Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.50003 * 2 1 4 4 N 1.46494 * 109.47138 * 59.92100 * 3 2 1 5 5 C 1.34781 * 119.99886 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99784 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00012 * 179.97438 * 5 4 3 8 8 H 1.08997 * 109.47405 * 39.99893 * 7 5 4 9 9 N 1.46902 * 109.47310 * 159.99689 * 7 5 4 10 10 C 1.52997 * 109.47535 * 279.99630 * 7 5 4 11 11 C 1.53002 * 109.47535 * 174.99737 * 10 7 5 12 12 C 1.50696 * 109.46997 * 179.97438 * 11 10 7 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.53119 * 109.50523 * 239.91835 * 2 1 3 21 21 C 1.53117 * 109.16184 * 297.67668 * 20 2 1 22 22 C 1.53044 * 109.27696 * 302.34541 * 21 20 2 23 23 N 1.46845 * 109.52113 * 59.18148 * 22 21 20 24 24 C 1.46857 * 111.19839 * 298.25755 * 23 22 21 25 25 H 1.09004 * 109.46780 * 60.00327 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47682 * 300.00816 * 1 2 3 28 28 H 1.09002 * 109.46705 * 299.91477 * 3 2 1 29 29 H 1.08999 * 109.46504 * 179.91479 * 3 2 1 30 30 H 0.97003 * 120.00369 * 359.97438 * 4 3 2 31 31 H 1.00900 * 111.00079 * 296.05153 * 9 7 5 32 32 H 1.00904 * 110.99762 * 59.99982 * 9 7 5 33 33 H 1.09005 * 109.46889 * 55.00061 * 10 7 5 34 34 H 1.09002 * 109.47401 * 295.00150 * 10 7 5 35 35 H 1.09005 * 109.46767 * 60.00250 * 11 10 7 36 36 H 1.09002 * 109.47113 * 300.00590 * 11 10 7 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.51933 * 57.58407 * 20 2 1 39 39 H 1.08997 * 109.51788 * 177.76813 * 20 2 1 40 40 H 1.09002 * 109.50492 * 62.28511 * 21 20 2 41 41 H 1.09000 * 109.50346 * 182.40602 * 21 20 2 42 42 H 1.08992 * 109.46311 * 179.19421 * 22 21 20 43 43 H 1.08993 * 109.46087 * 299.16431 * 22 21 20 44 44 H 1.00898 * 111.00092 * 174.16500 * 23 22 21 45 45 H 1.09000 * 109.45838 * 301.72351 * 24 23 22 46 46 H 1.09000 * 109.45933 * 181.76441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5513 2.1337 1.1952 5 6 1.8768 3.4241 1.4080 6 8 2.5754 4.0128 0.6102 7 6 1.3728 4.1355 2.6371 8 1 1.4185 3.4608 3.4919 9 7 2.2098 5.3142 2.8986 10 6 -0.0747 4.5776 2.4131 11 6 -0.6270 5.1882 3.7027 12 6 -2.0525 5.6241 3.4818 13 1 -2.5182 5.4797 2.5181 14 6 -2.7622 6.2074 4.5100 15 7 -4.0065 6.5873 4.3174 16 14 -1.9565 6.4577 6.1766 17 1 -2.1915 5.2617 7.0248 18 1 -0.4961 6.6570 5.9954 19 1 -2.5414 7.6538 6.8344 20 6 2.0413 -0.7234 -1.2489 21 6 1.5759 -2.1817 -1.2109 22 6 2.0862 -2.8417 0.0721 23 7 1.5690 -2.1135 1.2377 24 6 2.0417 -0.7231 1.2478 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.6789 1.9558 -0.8908 29 1 3.1308 1.4416 0.0015 30 1 0.9922 1.6630 1.8330 31 1 3.1579 5.0440 3.1133 32 1 2.1842 5.9557 2.1201 33 1 -0.6786 3.7148 2.1320 34 1 -0.1086 5.3202 1.6159 35 1 -0.0230 6.0510 3.9839 36 1 -0.5930 4.4456 4.4999 37 1 -4.5059 6.9973 5.0408 38 1 1.6438 -0.2372 -2.1398 39 1 3.1305 -0.6891 -1.2694 40 1 0.4866 -2.2166 -1.2297 41 1 1.9725 -2.7129 -2.0761 42 1 1.7446 -3.8760 0.1091 43 1 3.1759 -2.8187 0.0836 44 1 1.8132 -2.5846 2.0959 45 1 3.1316 -0.7101 1.2540 46 1 1.6676 -0.2190 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424161325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -86.329876 kcal Electronic energy + Delta-G solvation = -23053.714591 eV Core-core repulsion = 19782.711021 eV Total energy + Delta-G solvation = -3271.003570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33808 -40.14432 -36.91660 -36.20436 -34.77197 -33.67019 -32.28800 -32.22867 -28.82354 -27.95512 -27.05101 -24.99599 -24.62942 -22.48193 -21.97185 -21.20890 -19.41980 -18.98773 -18.35443 -17.57762 -16.97715 -16.84490 -16.28339 -16.19484 -15.59973 -15.50095 -15.21370 -15.08321 -14.87723 -14.66678 -14.49239 -14.03450 -13.92556 -13.71249 -13.45644 -13.24644 -12.79206 -12.66754 -12.53875 -12.36107 -12.03245 -11.99161 -11.73598 -11.59209 -11.58202 -11.38922 -11.28011 -11.18825 -11.09491 -10.69736 -10.13026 -9.65737 -9.35282 -8.23901 -6.27182 1.40921 1.44579 1.51929 1.58691 2.19895 2.42912 3.12732 3.21606 3.56873 3.64739 3.72700 3.83943 3.86471 4.08330 4.15990 4.25784 4.27960 4.30586 4.50445 4.60599 4.64912 4.71817 4.72473 4.77209 4.82232 4.85605 4.92404 5.04197 5.10424 5.15236 5.15965 5.26516 5.30726 5.42222 5.51248 5.55673 5.66798 5.75160 6.06603 6.07848 6.33725 6.44269 6.50478 6.53805 6.81589 7.14660 7.37374 8.93085 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.003465 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.352794 B = 8077.994834 C = 8618.415807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C 0.131 3.869 4 N -0.712 5.712 5 C 0.486 3.514 6 O -0.585 6.585 7 C 0.084 3.916 8 H 0.121 0.879 9 N -0.819 5.819 10 C -0.079 4.079 11 C 0.003 3.997 12 C -0.532 4.532 13 H 0.027 0.973 14 C 0.002 3.998 15 N -0.956 5.956 16 Si 0.953 3.047 17 H -0.264 1.264 18 H -0.244 1.244 19 H -0.290 1.290 20 C -0.109 4.109 21 C -0.117 4.117 22 C 0.056 3.944 23 N -0.692 5.692 24 C 0.070 3.930 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.412 0.588 31 H 0.348 0.652 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.029 0.971 36 H 0.023 0.977 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.352 0.648 45 H 0.031 0.969 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.501 -21.288 -7.009 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C 0.006 3.994 4 N -0.365 5.365 5 C 0.271 3.729 6 O -0.465 6.465 7 C -0.032 4.032 8 H 0.138 0.862 9 N -0.348 5.348 10 C -0.117 4.117 11 C -0.035 4.035 12 C -0.570 4.570 13 H 0.046 0.954 14 C -0.194 4.194 15 N -0.597 5.597 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.167 1.167 19 H -0.216 1.216 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.073 4.073 23 N -0.324 5.324 24 C -0.060 4.060 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.249 0.751 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.171 0.829 45 H 0.049 0.951 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.778 -20.520 -7.178 26.861 hybrid contribution 0.889 -0.072 0.072 0.895 sum 16.667 -20.591 -7.106 27.428 Atomic orbital electron populations 1.21783 0.93420 1.02817 1.01018 1.20742 0.96820 0.91962 0.96587 1.21397 0.98547 0.91901 0.87525 1.46116 1.52925 1.11676 1.25804 1.22398 0.79385 0.82348 0.88775 1.90643 1.40392 1.67062 1.48400 1.21668 0.94565 0.92650 0.94277 0.86150 1.59026 1.15638 1.14237 1.45849 1.21253 0.91722 0.99914 0.98833 1.19368 0.93142 0.96629 0.94322 1.21576 0.98285 1.39223 0.97904 0.95441 1.26029 0.95146 0.94679 1.03577 1.70088 1.11456 1.43614 1.34537 0.85615 0.80233 0.77950 0.78593 1.18848 1.16741 1.21591 1.21583 1.00587 0.96142 0.96410 1.21618 1.01752 0.94658 0.97415 1.21969 0.96843 0.97898 0.90572 1.60201 1.63787 1.02315 1.06138 1.21892 0.96904 0.89727 0.97462 0.93615 0.90628 0.93251 0.92723 0.92034 0.75074 0.83807 0.84128 0.91680 0.94276 0.95255 0.95871 0.92668 0.91453 0.91751 0.91316 0.90283 0.89810 0.95153 0.82881 0.95065 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.86 71.98 0.57 -1.82 16 2 C -0.06 -0.96 0.53 -52.13 -0.03 -0.98 16 3 C 0.13 2.68 4.57 86.38 0.39 3.07 16 4 N -0.71 -15.93 4.97 -463.06 -2.30 -18.23 16 5 C 0.49 14.02 7.07 87.65 0.62 14.64 16 6 O -0.58 -20.63 16.25 -3.04 -0.05 -20.68 16 7 C 0.08 2.49 3.15 44.17 0.14 2.63 16 8 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 9 N -0.82 -24.46 8.44 -171.81 -1.45 -25.91 16 10 C -0.08 -3.00 4.78 30.59 0.15 -2.85 16 11 C 0.00 0.13 3.93 29.85 0.12 0.25 16 12 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 13 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 14 C 0.00 0.10 5.47 84.66 0.46 0.57 16 15 N -0.96 -60.92 13.96 21.45 0.30 -60.62 16 16 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 C -0.11 -1.51 4.79 30.67 0.15 -1.36 16 21 C -0.12 -1.37 5.74 30.65 0.18 -1.20 16 22 C 0.06 0.62 6.55 86.33 0.57 1.19 16 23 N -0.69 -8.81 6.13 -514.01 -3.15 -11.96 16 24 C 0.07 0.99 5.09 86.32 0.44 1.43 16 25 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 1.34 6.01 -2.39 -0.01 1.32 16 27 H 0.05 0.94 6.86 -2.39 -0.02 0.93 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.41 7.79 6.18 -92.71 -0.57 7.21 16 31 H 0.35 8.71 9.06 -89.69 -0.81 7.90 16 32 H 0.35 10.95 8.58 -89.69 -0.77 10.18 16 33 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.38 6.81 -2.38 -0.02 1.37 16 36 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 37 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.93 6.58 -2.39 -0.02 0.91 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.35 3.54 8.90 -89.70 -0.80 2.74 16 45 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 1.07 6.90 -2.39 -0.02 1.06 16 Total: -1.00 -71.32 354.61 -2.79 -74.11 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -2.01 Total: 31.72 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.99 Total: -15.12 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -6.60 Total: -116.71 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -71.32 -2.79 -74.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.223 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds