Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.49964 * 2 1 4 4 N 1.46506 * 109.47035 * 299.92099 * 3 2 1 5 5 C 1.34777 * 119.99873 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99754 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00137 * 180.02562 * 5 4 3 8 8 H 1.09004 * 109.46778 * 40.00224 * 7 5 4 9 9 N 1.46899 * 109.47352 * 160.00210 * 7 5 4 10 10 C 1.53002 * 109.47094 * 280.00278 * 7 5 4 11 11 C 1.53002 * 109.46951 * 174.99770 * 10 7 5 12 12 C 1.50704 * 109.46904 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00325 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99731 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00138 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99803 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47408 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47304 * 120.00038 * 16 14 12 19 19 H 1.48501 * 109.47318 * 240.00123 * 16 14 12 20 20 C 1.53113 * 109.53777 * 120.09585 * 2 1 3 21 21 C 1.53122 * 109.15801 * 62.30906 * 20 2 1 22 22 C 1.53036 * 109.27894 * 57.65394 * 21 20 2 23 23 N 1.46849 * 109.52270 * 300.81632 * 22 21 20 24 24 C 1.46853 * 111.19471 * 61.74825 * 23 22 21 25 25 H 1.08991 * 109.47445 * 59.99974 * 1 2 3 26 26 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47131 * 299.99706 * 1 2 3 28 28 H 1.09004 * 109.46930 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47312 * 59.92273 * 3 2 1 30 30 H 0.96999 * 120.00080 * 0.02562 * 4 3 2 31 31 H 1.00903 * 110.99731 * 296.04790 * 9 7 5 32 32 H 1.00901 * 111.00076 * 60.00183 * 9 7 5 33 33 H 1.08994 * 109.47168 * 294.99678 * 10 7 5 34 34 H 1.09006 * 109.47102 * 55.00073 * 10 7 5 35 35 H 1.08994 * 109.47109 * 299.99944 * 11 10 7 36 36 H 1.08998 * 109.47178 * 60.00013 * 11 10 7 37 37 H 0.97002 * 119.99975 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.52065 * 182.20853 * 20 2 1 39 39 H 1.08999 * 109.52641 * 302.40592 * 20 2 1 40 40 H 1.08997 * 109.50595 * 297.70937 * 21 20 2 41 41 H 1.08999 * 109.53629 * 177.61391 * 21 20 2 42 42 H 1.09002 * 109.46167 * 180.80209 * 22 21 20 43 43 H 1.09003 * 109.45748 * 60.82971 * 22 21 20 44 44 H 1.00897 * 110.99983 * 297.64905 * 23 22 21 45 45 H 1.08997 * 109.46242 * 178.24264 * 24 23 22 46 46 H 1.08995 * 109.45885 * 58.26421 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5543 2.1326 -1.1972 5 6 1.8804 3.4228 -1.4104 6 8 2.5769 4.0122 -0.6113 7 6 1.3796 4.1331 -2.6415 8 1 0.3481 3.8392 -2.8361 9 7 1.4432 5.5852 -2.4290 10 6 2.2526 3.7542 -3.8395 11 6 1.6709 4.3752 -5.1111 12 6 2.5312 4.0026 -6.2910 13 1 3.4051 3.3843 -6.1483 14 6 2.2019 4.4501 -7.5528 15 7 1.1369 5.2018 -7.7269 16 14 3.2678 3.9876 -9.0155 17 1 4.3979 3.1407 -8.5564 18 1 2.4535 3.2346 -10.0030 19 1 3.7997 5.2204 -9.6499 20 6 2.0421 -0.7236 1.2484 21 6 1.5767 -2.1819 1.2104 22 6 2.0863 -2.8416 -0.0730 23 7 1.5683 -2.1133 -1.2382 24 6 2.0410 -0.7229 -1.2484 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1308 1.4417 0.0005 29 1 1.6766 1.9567 0.8893 30 1 0.9969 1.6613 -1.8360 31 1 0.8249 5.8691 -1.6838 32 1 2.3899 5.8828 -2.2464 33 1 3.2650 4.1267 -3.6835 34 1 2.2764 2.6693 -3.9431 35 1 0.6585 4.0028 -5.2670 36 1 1.6470 5.4600 -5.0075 37 1 0.9055 5.5169 -8.6146 38 1 3.1314 -0.6893 1.2682 39 1 1.6451 -0.2377 2.1397 40 1 0.4875 -2.2169 1.2299 41 1 1.9733 -2.7137 2.0752 42 1 1.7446 -3.8760 -0.1099 43 1 3.1760 -2.8184 -0.0852 44 1 0.5606 -2.1529 -1.2707 45 1 1.6663 -0.2185 -2.1390 46 1 3.1308 -0.7100 -1.2550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424161328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -64.578125 kcal Electronic energy + Delta-G solvation = -23067.076380 eV Core-core repulsion = 19797.016036 eV Total energy + Delta-G solvation = -3270.060344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50455 -39.29650 -35.53501 -35.00489 -32.79215 -32.62829 -31.58309 -30.07939 -27.69524 -27.03264 -25.58946 -24.09643 -23.41952 -21.79561 -20.59728 -19.85130 -19.11144 -17.28717 -16.35649 -16.25702 -15.96743 -15.71938 -15.37342 -15.12081 -14.51687 -14.49039 -14.27474 -14.03628 -13.49706 -13.39164 -13.20288 -12.81372 -12.46073 -12.30263 -12.01725 -11.93480 -11.83218 -11.62645 -11.52274 -11.42239 -10.89938 -10.77717 -10.73464 -10.65407 -10.51273 -10.11194 -9.79014 -9.36230 -9.06143 -8.96623 -8.62175 -8.34144 -8.19318 -5.92630 -3.94594 2.79813 3.27748 3.35236 3.42844 3.46969 3.95163 4.26405 4.35111 4.42512 4.51630 4.65500 4.82122 4.87215 4.91291 5.06607 5.13328 5.15758 5.28452 5.33749 5.43089 5.47988 5.52605 5.52969 5.54773 5.63123 5.64628 5.71627 5.80508 5.84717 5.88552 5.97738 6.41912 6.47699 6.66800 6.69704 7.07640 7.10050 7.38530 7.60435 7.77680 7.80926 7.97506 8.14290 8.33278 8.49905 9.13649 9.68674 11.18306 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.003640 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.161352 B = 7691.401129 C = 8802.373330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.133 3.867 4 N -0.729 5.729 5 C 0.482 3.518 6 O -0.555 6.555 7 C 0.078 3.922 8 H 0.097 0.903 9 N -0.807 5.807 10 C -0.095 4.095 11 C 0.031 3.969 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.106 4.106 21 C -0.158 4.158 22 C 0.055 3.945 23 N -0.683 5.683 24 C 0.066 3.934 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.401 0.599 31 H 0.333 0.667 32 H 0.348 0.652 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.341 0.659 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -14.372 19.019 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C 0.008 3.992 4 N -0.382 5.382 5 C 0.268 3.732 6 O -0.433 6.433 7 C -0.038 4.038 8 H 0.114 0.886 9 N -0.335 5.335 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.560 4.560 13 H 0.071 0.929 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.144 4.144 21 C -0.197 4.197 22 C -0.075 4.075 23 N -0.311 5.311 24 C -0.064 4.064 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.237 0.763 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.160 0.840 45 H 0.098 0.902 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.686 -14.020 18.253 23.078 hybrid contribution 0.086 -0.331 0.681 0.762 sum -1.601 -14.352 18.934 23.812 Atomic orbital electron populations 1.21935 0.93971 1.01868 1.02555 1.21533 0.96648 0.95030 0.98009 1.21262 0.99101 0.90485 0.88373 1.46214 1.54269 1.12656 1.25085 1.22752 0.79730 0.81796 0.88912 1.90643 1.38386 1.66462 1.47827 1.21835 1.01786 0.88197 0.91948 0.88553 1.59000 1.14287 1.10013 1.50171 1.21654 0.97773 0.99792 0.94095 1.19020 0.95398 0.97398 0.88803 1.21320 1.10770 1.31426 0.92444 0.92919 1.24991 0.95226 0.95255 0.98885 1.69984 1.25546 1.35379 1.22298 0.86598 0.80605 0.78215 0.82935 1.19835 1.21097 1.21083 1.21536 1.01026 0.95114 0.96737 1.22283 1.01371 0.96234 0.99816 1.22049 1.00590 0.97377 0.87493 1.60644 1.15557 1.13497 1.41388 1.22126 1.00900 0.87522 0.95897 0.92071 0.92291 0.92209 0.91650 0.91857 0.76290 0.85520 0.83836 0.92864 0.92836 0.96893 0.94692 0.93174 0.91479 0.91666 0.91668 0.91398 0.90780 0.90882 0.84046 0.90190 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.70 37.16 0.29 -0.77 16 2 C -0.11 -0.87 0.53 -154.43 -0.08 -0.96 16 3 C 0.13 1.41 4.57 -4.04 -0.02 1.39 16 4 N -0.73 -8.73 4.97 -60.29 -0.30 -9.02 16 5 C 0.48 7.50 7.07 -10.99 -0.08 7.42 16 6 O -0.56 -10.25 16.25 5.55 0.09 -10.15 16 7 C 0.08 1.30 3.15 -68.87 -0.22 1.09 16 8 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 9 N -0.81 -13.68 8.44 -5.65 -0.05 -13.73 16 10 C -0.09 -1.91 4.78 -26.73 -0.13 -2.03 16 11 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.11 -0.76 4.79 -26.61 -0.13 -0.89 16 21 C -0.16 -0.98 5.73 -26.65 -0.15 -1.13 16 22 C 0.05 0.38 6.55 -3.83 -0.03 0.36 16 23 N -0.68 -5.68 6.80 -113.81 -0.77 -6.45 16 24 C 0.07 0.58 5.15 -3.83 -0.02 0.56 16 25 H 0.06 0.46 6.87 -51.93 -0.36 0.10 16 26 H 0.06 0.37 5.12 -51.93 -0.27 0.11 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.40 4.19 6.18 -40.82 -0.25 3.94 16 31 H 0.33 4.90 9.06 -39.29 -0.36 4.55 16 32 H 0.35 6.01 8.58 -39.29 -0.34 5.67 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.39 6.58 -51.93 -0.34 0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.34 2.51 7.15 -39.29 -0.28 2.23 16 45 H 0.08 0.77 6.89 -51.93 -0.36 0.41 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -32.19 356.12 -9.04 -41.24 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.99 Total: 10.01 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.11 Total: -7.82 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.38 Total: -55.43 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.19 -9.04 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424161328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.343 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds