Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.50421 * 2 1 4 4 N 1.46500 * 109.47399 * 299.92133 * 3 2 1 5 5 C 1.34771 * 120.00294 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00127 * 180.02562 * 5 4 3 8 8 H 1.09002 * 109.47060 * 319.99931 * 7 5 4 9 9 N 1.46901 * 109.46921 * 199.99750 * 7 5 4 10 10 C 1.53002 * 109.47419 * 80.00012 * 7 5 4 11 11 C 1.52997 * 109.47469 * 184.99997 * 10 7 5 12 12 C 1.50699 * 109.47339 * 179.97438 * 11 10 7 13 13 H 1.07999 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00088 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47114 * 89.99384 * 16 14 12 18 18 H 1.48495 * 109.46938 * 209.99970 * 16 14 12 19 19 H 1.48503 * 109.46732 * 329.99688 * 16 14 12 20 20 C 1.53118 * 109.53376 * 120.10317 * 2 1 3 21 21 C 1.53111 * 109.16335 * 62.30665 * 20 2 1 22 22 C 1.53034 * 109.28313 * 57.65267 * 21 20 2 23 23 N 1.46851 * 109.52139 * 300.82060 * 22 21 20 24 24 C 1.46849 * 111.19390 * 61.74260 * 23 22 21 25 25 H 1.09000 * 109.47029 * 59.99643 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46537 * 299.99810 * 1 2 3 28 28 H 1.09002 * 109.46909 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47214 * 59.92216 * 3 2 1 30 30 H 0.97005 * 119.99560 * 0.02562 * 4 3 2 31 31 H 1.00898 * 111.00245 * 299.99784 * 9 7 5 32 32 H 1.00904 * 111.00313 * 63.95601 * 9 7 5 33 33 H 1.09008 * 109.46873 * 305.00091 * 10 7 5 34 34 H 1.08997 * 109.47047 * 64.99780 * 10 7 5 35 35 H 1.08997 * 109.47151 * 300.00410 * 11 10 7 36 36 H 1.09006 * 109.46918 * 59.99351 * 11 10 7 37 37 H 0.96998 * 120.00384 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.51634 * 182.20868 * 20 2 1 39 39 H 1.08997 * 109.52139 * 302.39053 * 20 2 1 40 40 H 1.09007 * 109.50262 * 297.70910 * 21 20 2 41 41 H 1.09002 * 109.53927 * 177.61674 * 21 20 2 42 42 H 1.08997 * 109.46572 * 180.80899 * 22 21 20 43 43 H 1.09000 * 109.45483 * 60.83033 * 22 21 20 44 44 H 1.00896 * 111.00213 * 297.64839 * 23 22 21 45 45 H 1.09002 * 109.45686 * 178.23907 * 24 23 22 46 46 H 1.08992 * 109.45793 * 58.26956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 7 1.5545 2.1326 -1.1971 5 6 1.8815 3.4224 -1.4108 6 8 2.5781 4.0118 -0.6119 7 6 1.3807 4.1327 -2.6419 8 1 1.4278 3.4568 -3.4958 9 7 2.2192 5.3104 -2.9028 10 6 -0.0670 4.5761 -2.4216 11 6 -0.6159 5.1857 -3.7131 12 6 -2.0420 5.6218 -3.4962 13 1 -2.5101 5.4782 -2.5336 14 6 -2.7494 6.2032 -4.5270 15 7 -2.1795 6.3776 -5.6994 16 14 -4.5170 6.7444 -4.2580 17 1 -4.5370 8.1509 -3.7819 18 1 -5.2654 6.6439 -5.5366 19 1 -5.1535 5.8687 -3.2416 20 6 2.0420 -0.7238 1.2484 21 6 1.5766 -2.1819 1.2103 22 6 2.0861 -2.8417 -0.0730 23 7 1.5682 -2.1133 -1.2383 24 6 2.0409 -0.7230 -1.2483 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1309 1.4415 0.0005 29 1 1.6767 1.9566 0.8893 30 1 0.9971 1.6612 -1.8359 31 1 2.1923 5.9529 -2.1253 32 1 3.1676 5.0393 -3.1153 33 1 -0.6722 3.7141 -2.1407 34 1 -0.1020 5.3196 -1.6254 35 1 -0.0107 6.0475 -3.9940 36 1 -0.5807 4.4421 -4.5094 37 1 -2.6773 6.7863 -6.4247 38 1 3.1313 -0.6895 1.2682 39 1 1.6452 -0.2378 2.1397 40 1 0.4873 -2.2169 1.2298 41 1 1.9732 -2.7139 2.0752 42 1 1.7443 -3.8760 -0.1101 43 1 3.1758 -2.8186 -0.0852 44 1 0.5606 -2.1528 -1.2708 45 1 1.6664 -0.2186 -2.1391 46 1 3.1308 -0.7101 -1.2550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424161326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = -64.866494 kcal Electronic energy + Delta-G solvation = -23032.102858 eV Core-core repulsion = 19762.030010 eV Total energy + Delta-G solvation = -3270.072848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51200 -39.30285 -35.54023 -35.01026 -32.80194 -32.63481 -31.59948 -30.08701 -27.66819 -27.03242 -25.60456 -24.12096 -23.43099 -21.80890 -20.60462 -19.85172 -19.11192 -17.29458 -16.35943 -16.27320 -16.04440 -15.59828 -15.40285 -15.18039 -14.58063 -14.37151 -14.34294 -14.05698 -13.46375 -13.36838 -13.24304 -12.82529 -12.47265 -12.30175 -12.00497 -11.92224 -11.83042 -11.64497 -11.54462 -11.42003 -10.89973 -10.78885 -10.73819 -10.66378 -10.54533 -10.11787 -9.79651 -9.36917 -9.06438 -8.99183 -8.66365 -8.34568 -8.19634 -5.93706 -3.95955 2.79878 3.27835 3.34813 3.41072 3.43734 3.92054 4.26059 4.34522 4.42941 4.49997 4.64264 4.81645 4.87256 4.91476 5.06481 5.10603 5.14754 5.30714 5.34201 5.41736 5.48308 5.51457 5.51846 5.55894 5.62514 5.65694 5.69730 5.82179 5.84663 5.87693 5.99905 6.41135 6.47182 6.64878 6.65817 7.03011 7.08907 7.38648 7.60542 7.76293 7.81083 7.96405 8.13462 8.33357 8.48543 9.12098 9.67204 11.17169 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.003417 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.314107 B = 8192.430761 C = 8942.726709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.133 3.867 4 N -0.729 5.729 5 C 0.482 3.518 6 O -0.555 6.555 7 C 0.078 3.922 8 H 0.097 0.903 9 N -0.807 5.807 10 C -0.094 4.094 11 C 0.031 3.969 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.158 4.158 22 C 0.055 3.945 23 N -0.684 5.684 24 C 0.067 3.933 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.401 0.599 31 H 0.347 0.653 32 H 0.334 0.666 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.259 0.741 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.342 0.658 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -18.414 12.006 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C 0.008 3.992 4 N -0.382 5.382 5 C 0.268 3.732 6 O -0.433 6.433 7 C -0.038 4.038 8 H 0.115 0.885 9 N -0.335 5.335 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.198 4.198 22 C -0.075 4.075 23 N -0.312 5.312 24 C -0.063 4.063 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.237 0.763 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.161 0.839 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.562 -18.006 11.334 23.326 hybrid contribution -1.268 0.154 1.529 1.993 sum 8.294 -17.852 12.863 23.515 Atomic orbital electron populations 1.21947 0.93712 1.01864 1.02955 1.21529 0.96855 0.94959 0.97858 1.21259 0.98790 0.90538 0.88635 1.46214 1.54102 1.12681 1.25221 1.22749 0.79381 0.81511 0.89546 1.90642 1.38849 1.66127 1.47701 1.21836 0.97056 0.92165 0.92720 0.88489 1.58997 1.14365 1.14113 1.45995 1.21648 0.89144 0.99952 1.02538 1.19014 0.94930 0.96598 0.90046 1.21278 0.97961 1.39630 0.97236 0.93025 1.24991 0.98022 0.96021 0.95284 1.69974 1.36792 1.44154 1.02231 0.86654 0.85194 0.79057 0.77420 1.20727 1.21275 1.20028 1.21534 1.00884 0.95119 0.96871 1.22283 1.01510 0.96223 0.99739 1.22040 1.00471 0.97393 0.87558 1.60667 1.15736 1.13415 1.41411 1.22102 1.00629 0.87633 0.95962 0.91858 0.92333 0.92034 0.91788 0.91725 0.76288 0.83858 0.85473 0.92932 0.92904 0.94669 0.96869 0.93092 0.91578 0.91561 0.91560 0.91384 0.90771 0.90959 0.83898 0.90407 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.70 37.16 0.29 -0.90 16 2 C -0.11 -0.87 0.53 -154.43 -0.08 -0.95 16 3 C 0.13 1.41 4.57 -4.04 -0.02 1.39 16 4 N -0.73 -8.73 4.97 -60.30 -0.30 -9.03 16 5 C 0.48 7.50 7.07 -10.99 -0.08 7.42 16 6 O -0.56 -10.25 16.25 5.56 0.09 -10.16 16 7 C 0.08 1.30 3.15 -68.86 -0.22 1.08 16 8 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 9 N -0.81 -13.68 8.44 -5.65 -0.05 -13.73 16 10 C -0.09 -1.90 4.78 -26.73 -0.13 -2.02 16 11 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -0.76 4.79 -26.61 -0.13 -0.89 16 21 C -0.16 -0.98 5.72 -26.66 -0.15 -1.13 16 22 C 0.06 0.36 6.55 -3.83 -0.03 0.34 16 23 N -0.68 -5.28 6.80 -113.82 -0.77 -6.06 16 24 C 0.07 0.54 5.15 -3.83 -0.02 0.52 16 25 H 0.06 0.55 6.87 -51.93 -0.36 0.19 16 26 H 0.06 0.41 5.12 -51.93 -0.27 0.14 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.40 4.20 6.18 -40.82 -0.25 3.94 16 31 H 0.35 6.00 8.58 -39.29 -0.34 5.67 16 32 H 0.33 4.91 9.06 -39.29 -0.36 4.56 16 33 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.42 6.58 -51.93 -0.34 0.07 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.34 2.44 7.15 -39.29 -0.28 2.16 16 45 H 0.08 0.65 6.89 -51.93 -0.36 0.30 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -32.04 356.12 -9.04 -41.09 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.99 Total: 9.98 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.11 Total: -7.99 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.38 Total: -54.98 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.04 -9.04 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.779 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds