 0.97004 * 120.00174 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4444 0.1275 5 1 3.8533 0.9936 1.0769 6 6 4.1788 0.6477 -1.0285 7 7 5.6412 0.7820 -0.9890 8 6 6.0538 2.1773 -1.1909 9 6 5.5165 3.0367 -0.0416 10 7 4.0644 2.8260 0.0600 11 6 3.2142 3.8715 0.0908 12 8 2.0298 3.6847 0.2727 13 6 3.7354 5.2724 -0.1008 14 1 4.6831 5.3828 0.4263 15 7 2.7626 6.2342 0.4344 16 6 3.9476 5.5381 -1.5925 17 6 4.5929 6.9128 -1.7790 18 6 4.8013 7.1747 -3.2483 19 1 4.5037 6.4346 -3.9763 20 6 5.3729 8.3588 -3.6632 21 7 5.5543 8.5876 -4.9454 22 14 5.8883 9.6387 -2.4039 23 1 7.2942 9.3919 -1.9941 24 1 5.7775 10.9937 -3.0015 25 1 5.0030 9.5482 -1.2151 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.7526 1.9295 -0.9319 32 1 1.6044 1.9818 0.8411 33 1 3.9072 -0.4034 -0.9305 34 1 3.8032 1.0335 -1.9762 35 1 6.0785 0.1741 -1.6654 36 1 7.1421 2.2355 -1.2106 37 1 5.6523 2.5421 -2.1363 38 1 5.9955 2.7409 0.8918 39 1 5.7237 4.0878 -0.2426 40 1 3.1169 7.1772 0.3764 41 1 1.8749 6.1518 -0.0384 42 1 4.6002 4.7708 -2.0090 43 1 2.9863 5.5153 -2.1059 44 1 3.9402 7.6800 -1.3625 45 1 5.5541 6.9356 -1.2655 46 1 5.9561 9.4209 -5.2374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424151242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -58.753593 kcal Electronic energy + Delta-G solvation = -23856.437186 eV Core-core repulsion = 20586.629413 eV Total energy + Delta-G solvation = -3269.807773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72364 -38.87084 -37.38624 -35.97776 -34.84767 -34.65720 -32.12138 -32.02229 -29.03980 -28.11289 -26.42090 -25.58308 -23.83710 -22.50901 -22.02478 -21.70461 -19.87707 -18.96493 -18.40930 -17.27538 -16.91327 -16.57530 -16.30752 -16.05337 -15.95188 -15.62742 -15.30408 -15.09981 -14.83199 -14.66425 -14.46415 -14.19682 -13.85303 -13.61017 -13.45468 -13.24074 -13.03904 -12.73710 -12.62895 -12.35410 -12.25144 -12.06770 -11.90058 -11.87994 -11.71867 -11.67063 -11.46373 -11.42758 -10.78699 -10.12195 -9.87698 -9.61247 -9.34976 -8.31345 -6.37208 1.37287 1.39807 1.50709 1.58609 1.89897 2.35137 3.04303 3.15671 3.40464 3.69410 3.85046 3.88082 4.02476 4.03795 4.10159 4.15501 4.20450 4.27137 4.35162 4.36450 4.53365 4.58708 4.65376 4.69073 4.75962 4.83654 4.86898 4.92600 5.00216 5.04490 5.07984 5.25879 5.32408 5.40269 5.42064 5.44639 5.60354 5.66012 5.88965 6.02896 6.22804 6.32064 6.44997 6.47244 6.70779 7.19782 7.27800 8.85494 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.004386 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.115489 B = 6382.118929 C = 6917.059758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.103 4.103 4 C 0.150 3.850 5 H 0.085 0.915 6 C 0.051 3.949 7 N -0.684 5.684 8 C 0.042 3.958 9 C 0.103 3.897 10 N -0.611 5.611 11 C 0.522 3.478 12 O -0.554 6.554 13 C 0.078 3.922 14 H 0.115 0.885 15 N -0.828 5.828 16 C -0.114 4.114 17 C -0.004 4.004 18 C -0.534 4.534 19 H 0.023 0.977 20 C 0.004 3.996 21 N -0.953 5.953 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.239 1.239 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.017 0.983 35 H 0.357 0.643 36 H 0.110 0.890 37 H 0.019 0.981 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.354 0.646 41 H 0.344 0.656 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.025 0.975 45 H 0.031 0.969 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -16.938 12.853 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.141 4.141 4 C 0.047 3.953 5 H 0.103 0.897 6 C -0.080 4.080 7 N -0.316 5.316 8 C -0.089 4.089 9 C -0.020 4.020 10 N -0.345 5.345 11 C 0.311 3.689 12 O -0.432 6.432 13 C -0.038 4.038 14 H 0.133 0.867 15 N -0.360 5.360 16 C -0.154 4.154 17 C -0.041 4.041 18 C -0.572 4.572 19 H 0.042 0.958 20 C -0.193 4.193 21 N -0.593 5.593 22 Si 0.776 3.224 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.162 1.162 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.036 0.964 35 H 0.177 0.823 36 H 0.128 0.872 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.853 -17.265 14.212 22.378 hybrid contribution 0.035 1.393 -2.451 2.820 sum -0.819 -15.871 11.761 19.771 Atomic orbital electron populations 1.21716 0.95791 1.01906 1.01192 1.21664 0.96209 0.95711 1.02625 1.21962 0.92953 0.96664 1.02541 1.21479 0.94189 0.80418 0.99198 0.89729 1.22410 0.88171 1.01426 0.95954 1.60309 1.07273 1.07288 1.56726 1.22332 1.01938 0.88657 0.95933 1.22099 0.78655 1.01089 1.00152 1.48251 1.07554 1.05852 1.72845 1.20738 0.86072 0.86981 0.75124 1.90648 1.17490 1.85274 1.49822 1.21499 0.97463 0.90057 0.94734 0.86725 1.58763 1.06019 1.08909 1.62300 1.21984 1.00068 0.99012 0.94314 1.19485 0.96385 0.93600 0.94659 1.21385 1.40384 1.02749 0.92666 0.95813 1.26063 0.95142 1.00701 0.97348 1.70079 1.45804 1.26516 1.16899 0.85621 0.79941 0.77185 0.79688 1.18735 1.21563 1.16210 0.93984 0.91257 0.93365 0.90718 0.91303 0.94556 0.90691 0.87309 0.96438 0.82311 0.87212 0.96279 0.88885 0.88867 0.83124 0.84253 0.92313 0.94415 0.95699 0.95053 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.09 16 2 C -0.12 -2.31 5.39 30.60 0.16 -2.15 16 3 C -0.10 -2.63 3.21 30.59 0.10 -2.54 16 4 C 0.15 3.48 3.20 44.96 0.14 3.62 16 5 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 6 C 0.05 0.99 5.38 86.38 0.46 1.45 16 7 N -0.68 -12.12 6.82 -513.01 -3.50 -15.62 16 8 C 0.04 0.83 6.70 86.38 0.58 1.41 16 9 C 0.10 2.22 6.06 86.35 0.52 2.74 16 10 N -0.61 -16.10 3.01 -794.08 -2.39 -18.49 16 11 C 0.52 16.73 6.77 87.65 0.59 17.32 16 12 O -0.55 -20.34 11.95 -3.04 -0.04 -20.38 16 13 C 0.08 2.43 2.35 44.17 0.10 2.53 16 14 H 0.12 3.16 6.61 -2.38 -0.02 3.14 16 15 N -0.83 -25.87 8.94 -171.80 -1.54 -27.41 16 16 C -0.11 -4.28 4.53 30.59 0.14 -4.14 16 17 C 0.00 -0.17 3.81 29.85 0.11 -0.05 16 18 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 19 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 20 C 0.00 0.24 5.47 84.65 0.46 0.71 16 21 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 22 Si 0.95 42.19 27.47 68.60 1.88 44.07 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.13 6.85 -2.39 -0.02 1.11 16 31 H 0.04 1.13 7.35 -2.39 -0.02 1.12 16 32 H 0.07 2.31 6.18 -2.39 -0.01 2.29 16 33 H 0.11 1.63 6.91 -2.39 -0.02 1.61 16 34 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.36 4.98 8.90 -89.69 -0.80 4.19 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.08 5.10 -2.39 -0.01 2.06 16 40 H 0.35 10.42 7.55 -89.70 -0.68 9.74 16 41 H 0.34 11.28 8.58 -89.69 -0.77 10.51 16 42 H 0.06 2.20 7.36 -2.39 -0.02 2.19 16 43 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.02 1.04 5.93 -2.39 -0.01 1.03 16 45 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 46 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.49 347.94 -2.24 -70.73 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.31 Total: 36.54 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.35 Total: -10.80 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -7.12 Total: -120.17 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.38 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Total: -68.49 -2.24 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.976 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds