Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.09000 * 109.46317 * 304.99944 * 3 2 1 5 5 C 1.53001 * 109.47243 * 185.00047 * 3 2 1 6 6 N 1.46494 * 109.47057 * 64.99789 * 3 2 1 7 7 C 1.34784 * 119.99635 * 205.00313 * 6 3 2 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99961 * 180.02562 * 7 6 3 10 10 N 1.46895 * 109.47051 * 180.02562 * 9 7 6 11 11 C 1.46957 * 110.99682 * 293.79525 * 10 9 7 12 12 C 1.53051 * 109.36505 * 176.81807 * 11 10 9 13 13 N 1.46953 * 109.36600 * 58.39965 * 12 11 10 14 14 C 1.46904 * 110.99926 * 176.81835 * 13 12 11 15 15 C 1.50707 * 109.46682 * 293.79724 * 14 13 12 16 16 H 1.07998 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00247 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47184 * 60.00052 * 19 17 15 21 21 H 1.48505 * 109.47059 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46829 * 299.99602 * 19 17 15 23 23 C 1.46957 * 110.88061 * 300.68126 * 13 12 11 24 24 C 1.46960 * 110.99672 * 170.00366 * 10 9 7 25 25 H 1.08998 * 109.47016 * 60.00424 * 1 2 3 26 26 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46822 * 299.99818 * 1 2 3 28 28 H 1.08999 * 109.47324 * 239.99385 * 2 1 3 29 29 H 1.09010 * 109.46715 * 119.99833 * 2 1 3 30 30 H 1.08991 * 109.46933 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46920 * 299.99865 * 5 3 2 32 32 H 1.08996 * 109.46997 * 59.99455 * 5 3 2 33 33 H 0.96995 * 120.00292 * 25.27746 * 6 3 2 34 34 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 35 35 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 36 36 H 1.09008 * 109.49131 * 296.78159 * 11 10 9 37 37 H 1.09000 * 109.48929 * 56.84798 * 11 10 9 38 38 H 1.09007 * 109.48687 * 298.43110 * 12 11 10 39 39 H 1.08998 * 109.49358 * 178.37225 * 12 11 10 40 40 H 1.08992 * 109.47269 * 53.79513 * 14 13 12 41 41 H 1.08999 * 109.47030 * 173.80026 * 14 13 12 42 42 H 0.96996 * 120.00049 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.48792 * 299.35526 * 23 13 12 44 44 H 1.08997 * 109.50656 * 179.30207 * 23 13 12 45 45 H 1.09000 * 109.48639 * 303.14348 * 24 10 9 46 46 H 1.08992 * 109.49731 * 63.21682 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 1.5256 3.4385 1.2994 8 8 1.7328 4.1029 0.3062 9 6 1.1275 4.1124 2.5872 10 7 1.0583 5.5648 2.3787 11 6 2.3889 6.1200 2.0943 12 6 2.2629 7.6177 1.8056 13 7 1.6524 8.2873 2.9626 14 6 1.5832 9.7398 2.7541 15 6 2.9784 10.3079 2.7102 16 1 3.8311 9.6552 2.8252 17 6 3.1661 11.6610 2.5232 18 7 2.1277 12.4557 2.3827 19 14 4.8955 12.3651 2.4681 20 1 5.6489 11.7406 1.3511 21 1 4.8256 13.8335 2.2575 22 1 5.5867 12.0810 3.7514 23 6 0.3218 7.7321 3.2470 24 6 0.4479 6.2344 3.5358 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.9281 2.4719 -0.1262 31 1 3.9995 0.9053 0.7161 32 1 3.8532 0.9569 -1.0570 33 1 1.4910 1.5665 2.0472 34 1 0.1515 3.7441 2.9033 35 1 1.8664 3.8902 3.3571 36 1 3.0379 5.9693 2.9570 37 1 2.8149 5.6169 1.2262 38 1 1.6360 7.7671 0.9264 39 1 3.2520 8.0374 1.6227 40 1 1.0764 9.9479 1.8119 41 1 1.0297 10.1984 3.5735 42 1 2.2598 13.4077 2.2515 43 1 -0.3271 7.8828 2.3843 44 1 -0.1045 8.2352 4.1149 45 1 -0.5414 5.8148 3.7186 46 1 1.0747 6.0851 4.4149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074161793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -32.431138 kcal Electronic energy + Delta-G solvation = -22925.594022 eV Core-core repulsion = 19656.927677 eV Total energy + Delta-G solvation = -3268.666346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10652 -38.39019 -36.58279 -34.77738 -32.65908 -32.34639 -30.33412 -30.26753 -28.83220 -26.45843 -24.38774 -23.73219 -22.98327 -21.48139 -21.07995 -20.52983 -19.10252 -17.11710 -16.58453 -16.23352 -15.63436 -15.43084 -14.60920 -14.46526 -14.35530 -14.16750 -14.14593 -13.86748 -13.69210 -13.41998 -13.07672 -12.86396 -12.60316 -12.10398 -11.98819 -11.94087 -11.68476 -11.50571 -11.43940 -11.11241 -11.01577 -10.80914 -10.66939 -10.60313 -10.39887 -10.22715 -9.82272 -9.45930 -9.19234 -9.12710 -8.37720 -8.07772 -7.14419 -5.96809 -3.97955 2.66253 2.95743 3.37768 3.41122 3.44382 4.16808 4.35898 4.47518 4.65634 4.71760 4.77463 5.04412 5.11447 5.14903 5.22117 5.25605 5.29492 5.38539 5.44157 5.45742 5.56695 5.57800 5.63056 5.79917 5.80804 5.87017 5.91387 5.99880 6.00962 6.22230 6.27922 6.40062 6.50491 6.69576 6.84653 7.13943 7.24104 7.42490 7.45671 7.46576 7.86280 8.16164 8.25543 8.28771 8.62842 9.09328 9.65863 11.14147 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.003137 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.214914 B = 8923.478476 C = 9561.321529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.732 5.732 7 C 0.513 3.487 8 O -0.513 6.513 9 C 0.036 3.964 10 N -0.522 5.522 11 C 0.055 3.945 12 C 0.071 3.929 13 N -0.540 5.540 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.057 3.943 24 C 0.062 3.938 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.030 0.970 39 H 0.085 0.915 40 H -0.008 1.008 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 -26.312 -0.740 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.387 5.387 7 C 0.299 3.701 8 O -0.387 6.387 9 C -0.095 4.095 10 N -0.247 5.247 11 C -0.072 4.072 12 C -0.058 4.058 13 N -0.265 5.265 14 C 0.069 3.931 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.010 0.990 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.702 -25.591 -1.513 25.777 hybrid contribution 0.772 0.190 0.407 0.893 sum -1.931 -25.401 -1.106 25.498 Atomic orbital electron populations 1.21774 0.95286 1.01569 1.02416 1.21832 0.96586 0.95519 1.02897 1.20957 0.94818 0.92826 0.87744 0.89403 1.22187 0.95488 1.02843 1.01773 1.46106 1.72107 1.07091 1.13353 1.20677 0.76770 0.81803 0.90823 1.90706 1.48049 1.63558 1.36387 1.21930 1.02365 0.91005 0.94212 1.61899 1.23826 1.00311 1.38707 1.22412 0.87930 0.96478 1.00420 1.21943 1.00813 0.91014 0.92030 1.62311 1.18511 1.07410 1.38316 1.19690 0.97519 0.80433 0.95492 1.21126 0.92346 0.92353 1.48673 0.92007 1.24988 0.97048 0.97069 0.95526 1.69952 1.29484 1.04429 1.50040 0.86566 0.84592 0.77695 0.78578 1.20260 1.21382 1.20226 1.22041 0.92324 0.92644 1.00202 1.22195 0.98312 0.95157 0.90919 0.92509 0.92664 0.92504 0.90515 0.91517 0.91853 0.92622 0.91788 0.76994 0.88312 0.92231 0.95026 0.89480 0.95155 0.89700 0.99048 0.95279 0.92915 0.95063 0.90954 0.91178 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.80 37.16 0.36 -0.54 16 2 C -0.13 -0.74 5.47 -26.73 -0.15 -0.88 16 3 C 0.14 1.17 2.57 -67.93 -0.17 1.00 16 4 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 5 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 6 N -0.73 -6.25 4.53 -53.81 -0.24 -6.50 16 7 C 0.51 6.39 7.50 -10.98 -0.08 6.31 16 8 O -0.51 -8.73 14.00 5.56 0.08 -8.65 16 9 C 0.04 0.42 5.45 -4.98 -0.03 0.39 16 10 N -0.52 -8.32 4.45 -235.91 -1.05 -9.37 16 11 C 0.06 0.99 5.26 -3.77 -0.02 0.97 16 12 C 0.07 1.53 5.43 -3.77 -0.02 1.51 16 13 N -0.54 -12.36 4.70 -235.90 -1.11 -13.47 16 14 C 0.19 5.27 4.72 -4.97 -0.02 5.25 16 15 C -0.51 -14.67 8.47 -34.44 -0.29 -14.97 16 16 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 24 C 0.06 0.95 5.61 -3.76 -0.02 0.93 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.35 7.75 -51.93 -0.40 -0.06 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.40 2.24 8.61 -40.82 -0.35 1.89 16 34 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 35 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 36 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.09 1.60 5.85 -51.93 -0.30 1.29 16 38 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.08 1.95 6.79 -51.93 -0.35 1.59 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 41 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 45 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -33.60 362.65 -9.83 -43.43 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -8.48 Total: -2.90 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.21 Total: 1.52 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -1.67 Total: -56.01 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.60 -9.83 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074161793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.994 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds