Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 N 1.46497 * 109.47081 * 295.00160 * 3 2 1 7 7 C 1.34777 * 120.00376 * 155.00022 * 6 3 2 8 8 O 1.21279 * 119.99824 * 359.97438 * 7 6 3 9 9 C 1.50699 * 120.00179 * 179.97438 * 7 6 3 10 10 N 1.46897 * 109.47296 * 179.97438 * 9 7 6 11 11 C 1.46959 * 110.99985 * 293.79788 * 10 9 7 12 12 C 1.53054 * 109.36577 * 176.81162 * 11 10 9 13 13 N 1.46949 * 109.36382 * 58.40300 * 12 11 10 14 14 C 1.46897 * 111.00022 * 176.81298 * 13 12 11 15 15 C 1.50695 * 109.46935 * 293.79881 * 14 13 12 16 16 H 1.07995 * 120.00485 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99777 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99918 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00358 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47330 * 89.99386 * 19 17 15 21 21 H 1.48497 * 109.47198 * 210.00055 * 19 17 15 22 22 H 1.48510 * 109.46754 * 329.99628 * 19 17 15 23 23 C 1.46958 * 110.88252 * 300.67927 * 13 12 11 24 24 C 1.46958 * 111.00131 * 170.00193 * 10 9 7 25 25 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 26 26 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 28 28 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 29 29 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 32 32 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 33 33 H 0.97006 * 119.99921 * 334.99446 * 6 3 2 34 34 H 1.08995 * 109.47183 * 300.00111 * 9 7 6 35 35 H 1.09009 * 109.47183 * 59.99391 * 9 7 6 36 36 H 1.09005 * 109.48860 * 296.78097 * 11 10 9 37 37 H 1.09003 * 109.49019 * 56.84210 * 11 10 9 38 38 H 1.09003 * 109.48365 * 298.43546 * 12 11 10 39 39 H 1.09001 * 109.48413 * 178.37216 * 12 11 10 40 40 H 1.09001 * 109.47320 * 53.79917 * 14 13 12 41 41 H 1.09004 * 109.47397 * 173.79761 * 14 13 12 42 42 H 0.96996 * 119.99581 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.49205 * 299.35438 * 23 13 12 44 44 H 1.08996 * 109.51350 * 179.30063 * 23 13 12 45 45 H 1.09002 * 109.48637 * 303.15049 * 24 10 9 46 46 H 1.08999 * 109.49064 * 63.21636 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 7 1.6526 2.0974 -1.2518 7 6 1.5259 3.4383 -1.2996 8 8 1.7322 4.1027 -0.3062 9 6 1.1278 4.1121 -2.5875 10 7 1.0587 5.5646 -2.3792 11 6 -0.0297 5.9130 -1.4552 12 6 -0.0177 7.4226 -1.2031 13 7 -0.1690 8.1313 -2.4814 14 6 -0.2381 9.5838 -2.2732 15 6 -1.5018 9.9246 -1.5263 16 1 -2.1855 9.1407 -1.2358 17 6 -1.7852 11.2373 -1.2138 18 7 -2.8883 11.5348 -0.5624 19 14 -0.6031 12.5933 -1.7169 20 1 -0.9702 13.0950 -3.0655 21 1 -0.6804 13.7062 -0.7367 22 1 0.7813 12.0567 -1.7483 23 6 0.9193 7.7830 -3.4055 24 6 0.9073 6.2734 -3.6576 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.9995 0.9050 -0.7160 31 1 3.8532 0.9568 1.0572 32 1 3.9284 2.4718 0.1253 33 1 1.4872 1.5660 -2.0463 34 1 1.8666 3.8898 -3.3573 35 1 0.1517 3.7439 -2.9036 36 1 -0.9852 5.6251 -1.8937 37 1 0.1114 5.3856 -0.5117 38 1 0.9272 7.7063 -0.7395 39 1 -0.8420 7.6871 -0.5407 40 1 0.6256 9.9092 -1.6933 41 1 -0.2390 10.0897 -3.2387 42 1 -3.0875 12.4582 -0.3423 43 1 1.8749 8.0708 -2.9671 44 1 0.7786 8.3103 -4.3490 45 1 1.7317 6.0088 -4.3199 46 1 -0.0375 5.9896 -4.1212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074161790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -28.085373 kcal Electronic energy + Delta-G solvation = -22966.999126 eV Core-core repulsion = 19698.521227 eV Total energy + Delta-G solvation = -3268.477899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12961 -38.47357 -36.61216 -34.88467 -32.65275 -32.32657 -30.41829 -30.28700 -29.14331 -26.84209 -24.38784 -23.69800 -23.09116 -21.31598 -20.94055 -20.54101 -19.18528 -17.16099 -16.71330 -16.57298 -15.63660 -15.50292 -14.60357 -14.51509 -14.33904 -14.22063 -14.17071 -13.81982 -13.71600 -13.47384 -13.22892 -12.93005 -12.57884 -12.26670 -12.12901 -12.01580 -11.78831 -11.59625 -11.41780 -11.38096 -11.01804 -10.88811 -10.73902 -10.56171 -10.39798 -10.08203 -9.79850 -9.57984 -9.21563 -9.18671 -8.51879 -8.12603 -7.28938 -6.00516 -3.97385 2.64570 2.93990 3.32490 3.39755 3.43156 4.12249 4.35684 4.46867 4.66230 4.71508 4.75360 4.86347 5.09865 5.11998 5.20004 5.25049 5.28875 5.31860 5.37645 5.44446 5.56314 5.57005 5.59085 5.71157 5.80063 5.84709 5.88193 5.95222 5.98827 6.13435 6.19791 6.35060 6.40965 6.60322 6.77052 6.91402 7.04382 7.08998 7.30265 7.43369 7.65656 7.98027 8.12509 8.23853 8.71747 9.07880 9.61567 11.12675 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.003145 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.079270 B = 8899.761367 C = 9197.337152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.513 6.513 9 C 0.037 3.963 10 N -0.523 5.523 11 C 0.055 3.945 12 C 0.070 3.930 13 N -0.531 5.531 14 C 0.162 3.838 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.054 3.946 24 C 0.062 3.938 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.396 0.604 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.091 0.909 40 H -0.011 1.011 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.721 -24.313 -3.939 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.386 5.386 7 C 0.299 3.701 8 O -0.387 6.387 9 C -0.095 4.095 10 N -0.248 5.248 11 C -0.072 4.072 12 C -0.058 4.058 13 N -0.256 5.256 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.075 4.075 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.007 0.993 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.763 -23.635 -3.116 26.157 hybrid contribution 0.502 0.536 -0.705 1.018 sum 11.266 -23.098 -3.822 25.982 Atomic orbital electron populations 1.21779 0.95233 1.01639 1.02462 1.21829 0.96625 0.95481 1.02884 1.20958 0.94822 0.92855 0.87719 0.89403 1.22180 0.95496 1.02808 1.01723 1.46103 1.72028 1.07035 1.13455 1.20660 0.76892 0.81782 0.90740 1.90707 1.48030 1.63557 1.36420 1.21928 1.01636 0.90591 0.95346 1.61901 1.47082 1.03398 1.12438 1.22412 0.90510 0.97593 0.96732 1.21984 1.00995 0.90831 0.92017 1.62135 1.41803 1.10017 1.11614 1.20149 0.97004 0.83179 0.96067 1.21038 1.04733 0.93842 1.34970 0.90196 1.24903 0.95126 0.98467 0.94892 1.69900 1.24637 1.18915 1.40631 0.86854 0.82215 0.82070 0.78597 1.20205 1.21238 1.19218 1.22093 0.93870 0.93768 0.97740 1.22174 0.99893 0.94635 0.89874 0.92526 0.92618 0.92445 0.91530 0.90501 0.92661 0.91814 0.91849 0.76983 0.88298 0.92153 0.94799 0.89286 0.95099 0.89100 0.99293 0.95880 0.92719 0.95014 0.90915 0.91086 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.80 37.16 0.36 -0.60 16 2 C -0.13 -0.74 5.47 -26.74 -0.15 -0.89 16 3 C 0.14 1.16 2.57 -67.94 -0.17 0.98 16 4 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 5 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 6 N -0.73 -6.15 4.53 -53.81 -0.24 -6.39 16 7 C 0.51 6.28 7.49 -10.99 -0.08 6.20 16 8 O -0.51 -8.62 14.00 5.56 0.08 -8.54 16 9 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16 10 N -0.52 -8.08 4.45 -235.90 -1.05 -9.13 16 11 C 0.05 0.98 5.26 -3.76 -0.02 0.96 16 12 C 0.07 1.49 5.43 -3.77 -0.02 1.47 16 13 N -0.53 -11.73 4.70 -235.91 -1.11 -12.84 16 14 C 0.16 4.11 3.79 -4.98 -0.02 4.09 16 15 C -0.51 -14.82 9.03 -34.44 -0.31 -15.13 16 16 H 0.08 2.53 7.38 -52.49 -0.39 2.14 16 17 C 0.07 2.00 5.47 -17.81 -0.10 1.90 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 19 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 23 C 0.05 0.98 5.61 -3.76 -0.02 0.96 16 24 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 25 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 2.18 8.60 -40.82 -0.35 1.83 16 34 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.06 0.60 8.12 -51.92 -0.42 0.18 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.62 5.85 -51.93 -0.30 1.32 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.11 6.79 -51.93 -0.35 1.76 16 40 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 41 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -34.06 359.06 -9.48 -43.54 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.44 Total: -2.31 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.22 Total: 0.26 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.63 Total: -55.73 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.06 -9.48 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074161790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.451 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds