Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.50003 * 2 1 4 4 N 1.46494 * 109.47138 * 59.92100 * 3 2 1 5 5 C 1.34781 * 119.99886 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99784 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00012 * 179.97438 * 5 4 3 8 8 H 1.08997 * 109.47405 * 39.99893 * 7 5 4 9 9 N 1.46902 * 109.47310 * 159.99689 * 7 5 4 10 10 C 1.52997 * 109.47535 * 279.99630 * 7 5 4 11 11 C 1.53002 * 109.47535 * 174.99737 * 10 7 5 12 12 C 1.50696 * 109.46997 * 179.97438 * 11 10 7 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.53119 * 109.50523 * 239.91835 * 2 1 3 21 21 C 1.53117 * 109.16184 * 297.67668 * 20 2 1 22 22 C 1.53044 * 109.27696 * 302.34541 * 21 20 2 23 23 N 1.46845 * 109.52113 * 59.18148 * 22 21 20 24 24 C 1.46857 * 111.19839 * 298.25755 * 23 22 21 25 25 H 1.09004 * 109.46780 * 60.00327 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47682 * 300.00816 * 1 2 3 28 28 H 1.09002 * 109.46705 * 299.91477 * 3 2 1 29 29 H 1.08999 * 109.46504 * 179.91479 * 3 2 1 30 30 H 0.97003 * 120.00369 * 359.97438 * 4 3 2 31 31 H 1.00900 * 111.00079 * 296.05153 * 9 7 5 32 32 H 1.00904 * 110.99762 * 59.99982 * 9 7 5 33 33 H 1.09005 * 109.46889 * 55.00061 * 10 7 5 34 34 H 1.09002 * 109.47401 * 295.00150 * 10 7 5 35 35 H 1.09005 * 109.46767 * 60.00250 * 11 10 7 36 36 H 1.09002 * 109.47113 * 300.00590 * 11 10 7 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.51933 * 57.58407 * 20 2 1 39 39 H 1.08997 * 109.51788 * 177.76813 * 20 2 1 40 40 H 1.09002 * 109.50492 * 62.28511 * 21 20 2 41 41 H 1.09000 * 109.50346 * 182.40602 * 21 20 2 42 42 H 1.08992 * 109.46311 * 179.19421 * 22 21 20 43 43 H 1.08993 * 109.46087 * 299.16431 * 22 21 20 44 44 H 1.00898 * 111.00092 * 174.16500 * 23 22 21 45 45 H 1.09000 * 109.45838 * 301.72351 * 24 23 22 46 46 H 1.09000 * 109.45933 * 181.76441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5513 2.1337 1.1952 5 6 1.8768 3.4241 1.4080 6 8 2.5754 4.0128 0.6102 7 6 1.3728 4.1355 2.6371 8 1 1.4185 3.4608 3.4919 9 7 2.2098 5.3142 2.8986 10 6 -0.0747 4.5776 2.4131 11 6 -0.6270 5.1882 3.7027 12 6 -2.0525 5.6241 3.4818 13 1 -2.5182 5.4797 2.5181 14 6 -2.7622 6.2074 4.5100 15 7 -4.0065 6.5873 4.3174 16 14 -1.9565 6.4577 6.1766 17 1 -2.1915 5.2617 7.0248 18 1 -0.4961 6.6570 5.9954 19 1 -2.5414 7.6538 6.8344 20 6 2.0413 -0.7234 -1.2489 21 6 1.5759 -2.1817 -1.2109 22 6 2.0862 -2.8417 0.0721 23 7 1.5690 -2.1135 1.2377 24 6 2.0417 -0.7231 1.2478 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.6789 1.9558 -0.8908 29 1 3.1308 1.4416 0.0015 30 1 0.9922 1.6630 1.8330 31 1 3.1579 5.0440 3.1133 32 1 2.1842 5.9557 2.1201 33 1 -0.6786 3.7148 2.1320 34 1 -0.1086 5.3202 1.6159 35 1 -0.0230 6.0510 3.9839 36 1 -0.5930 4.4456 4.4999 37 1 -4.5059 6.9973 5.0408 38 1 1.6438 -0.2372 -2.1398 39 1 3.1305 -0.6891 -1.2694 40 1 0.4866 -2.2166 -1.2297 41 1 1.9725 -2.7129 -2.0761 42 1 1.7446 -3.8760 0.1091 43 1 3.1759 -2.8187 0.0836 44 1 1.8132 -2.5846 2.0959 45 1 3.1316 -0.7101 1.2540 46 1 1.6676 -0.2190 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424161325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -60.222280 kcal Electronic energy + Delta-G solvation = -23052.582481 eV Core-core repulsion = 19782.711021 eV Total energy + Delta-G solvation = -3269.871460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35969 -39.22146 -35.61191 -35.09497 -32.90695 -32.72815 -31.57522 -30.46604 -27.56430 -27.07874 -25.79445 -24.23713 -23.30347 -21.63263 -20.44468 -19.88595 -18.70919 -17.55408 -16.67284 -16.57024 -15.97378 -15.60897 -15.34492 -14.94401 -14.52410 -14.38047 -14.22720 -14.05691 -13.73746 -13.45081 -13.21263 -13.02981 -12.62951 -12.45857 -12.30914 -11.95842 -11.69467 -11.62663 -11.35855 -11.01186 -10.94112 -10.85491 -10.71083 -10.54641 -10.36316 -9.90059 -9.75936 -9.55535 -9.08941 -9.05663 -8.79397 -8.48643 -8.37296 -5.97556 -3.95021 2.74643 3.25715 3.37373 3.45189 3.53392 3.79819 4.32610 4.40277 4.52523 4.53286 4.73768 4.79476 4.87085 4.96137 5.04989 5.16570 5.25774 5.29628 5.36723 5.37590 5.41636 5.46843 5.56921 5.58907 5.69626 5.70783 5.72017 5.89851 5.92299 5.99022 6.27493 6.31715 6.43784 6.50537 6.63518 6.89816 6.99707 7.27234 7.38440 7.54172 7.62229 7.68506 7.88734 8.28882 8.60181 9.07384 9.65514 11.15976 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.003465 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.352794 B = 8077.994834 C = 8618.415807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.128 3.872 4 N -0.727 5.727 5 C 0.483 3.517 6 O -0.554 6.554 7 C 0.075 3.925 8 H 0.097 0.903 9 N -0.811 5.811 10 C -0.087 4.087 11 C -0.004 4.004 12 C -0.521 4.521 13 H 0.069 0.931 14 C 0.065 3.935 15 N -0.907 5.907 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.260 1.260 19 H -0.290 1.290 20 C -0.109 4.109 21 C -0.119 4.119 22 C 0.057 3.943 23 N -0.686 5.686 24 C 0.067 3.933 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.402 0.598 31 H 0.334 0.666 32 H 0.350 0.650 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.344 0.656 45 H 0.031 0.969 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 -19.600 -8.234 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C 0.004 3.996 4 N -0.381 5.381 5 C 0.268 3.732 6 O -0.432 6.432 7 C -0.041 4.041 8 H 0.114 0.886 9 N -0.339 5.339 10 C -0.125 4.125 11 C -0.042 4.042 12 C -0.559 4.559 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.184 1.184 19 H -0.216 1.216 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.072 4.072 23 N -0.317 5.317 24 C -0.062 4.062 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.238 0.762 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.162 0.838 45 H 0.049 0.951 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.955 -18.778 -8.405 24.859 hybrid contribution 1.521 -0.567 0.559 1.717 sum 15.476 -19.345 -7.846 25.986 Atomic orbital electron populations 1.21818 0.92834 1.02932 1.01752 1.20825 0.97507 0.93207 0.95430 1.21349 0.98613 0.90920 0.88743 1.46211 1.53852 1.12566 1.25474 1.22608 0.79556 0.81608 0.89403 1.90650 1.38761 1.66164 1.47602 1.21850 0.97061 0.92184 0.93018 0.88552 1.59039 1.14564 1.14245 1.46046 1.21462 0.89025 1.00458 1.01573 1.19486 0.96400 0.96355 0.91925 1.21189 0.95770 1.39382 0.99546 0.91311 1.25019 0.94652 0.94988 0.98872 1.69928 1.09545 1.42206 1.32928 0.86771 0.80734 0.77607 0.84212 1.20515 1.18411 1.21636 1.21574 1.00398 0.95616 0.97128 1.21621 1.02207 0.95214 0.96592 1.21929 0.96695 0.97518 0.91104 1.60210 1.63608 1.02559 1.05358 1.21955 0.96959 0.89220 0.98070 0.92913 0.90842 0.92513 0.91342 0.92008 0.76188 0.85406 0.83622 0.92211 0.92229 0.94804 0.97372 0.92863 0.91275 0.92110 0.90573 0.91595 0.90834 0.95421 0.83812 0.95097 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.86 37.16 0.29 -0.99 16 2 C -0.07 -0.59 0.53 -154.43 -0.08 -0.67 16 3 C 0.13 1.38 4.57 -4.04 -0.02 1.36 16 4 N -0.73 -8.65 4.97 -60.29 -0.30 -8.95 16 5 C 0.48 7.29 7.07 -10.99 -0.08 7.21 16 6 O -0.55 -9.99 16.25 5.55 0.09 -9.90 16 7 C 0.07 1.18 3.15 -68.87 -0.22 0.96 16 8 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 9 N -0.81 -12.84 8.44 -5.66 -0.05 -12.89 16 10 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 11 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 12 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 16 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 C -0.11 -0.83 4.79 -26.61 -0.13 -0.96 16 21 C -0.12 -0.81 5.74 -26.65 -0.15 -0.96 16 22 C 0.06 0.38 6.55 -3.83 -0.03 0.35 16 23 N -0.69 -5.08 6.13 -113.82 -0.70 -5.77 16 24 C 0.07 0.55 5.09 -3.83 -0.02 0.53 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 27 H 0.06 0.57 6.86 -51.93 -0.36 0.22 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 4.20 6.18 -40.82 -0.25 3.94 16 31 H 0.33 4.55 9.06 -39.29 -0.36 4.19 16 32 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.57 6.58 -51.93 -0.34 0.23 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.34 2.10 8.90 -39.29 -0.35 1.75 16 45 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.62 6.90 -51.93 -0.36 0.26 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -32.99 354.61 -8.67 -41.66 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.07 Total: 9.33 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.09 Total: -8.63 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.27 Total: -55.16 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.99 -8.67 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.561 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds