Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.50421 * 2 1 4 4 N 1.46500 * 109.47399 * 299.92133 * 3 2 1 5 5 C 1.34771 * 120.00294 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00127 * 180.02562 * 5 4 3 8 8 H 1.09002 * 109.47060 * 319.99931 * 7 5 4 9 9 N 1.46901 * 109.46921 * 199.99750 * 7 5 4 10 10 C 1.53002 * 109.47419 * 80.00012 * 7 5 4 11 11 C 1.52997 * 109.47469 * 184.99997 * 10 7 5 12 12 C 1.50699 * 109.47339 * 179.97438 * 11 10 7 13 13 H 1.07999 * 119.99742 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00088 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47114 * 89.99384 * 16 14 12 18 18 H 1.48495 * 109.46938 * 209.99970 * 16 14 12 19 19 H 1.48503 * 109.46732 * 329.99688 * 16 14 12 20 20 C 1.53118 * 109.53376 * 120.10317 * 2 1 3 21 21 C 1.53111 * 109.16335 * 62.30665 * 20 2 1 22 22 C 1.53034 * 109.28313 * 57.65267 * 21 20 2 23 23 N 1.46851 * 109.52139 * 300.82060 * 22 21 20 24 24 C 1.46849 * 111.19390 * 61.74260 * 23 22 21 25 25 H 1.09000 * 109.47029 * 59.99643 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46537 * 299.99810 * 1 2 3 28 28 H 1.09002 * 109.46909 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47214 * 59.92216 * 3 2 1 30 30 H 0.97005 * 119.99560 * 0.02562 * 4 3 2 31 31 H 1.00898 * 111.00245 * 299.99784 * 9 7 5 32 32 H 1.00904 * 111.00313 * 63.95601 * 9 7 5 33 33 H 1.09008 * 109.46873 * 305.00091 * 10 7 5 34 34 H 1.08997 * 109.47047 * 64.99780 * 10 7 5 35 35 H 1.08997 * 109.47151 * 300.00410 * 11 10 7 36 36 H 1.09006 * 109.46918 * 59.99351 * 11 10 7 37 37 H 0.96998 * 120.00384 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.51634 * 182.20868 * 20 2 1 39 39 H 1.08997 * 109.52139 * 302.39053 * 20 2 1 40 40 H 1.09007 * 109.50262 * 297.70910 * 21 20 2 41 41 H 1.09002 * 109.53927 * 177.61674 * 21 20 2 42 42 H 1.08997 * 109.46572 * 180.80899 * 22 21 20 43 43 H 1.09000 * 109.45483 * 60.83033 * 22 21 20 44 44 H 1.00896 * 111.00213 * 297.64839 * 23 22 21 45 45 H 1.09002 * 109.45686 * 178.23907 * 24 23 22 46 46 H 1.08992 * 109.45793 * 58.26956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 7 1.5545 2.1326 -1.1971 5 6 1.8815 3.4224 -1.4108 6 8 2.5781 4.0118 -0.6119 7 6 1.3807 4.1327 -2.6419 8 1 1.4278 3.4568 -3.4958 9 7 2.2192 5.3104 -2.9028 10 6 -0.0670 4.5761 -2.4216 11 6 -0.6159 5.1857 -3.7131 12 6 -2.0420 5.6218 -3.4962 13 1 -2.5101 5.4782 -2.5336 14 6 -2.7494 6.2032 -4.5270 15 7 -2.1795 6.3776 -5.6994 16 14 -4.5170 6.7444 -4.2580 17 1 -4.5370 8.1509 -3.7819 18 1 -5.2654 6.6439 -5.5366 19 1 -5.1535 5.8687 -3.2416 20 6 2.0420 -0.7238 1.2484 21 6 1.5766 -2.1819 1.2103 22 6 2.0861 -2.8417 -0.0730 23 7 1.5682 -2.1133 -1.2383 24 6 2.0409 -0.7230 -1.2483 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1309 1.4415 0.0005 29 1 1.6767 1.9566 0.8893 30 1 0.9971 1.6612 -1.8359 31 1 2.1923 5.9529 -2.1253 32 1 3.1676 5.0393 -3.1153 33 1 -0.6722 3.7141 -2.1407 34 1 -0.1020 5.3196 -1.6254 35 1 -0.0107 6.0475 -3.9940 36 1 -0.5807 4.4421 -4.5094 37 1 -2.6773 6.7863 -6.4247 38 1 3.1313 -0.6895 1.2682 39 1 1.6452 -0.2378 2.1397 40 1 0.4873 -2.2169 1.2298 41 1 1.9732 -2.7139 2.0752 42 1 1.7443 -3.8760 -0.1101 43 1 3.1758 -2.8186 -0.0852 44 1 0.5606 -2.1528 -1.2708 45 1 1.6664 -0.2186 -2.1391 46 1 3.1308 -0.7101 -1.2550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424161326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -89.521423 kcal Electronic energy + Delta-G solvation = -23033.171976 eV Core-core repulsion = 19762.030010 eV Total energy + Delta-G solvation = -3271.141966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42778 -40.32190 -36.87956 -36.20138 -34.80233 -33.43719 -32.23685 -31.91326 -28.70514 -28.03933 -26.98816 -25.04826 -24.66977 -22.68721 -22.09543 -21.18824 -19.81566 -18.70546 -18.07530 -17.41639 -16.97827 -16.74013 -16.46127 -16.38348 -15.83479 -15.53940 -15.23617 -15.16665 -14.82029 -14.28068 -14.14201 -14.02429 -13.81771 -13.43981 -13.40561 -13.21210 -12.80526 -12.56099 -12.50973 -12.45658 -12.25628 -12.23309 -12.07385 -11.76788 -11.65201 -11.39553 -11.33987 -11.23875 -10.98760 -10.48371 -10.14848 -9.61625 -9.26150 -8.13160 -6.23472 1.42172 1.43463 1.51469 1.54378 2.18440 2.45189 3.19874 3.31514 3.58091 3.61040 3.69180 3.75134 3.86929 4.08351 4.11612 4.21954 4.28212 4.32555 4.47310 4.52490 4.58278 4.68379 4.76000 4.78320 4.84404 4.94557 4.95445 4.99964 5.05434 5.08136 5.21737 5.24014 5.25904 5.39261 5.40970 5.57871 5.85356 5.99543 6.06837 6.10495 6.31118 6.43924 6.48442 6.53866 6.95339 7.14031 7.44664 8.98033 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.003417 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.314107 B = 8192.430761 C = 8942.726709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C 0.134 3.866 4 N -0.712 5.712 5 C 0.488 3.512 6 O -0.584 6.584 7 C 0.085 3.915 8 H 0.110 0.890 9 N -0.819 5.819 10 C -0.081 4.081 11 C 0.039 3.961 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.002 3.998 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.106 4.106 21 C -0.152 4.152 22 C 0.055 3.945 23 N -0.690 5.690 24 C 0.070 3.930 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.411 0.589 31 H 0.345 0.655 32 H 0.346 0.654 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.005 0.995 36 H -0.005 1.005 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.346 0.654 45 H 0.074 0.926 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 -19.942 12.951 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C 0.010 3.990 4 N -0.364 5.364 5 C 0.273 3.727 6 O -0.465 6.465 7 C -0.031 4.031 8 H 0.128 0.872 9 N -0.348 5.348 10 C -0.119 4.119 11 C 0.002 3.998 12 C -0.582 4.582 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.144 4.144 21 C -0.191 4.191 22 C -0.075 4.075 23 N -0.319 5.319 24 C -0.060 4.060 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.249 0.751 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.093 0.907 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.793 -19.581 12.284 24.732 hybrid contribution -0.994 0.593 1.224 1.685 sum 7.799 -18.988 13.509 24.574 Atomic orbital electron populations 1.21944 0.93496 1.02639 1.02327 1.21424 0.96838 0.93146 0.98530 1.21341 0.98587 0.91827 0.87283 1.46089 1.53085 1.11594 1.25669 1.22344 0.79279 0.82404 0.88639 1.90635 1.40395 1.67078 1.48377 1.21641 0.95021 0.92456 0.93966 0.87208 1.58973 1.15382 1.14421 1.46026 1.21379 0.91509 0.99838 0.99187 1.18824 0.93796 0.95135 0.92020 1.21734 0.99349 1.39665 0.97446 0.92638 1.25898 1.02700 0.96039 0.94962 1.70104 1.38700 1.45006 1.03167 0.85542 0.79637 0.78722 0.77694 1.20260 1.20728 1.18737 1.21541 1.00885 0.95794 0.96184 1.22231 1.01593 0.95308 0.99942 1.22077 1.00306 0.97798 0.87273 1.60667 1.16122 1.12964 1.42187 1.22034 1.00277 0.88051 0.95681 0.92458 0.90920 0.92639 0.92151 0.92856 0.75134 0.84194 0.84037 0.91458 0.94049 0.97671 0.98675 0.92930 0.91614 0.91663 0.91343 0.90358 0.89775 0.91282 0.83436 0.90721 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 7.70 71.98 0.55 -1.56 16 2 C -0.10 -1.40 0.53 -52.13 -0.03 -1.43 16 3 C 0.13 2.71 4.57 86.38 0.39 3.10 16 4 N -0.71 -16.24 4.97 -463.07 -2.30 -18.54 16 5 C 0.49 14.80 7.07 87.66 0.62 15.42 16 6 O -0.58 -21.32 16.25 -3.03 -0.05 -21.37 16 7 C 0.08 2.79 3.15 44.17 0.14 2.93 16 8 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 9 N -0.82 -27.86 8.44 -171.79 -1.45 -29.31 16 10 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 11 C 0.04 2.04 4.86 29.85 0.15 2.19 16 12 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 13 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 16 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 20 C -0.11 -1.34 4.79 30.67 0.15 -1.19 16 21 C -0.15 -1.53 5.72 30.64 0.18 -1.35 16 22 C 0.05 0.61 6.55 86.32 0.57 1.17 16 23 N -0.69 -9.36 6.80 -514.00 -3.49 -12.85 16 24 C 0.07 1.02 5.15 86.33 0.44 1.47 16 25 H 0.06 0.90 6.87 -2.39 -0.02 0.88 16 26 H 0.07 0.85 5.12 -2.39 -0.01 0.84 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.41 7.95 6.18 -92.70 -0.57 7.38 16 31 H 0.34 12.05 8.58 -89.70 -0.77 11.28 16 32 H 0.35 10.11 9.06 -89.69 -0.81 9.30 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 36 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.68 6.58 -2.38 -0.02 0.67 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.35 4.19 7.15 -89.70 -0.64 3.55 16 45 H 0.07 1.14 6.89 -2.39 -0.02 1.12 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.30 356.12 -2.78 -71.08 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -1.80 Total: 33.35 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.00 Total: -12.34 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -6.96 Total: -117.08 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.30 -2.78 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.442 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds