Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53004 * 109.47053 * 174.80736 * 3 2 1 5 5 H 1.08997 * 109.78410 * 300.52039 * 4 3 2 6 6 C 1.53240 * 109.62698 * 61.00212 * 4 3 2 7 7 N 1.46900 * 109.33630 * 173.53915 * 6 4 3 8 8 C 1.46953 * 111.44687 * 296.98322 * 7 6 4 9 9 C 1.53242 * 109.31071 * 62.80988 * 8 7 6 10 10 N 1.47077 * 108.68243 * 306.47317 * 9 8 7 11 11 C 1.34776 * 120.88032 * 231.06422 * 10 9 8 12 12 O 1.21285 * 119.99716 * 174.91508 * 11 10 9 13 13 C 1.50694 * 120.00169 * 354.91446 * 11 10 9 14 14 H 1.09007 * 109.47267 * 40.00269 * 13 11 10 15 15 N 1.46910 * 109.47308 * 159.99804 * 13 11 10 16 16 C 1.52999 * 109.47529 * 280.00070 * 13 11 10 17 17 C 1.53000 * 109.47318 * 174.99734 * 16 13 11 18 18 C 1.50700 * 109.46801 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00379 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99833 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47512 * 90.00290 * 22 20 18 24 24 H 1.48505 * 109.47132 * 210.00390 * 22 20 18 25 25 H 1.48505 * 109.47281 * 329.99678 * 22 20 18 26 26 H 1.08998 * 109.46817 * 299.99724 * 1 2 3 27 27 H 1.08996 * 109.47331 * 60.00063 * 1 2 3 28 28 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47115 * 239.99561 * 2 1 3 30 30 H 1.09000 * 109.47217 * 120.00437 * 2 1 3 31 31 H 1.08998 * 109.46822 * 54.80657 * 3 2 1 32 32 H 1.09002 * 109.46717 * 294.80372 * 3 2 1 33 33 H 1.08999 * 109.49644 * 293.49966 * 6 4 3 34 34 H 1.08994 * 109.49151 * 53.55769 * 6 4 3 35 35 H 1.00903 * 111.00019 * 172.74971 * 7 6 4 36 36 H 1.08996 * 109.34410 * 302.96155 * 8 7 6 37 37 H 1.09000 * 109.67611 * 182.86312 * 8 7 6 38 38 H 1.08998 * 109.63173 * 186.66306 * 9 8 7 39 39 H 1.08995 * 109.62839 * 66.27925 * 9 8 7 40 40 H 1.00895 * 110.99393 * 60.00198 * 15 13 11 41 41 H 1.00893 * 110.99693 * 183.95490 * 15 13 11 42 42 H 1.08999 * 109.46810 * 295.00133 * 16 13 11 43 43 H 1.08998 * 109.46891 * 54.99844 * 16 13 11 44 44 H 1.08998 * 109.46994 * 299.99851 * 17 16 13 45 45 H 1.08998 * 109.47049 * 60.00207 * 17 16 13 46 46 H 0.97001 * 119.99443 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1306 5 1 3.8560 0.9509 1.0577 6 6 4.1841 0.7076 -1.0617 7 7 5.6458 0.8458 -1.0126 8 6 6.0573 2.2505 -1.1428 9 6 5.5098 3.0511 0.0436 10 7 4.0585 2.8297 0.1318 11 6 3.2039 3.8688 0.2119 12 8 2.0072 3.6728 0.1909 13 6 3.7352 5.2743 0.3276 14 1 4.6029 5.3893 -0.3222 15 7 2.6920 6.2270 -0.0753 16 6 4.1434 5.5476 1.7766 17 6 4.7973 6.9276 1.8706 18 6 5.1987 7.1970 3.2980 19 1 5.0070 6.4578 4.0616 20 6 5.8117 8.3869 3.6288 21 7 6.0456 9.2869 2.6988 22 14 6.3099 8.7206 5.3979 23 1 7.6940 8.2319 5.6231 24 1 6.2515 10.1809 5.6616 25 1 5.3801 8.0145 6.3157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.6027 1.9824 0.8398 32 1 1.7546 1.9287 -0.9329 33 1 3.9168 -0.3481 -1.0157 34 1 3.8087 1.1378 -1.9901 35 1 6.0870 0.2736 -1.7169 36 1 5.6592 2.6587 -2.0717 37 1 7.1454 2.3147 -1.1538 38 1 5.7100 4.1119 -0.1068 39 1 5.9879 2.7152 0.9638 40 1 1.8766 6.1400 0.5124 41 1 3.0438 7.1726 -0.0682 42 1 3.2598 5.5200 2.4143 43 1 4.8518 4.7868 2.1042 44 1 5.6809 6.9552 1.2329 45 1 4.0889 7.6885 1.5430 46 1 6.4765 10.1242 2.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424151247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -59.475907 kcal Electronic energy + Delta-G solvation = -23637.720175 eV Core-core repulsion = 20367.881080 eV Total energy + Delta-G solvation = -3269.839095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71105 -38.85906 -37.30638 -35.96854 -34.86320 -34.64581 -32.03580 -31.70060 -28.98398 -27.89048 -26.41876 -25.71460 -23.86914 -22.76129 -22.00624 -21.57221 -19.95027 -18.69794 -18.12978 -17.28083 -16.85986 -16.67466 -16.48328 -16.04622 -15.72972 -15.65681 -15.28909 -15.16000 -14.73166 -14.61572 -14.18440 -14.07554 -13.76556 -13.53610 -13.47122 -13.19230 -12.94506 -12.76811 -12.67292 -12.50419 -12.31348 -12.13529 -12.07284 -11.80921 -11.66001 -11.55148 -11.44372 -11.30497 -10.56512 -10.12502 -9.84392 -9.58679 -9.31130 -8.21849 -6.32234 1.39420 1.40198 1.50707 1.59880 1.89495 2.39736 3.11714 3.16302 3.42329 3.72757 3.86070 3.88760 4.00955 4.05172 4.15640 4.20327 4.22009 4.28813 4.34483 4.38961 4.60740 4.63854 4.68933 4.76919 4.82111 4.83348 4.92785 5.01289 5.03636 5.06259 5.09906 5.27325 5.41665 5.45273 5.45459 5.63714 5.67191 5.79400 5.92024 6.04088 6.20532 6.34461 6.45379 6.48890 6.82560 7.19689 7.36903 8.88836 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.003947 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.266900 B = 7091.755755 C = 7578.701224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.097 4.097 4 C 0.146 3.854 5 H 0.076 0.924 6 C 0.055 3.945 7 N -0.691 5.691 8 C 0.049 3.951 9 C 0.100 3.900 10 N -0.610 5.610 11 C 0.524 3.476 12 O -0.553 6.553 13 C 0.079 3.921 14 H 0.104 0.896 15 N -0.829 5.829 16 C -0.117 4.117 17 C 0.033 3.967 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.027 0.973 35 H 0.360 0.640 36 H 0.032 0.968 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.343 0.657 41 H 0.352 0.648 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -19.286 -8.737 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.136 4.136 4 C 0.043 3.957 5 H 0.094 0.906 6 C -0.075 4.075 7 N -0.324 5.324 8 C -0.082 4.082 9 C -0.022 4.022 10 N -0.344 5.344 11 C 0.312 3.688 12 O -0.432 6.432 13 C -0.036 4.036 14 H 0.121 0.879 15 N -0.360 5.360 16 C -0.157 4.157 17 C -0.004 4.004 18 C -0.583 4.583 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.565 5.565 22 Si 0.783 3.217 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.194 1.194 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.045 0.955 35 H 0.180 0.820 36 H 0.050 0.950 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.021 0.979 45 H 0.020 0.980 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.371 -19.600 -8.812 21.621 hybrid contribution 0.285 1.382 0.945 1.698 sum -2.086 -18.218 -7.867 19.954 Atomic orbital electron populations 1.21709 0.95765 1.01881 1.01203 1.21680 0.96235 0.95786 1.02606 1.21933 0.92580 0.96382 1.02658 1.21544 0.94508 0.80452 0.99164 0.90604 1.22354 0.87951 1.01509 0.95659 1.60186 1.07401 1.08855 1.55912 1.22305 1.01833 0.88322 0.95691 1.22089 0.78787 1.01285 1.00078 1.48221 1.07432 1.05893 1.72807 1.20687 0.86256 0.86932 0.74915 1.90664 1.16555 1.85086 1.50881 1.21467 0.95467 0.90048 0.96639 0.87854 1.58778 1.08093 1.09164 1.59970 1.22089 0.99858 0.99455 0.94332 1.18941 0.94548 0.91295 0.95635 1.21592 1.39136 1.02205 0.95362 0.92903 1.25844 0.95745 0.95984 1.01580 1.70060 1.43429 1.08298 1.34761 0.85549 0.78903 0.77314 0.79904 1.19599 1.20756 1.19357 0.93843 0.93507 0.91261 0.90731 0.91356 0.91935 0.93353 0.87430 0.95522 0.82016 0.94977 0.87118 0.89179 0.90322 0.84359 0.83356 0.93995 0.92002 0.97891 0.97998 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.13 -2.34 5.46 30.59 0.17 -2.17 16 3 C -0.10 -2.51 3.16 30.60 0.10 -2.42 16 4 C 0.15 3.50 3.17 44.96 0.14 3.64 16 5 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 6 C 0.06 1.00 5.48 86.38 0.47 1.48 16 7 N -0.69 -11.33 6.81 -512.90 -3.49 -14.82 16 8 C 0.05 0.87 6.71 86.37 0.58 1.45 16 9 C 0.10 2.36 5.92 86.35 0.51 2.87 16 10 N -0.61 -16.92 3.01 -794.11 -2.39 -19.31 16 11 C 0.52 17.75 6.87 87.66 0.60 18.35 16 12 O -0.55 -21.11 11.76 -3.04 -0.04 -21.14 16 13 C 0.08 2.74 2.39 44.17 0.11 2.85 16 14 H 0.10 3.40 6.30 -2.38 -0.02 3.39 16 15 N -0.83 -29.35 8.94 -171.78 -1.54 -30.89 16 16 C -0.12 -4.71 4.73 30.59 0.14 -4.57 16 17 C 0.03 1.63 4.74 29.85 0.14 1.77 16 18 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 19 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.13 6.90 -2.39 -0.02 1.12 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 2.02 6.28 -2.39 -0.01 2.00 16 32 H 0.05 1.46 7.24 -2.39 -0.02 1.44 16 33 H 0.11 1.48 6.95 -2.39 -0.02 1.46 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.36 4.16 8.90 -89.69 -0.80 3.36 16 36 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 2.22 5.53 -2.39 -0.01 2.20 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.34 12.39 8.58 -89.70 -0.77 11.62 16 41 H 0.35 12.57 7.55 -89.70 -0.68 11.89 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.39 7.61 -2.39 -0.02 2.38 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 46 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -64.79 352.10 -2.03 -66.82 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -1.26 Total: 35.58 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.37 Total: -7.83 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -7.14 Total: -118.90 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.14 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -64.79 -2.03 -66.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.349 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds