Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53004 * 109.47053 * 174.80736 * 3 2 1 5 5 H 1.08997 * 109.78410 * 300.52039 * 4 3 2 6 6 C 1.53240 * 109.62698 * 61.00212 * 4 3 2 7 7 N 1.46900 * 109.33630 * 173.53915 * 6 4 3 8 8 C 1.46953 * 111.44687 * 296.98322 * 7 6 4 9 9 C 1.53242 * 109.31071 * 62.80988 * 8 7 6 10 10 N 1.47077 * 108.68243 * 306.47317 * 9 8 7 11 11 C 1.34776 * 120.88032 * 231.06422 * 10 9 8 12 12 O 1.21285 * 119.99716 * 174.91508 * 11 10 9 13 13 C 1.50694 * 120.00169 * 354.91446 * 11 10 9 14 14 H 1.09007 * 109.47267 * 40.00269 * 13 11 10 15 15 N 1.46910 * 109.47308 * 159.99804 * 13 11 10 16 16 C 1.52999 * 109.47529 * 280.00070 * 13 11 10 17 17 C 1.53000 * 109.47318 * 174.99734 * 16 13 11 18 18 C 1.50700 * 109.46801 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00379 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99833 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47512 * 90.00290 * 22 20 18 24 24 H 1.48505 * 109.47132 * 210.00390 * 22 20 18 25 25 H 1.48505 * 109.47281 * 329.99678 * 22 20 18 26 26 H 1.08998 * 109.46817 * 299.99724 * 1 2 3 27 27 H 1.08996 * 109.47331 * 60.00063 * 1 2 3 28 28 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47115 * 239.99561 * 2 1 3 30 30 H 1.09000 * 109.47217 * 120.00437 * 2 1 3 31 31 H 1.08998 * 109.46822 * 54.80657 * 3 2 1 32 32 H 1.09002 * 109.46717 * 294.80372 * 3 2 1 33 33 H 1.08999 * 109.49644 * 293.49966 * 6 4 3 34 34 H 1.08994 * 109.49151 * 53.55769 * 6 4 3 35 35 H 1.00903 * 111.00019 * 172.74971 * 7 6 4 36 36 H 1.08996 * 109.34410 * 302.96155 * 8 7 6 37 37 H 1.09000 * 109.67611 * 182.86312 * 8 7 6 38 38 H 1.08998 * 109.63173 * 186.66306 * 9 8 7 39 39 H 1.08995 * 109.62839 * 66.27925 * 9 8 7 40 40 H 1.00895 * 110.99393 * 60.00198 * 15 13 11 41 41 H 1.00893 * 110.99693 * 183.95490 * 15 13 11 42 42 H 1.08999 * 109.46810 * 295.00133 * 16 13 11 43 43 H 1.08998 * 109.46891 * 54.99844 * 16 13 11 44 44 H 1.08998 * 109.46994 * 299.99851 * 17 16 13 45 45 H 1.08998 * 109.47049 * 60.00207 * 17 16 13 46 46 H 0.97001 * 119.99443 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1306 5 1 3.8560 0.9509 1.0577 6 6 4.1841 0.7076 -1.0617 7 7 5.6458 0.8458 -1.0126 8 6 6.0573 2.2505 -1.1428 9 6 5.5098 3.0511 0.0436 10 7 4.0585 2.8297 0.1318 11 6 3.2039 3.8688 0.2119 12 8 2.0072 3.6728 0.1909 13 6 3.7352 5.2743 0.3276 14 1 4.6029 5.3893 -0.3222 15 7 2.6920 6.2270 -0.0753 16 6 4.1434 5.5476 1.7766 17 6 4.7973 6.9276 1.8706 18 6 5.1987 7.1970 3.2980 19 1 5.0070 6.4578 4.0616 20 6 5.8117 8.3869 3.6288 21 7 6.0456 9.2869 2.6988 22 14 6.3099 8.7206 5.3979 23 1 7.6940 8.2319 5.6231 24 1 6.2515 10.1809 5.6616 25 1 5.3801 8.0145 6.3157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.6027 1.9824 0.8398 32 1 1.7546 1.9287 -0.9329 33 1 3.9168 -0.3481 -1.0157 34 1 3.8087 1.1378 -1.9901 35 1 6.0870 0.2736 -1.7169 36 1 5.6592 2.6587 -2.0717 37 1 7.1454 2.3147 -1.1538 38 1 5.7100 4.1119 -0.1068 39 1 5.9879 2.7152 0.9638 40 1 1.8766 6.1400 0.5124 41 1 3.0438 7.1726 -0.0682 42 1 3.2598 5.5200 2.4143 43 1 4.8518 4.7868 2.1042 44 1 5.6809 6.9552 1.2329 45 1 4.0889 7.6885 1.5430 46 1 6.4765 10.1242 2.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -37.514222 kcal Electronic energy + Delta-G solvation = -23636.767845 eV Core-core repulsion = 20367.881080 eV Total energy + Delta-G solvation = -3268.886765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52063 -37.73366 -35.90483 -34.84860 -33.65944 -32.84003 -31.13426 -29.88561 -27.85826 -26.37118 -25.41599 -24.11221 -22.80213 -21.47876 -20.93799 -20.17645 -18.70302 -17.28965 -16.39016 -16.02146 -15.90054 -15.52699 -15.06966 -14.59749 -14.48792 -14.41344 -14.26905 -13.93181 -13.36061 -13.22233 -13.07571 -12.60240 -12.54700 -12.30910 -12.13205 -11.84916 -11.73507 -11.38359 -11.34820 -11.17486 -11.00789 -10.86002 -10.73031 -10.63318 -10.50912 -9.98123 -9.68516 -9.25343 -8.92170 -8.79166 -8.44180 -8.32198 -8.12460 -6.08873 -4.11850 2.93507 3.03061 3.27049 3.33899 3.37435 3.94415 4.39241 4.56706 4.79782 4.83866 4.99285 5.03310 5.08307 5.12629 5.20066 5.23887 5.27328 5.27694 5.43179 5.51544 5.62461 5.64313 5.69932 5.77383 5.84302 5.86383 5.89624 5.97904 6.14539 6.29514 6.38799 6.43397 6.54020 6.65658 6.82511 6.87481 7.06228 7.42543 7.51499 7.60508 7.67402 7.88241 7.91143 8.31090 8.48862 8.94074 9.53142 11.02003 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.003947 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.266900 B = 7091.755755 C = 7578.701224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.108 4.108 4 C 0.152 3.848 5 H 0.075 0.925 6 C 0.047 3.953 7 N -0.690 5.690 8 C 0.043 3.957 9 C 0.108 3.892 10 N -0.614 5.614 11 C 0.528 3.472 12 O -0.530 6.530 13 C 0.072 3.928 14 H 0.094 0.906 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.343 0.657 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.345 0.655 41 H 0.353 0.647 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -17.347 -8.781 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.146 4.146 4 C 0.048 3.952 5 H 0.093 0.907 6 C -0.083 4.083 7 N -0.322 5.322 8 C -0.087 4.087 9 C -0.016 4.016 10 N -0.348 5.348 11 C 0.317 3.683 12 O -0.407 6.407 13 C -0.043 4.043 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.161 0.839 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.318 -17.624 -8.842 19.995 hybrid contribution 0.568 0.789 0.968 1.372 sum -2.750 -16.835 -7.874 18.788 Atomic orbital electron populations 1.21700 0.95808 1.00890 1.02092 1.21728 0.96216 0.97798 1.01269 1.22179 0.92196 0.94925 1.05329 1.21371 0.94691 0.81272 0.97828 0.90745 1.22444 0.87626 1.00743 0.97492 1.60221 1.07846 1.08979 1.55111 1.22350 1.00708 0.88397 0.97279 1.21921 0.79921 1.00966 0.98763 1.48151 1.06864 1.05675 1.74160 1.20836 0.86293 0.86693 0.74513 1.90651 1.15636 1.84757 1.49626 1.21559 0.95147 0.89292 0.98323 0.88802 1.58765 1.08127 1.09192 1.60179 1.22367 1.00810 1.01867 0.92592 1.19093 0.95368 0.89340 0.97370 1.21178 1.39017 1.01976 0.93957 0.92731 1.25008 0.95774 0.96167 0.97336 1.69952 1.42714 1.07847 1.32715 0.86587 0.78963 0.77413 0.85024 1.20594 1.21162 1.19882 0.92654 0.92834 0.93247 0.92620 0.92335 0.88774 0.91076 0.89737 0.94720 0.83894 0.94625 0.89306 0.88566 0.90412 0.84178 0.83169 0.92735 0.92505 0.96423 0.96449 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.10 16 2 C -0.13 -1.34 5.46 -26.73 -0.15 -1.49 16 3 C -0.11 -1.41 3.16 -26.73 -0.08 -1.50 16 4 C 0.15 1.91 3.17 -67.49 -0.21 1.69 16 5 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 6 C 0.05 0.48 5.48 -3.70 -0.02 0.46 16 7 N -0.69 -6.65 6.81 -113.47 -0.77 -7.43 16 8 C 0.04 0.43 6.71 -3.67 -0.02 0.40 16 9 C 0.11 1.33 5.92 -3.60 -0.02 1.31 16 10 N -0.61 -8.68 3.01 -164.93 -0.50 -9.17 16 11 C 0.53 8.86 6.87 -10.99 -0.08 8.79 16 12 O -0.53 -9.86 11.76 5.55 0.07 -9.80 16 13 C 0.07 1.23 2.39 -68.86 -0.16 1.07 16 14 H 0.09 1.54 6.30 -51.92 -0.33 1.22 16 15 N -0.83 -14.41 8.94 -5.65 -0.05 -14.46 16 16 C -0.14 -2.70 4.73 -26.73 -0.13 -2.83 16 17 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.48 6.28 -51.93 -0.33 1.15 16 32 H 0.07 1.06 7.24 -51.93 -0.38 0.69 16 33 H 0.08 0.73 6.95 -51.93 -0.36 0.37 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 2.57 8.90 -39.29 -0.35 2.22 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.22 5.53 -51.93 -0.29 0.93 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.35 6.05 8.58 -39.29 -0.34 5.72 16 41 H 0.35 6.15 7.55 -39.30 -0.30 5.85 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.10 7.61 -51.93 -0.40 0.70 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -30.17 352.10 -9.25 -39.42 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.96 Total: 10.89 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.05 Total: -5.80 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.58 Total: -56.25 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.17 -9.25 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.902 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds