Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.09000 * 109.46317 * 304.99944 * 3 2 1 5 5 C 1.53001 * 109.47243 * 185.00047 * 3 2 1 6 6 N 1.46494 * 109.47057 * 64.99789 * 3 2 1 7 7 C 1.34784 * 119.99635 * 205.00313 * 6 3 2 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99961 * 180.02562 * 7 6 3 10 10 N 1.46895 * 109.47051 * 180.02562 * 9 7 6 11 11 C 1.46957 * 110.99682 * 293.79525 * 10 9 7 12 12 C 1.53051 * 109.36505 * 176.81807 * 11 10 9 13 13 N 1.46953 * 109.36600 * 58.39965 * 12 11 10 14 14 C 1.46904 * 110.99926 * 176.81835 * 13 12 11 15 15 C 1.50707 * 109.46682 * 293.79724 * 14 13 12 16 16 H 1.07998 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00247 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47184 * 60.00052 * 19 17 15 21 21 H 1.48505 * 109.47059 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46829 * 299.99602 * 19 17 15 23 23 C 1.46957 * 110.88061 * 300.68126 * 13 12 11 24 24 C 1.46960 * 110.99672 * 170.00366 * 10 9 7 25 25 H 1.08998 * 109.47016 * 60.00424 * 1 2 3 26 26 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46822 * 299.99818 * 1 2 3 28 28 H 1.08999 * 109.47324 * 239.99385 * 2 1 3 29 29 H 1.09010 * 109.46715 * 119.99833 * 2 1 3 30 30 H 1.08991 * 109.46933 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46920 * 299.99865 * 5 3 2 32 32 H 1.08996 * 109.46997 * 59.99455 * 5 3 2 33 33 H 0.96995 * 120.00292 * 25.27746 * 6 3 2 34 34 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 35 35 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 36 36 H 1.09008 * 109.49131 * 296.78159 * 11 10 9 37 37 H 1.09000 * 109.48929 * 56.84798 * 11 10 9 38 38 H 1.09007 * 109.48687 * 298.43110 * 12 11 10 39 39 H 1.08998 * 109.49358 * 178.37225 * 12 11 10 40 40 H 1.08992 * 109.47269 * 53.79513 * 14 13 12 41 41 H 1.08999 * 109.47030 * 173.80026 * 14 13 12 42 42 H 0.96996 * 120.00049 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.48792 * 299.35526 * 23 13 12 44 44 H 1.08997 * 109.50656 * 179.30207 * 23 13 12 45 45 H 1.09000 * 109.48639 * 303.14348 * 24 10 9 46 46 H 1.08992 * 109.49731 * 63.21682 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 1.5256 3.4385 1.2994 8 8 1.7328 4.1029 0.3062 9 6 1.1275 4.1124 2.5872 10 7 1.0583 5.5648 2.3787 11 6 2.3889 6.1200 2.0943 12 6 2.2629 7.6177 1.8056 13 7 1.6524 8.2873 2.9626 14 6 1.5832 9.7398 2.7541 15 6 2.9784 10.3079 2.7102 16 1 3.8311 9.6552 2.8252 17 6 3.1661 11.6610 2.5232 18 7 2.1277 12.4557 2.3827 19 14 4.8955 12.3651 2.4681 20 1 5.6489 11.7406 1.3511 21 1 4.8256 13.8335 2.2575 22 1 5.5867 12.0810 3.7514 23 6 0.3218 7.7321 3.2470 24 6 0.4479 6.2344 3.5358 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.9281 2.4719 -0.1262 31 1 3.9995 0.9053 0.7161 32 1 3.8532 0.9569 -1.0570 33 1 1.4910 1.5665 2.0472 34 1 0.1515 3.7441 2.9033 35 1 1.8664 3.8902 3.3571 36 1 3.0379 5.9693 2.9570 37 1 2.8149 5.6169 1.2262 38 1 1.6360 7.7671 0.9264 39 1 3.2520 8.0374 1.6227 40 1 1.0764 9.9479 1.8119 41 1 1.0297 10.1984 3.5735 42 1 2.2598 13.4077 2.2515 43 1 -0.3271 7.8828 2.3843 44 1 -0.1045 8.2352 4.1149 45 1 -0.5414 5.8148 3.7186 46 1 1.0747 6.0851 4.4149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074161793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -58.138818 kcal Electronic energy + Delta-G solvation = -22926.708791 eV Core-core repulsion = 19656.927677 eV Total energy + Delta-G solvation = -3269.781114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11797 -39.76948 -37.48541 -36.34899 -34.54592 -33.33251 -31.83719 -31.06653 -30.26401 -28.14995 -25.78825 -24.61561 -24.46111 -23.27233 -21.89160 -21.41302 -20.65038 -18.52241 -18.02031 -17.51957 -16.98843 -16.53024 -16.30856 -15.84194 -15.63668 -15.45592 -15.21252 -14.99632 -14.67091 -14.52157 -14.34711 -14.17133 -13.90039 -13.45758 -13.34489 -12.99103 -12.83975 -12.70263 -12.64451 -12.42782 -12.27942 -12.24261 -12.12199 -11.98588 -11.90998 -11.61532 -11.58911 -11.20829 -10.67042 -10.60932 -10.01737 -9.29897 -9.06132 -8.22013 -6.32789 1.39165 1.43300 1.51128 1.73106 2.14026 2.39157 3.01392 3.09704 3.28982 3.75869 3.91839 3.99322 4.11822 4.19948 4.21728 4.24648 4.35879 4.39641 4.51303 4.51769 4.56572 4.65869 4.69795 4.77192 4.86104 4.89088 4.94839 5.00732 5.02217 5.07412 5.14698 5.18922 5.21194 5.26198 5.29664 5.43868 5.61651 5.65355 5.95479 6.01555 6.05716 6.30536 6.60818 6.69119 6.82270 7.36739 7.40534 8.89303 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.003137 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.214914 B = 8923.478476 C = 9561.321529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.139 3.861 4 H 0.058 0.942 5 C -0.160 4.160 6 N -0.712 5.712 7 C 0.510 3.490 8 O -0.569 6.569 9 C 0.039 3.961 10 N -0.542 5.542 11 C 0.074 3.926 12 C 0.075 3.925 13 N -0.541 5.541 14 C 0.209 3.791 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.265 1.265 23 C 0.051 3.949 24 C 0.073 3.927 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.004 0.996 39 H 0.063 0.937 40 H -0.045 1.045 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.015 0.985 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -29.171 0.798 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.219 4.219 6 N -0.366 5.366 7 C 0.297 3.703 8 O -0.447 6.447 9 C -0.092 4.092 10 N -0.268 5.268 11 C -0.054 4.054 12 C -0.054 4.054 13 N -0.266 5.266 14 C 0.082 3.918 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.078 4.078 24 C -0.054 4.054 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.022 0.978 39 H 0.082 0.918 40 H -0.027 1.027 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.097 0.903 45 H 0.127 0.873 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.091 -28.529 0.061 28.606 hybrid contribution 0.499 1.012 -0.097 1.133 sum -1.592 -27.517 -0.036 27.563 Atomic orbital electron populations 1.21781 0.95475 1.02204 1.01646 1.21780 0.96272 0.93421 1.04361 1.21000 0.94801 0.94151 0.86607 0.92376 1.22145 0.95367 1.01139 1.03217 1.45944 1.70392 1.06048 1.14263 1.20954 0.76151 0.82738 0.90488 1.90698 1.50807 1.64960 1.38239 1.22062 1.05130 0.87795 0.94192 1.61766 1.22353 1.03094 1.39590 1.22086 0.89600 0.93239 1.00486 1.21870 0.98870 0.93880 0.90771 1.62269 1.21007 1.05026 1.38339 1.19356 0.96312 0.83438 0.92673 1.21419 0.92930 0.92985 1.49095 0.92015 1.25959 1.01754 0.97364 0.94681 1.70086 1.32023 1.04870 1.50558 0.85402 0.78889 0.76989 0.79133 1.19441 1.20591 1.18979 1.22220 0.89940 0.95921 0.99712 1.22143 1.00601 0.91934 0.90753 0.94080 0.91314 0.92525 0.89589 0.89472 0.95056 0.90945 0.90587 0.74804 0.84791 0.89688 0.94335 0.89995 0.97761 0.91826 1.02746 0.97359 0.92595 0.96674 0.90311 0.87316 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.80 71.98 0.71 -0.78 16 2 C -0.12 -1.04 5.47 30.60 0.17 -0.87 16 3 C 0.14 2.13 2.57 44.99 0.12 2.24 16 4 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 5 C -0.16 -2.48 9.48 71.98 0.68 -1.79 16 6 N -0.71 -10.56 4.53 -442.53 -2.00 -12.56 16 7 C 0.51 11.93 7.50 87.66 0.66 12.59 16 8 O -0.57 -19.64 14.00 -3.03 -0.04 -19.69 16 9 C 0.04 0.77 5.45 85.56 0.47 1.23 16 10 N -0.54 -16.38 4.45 -900.28 -4.00 -20.38 16 11 C 0.07 2.65 5.26 86.31 0.45 3.11 16 12 C 0.07 3.38 5.43 86.31 0.47 3.85 16 13 N -0.54 -25.54 4.70 -900.27 -4.23 -29.78 16 14 C 0.21 11.93 4.72 85.56 0.40 12.34 16 15 C -0.53 -31.44 8.47 25.60 0.22 -31.23 16 16 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 19 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.05 1.94 5.61 86.31 0.48 2.43 16 24 C 0.07 2.06 5.61 86.31 0.48 2.54 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.54 7.75 -2.39 -0.02 0.52 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 3.13 8.61 -92.71 -0.80 2.33 16 34 H 0.13 1.75 8.03 -2.38 -0.02 1.74 16 35 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 36 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 3.06 5.85 -2.39 -0.01 3.05 16 38 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.06 3.07 6.79 -2.39 -0.02 3.06 16 40 H -0.05 -2.85 8.12 -2.39 -0.02 -2.87 16 41 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 2.88 8.07 -2.39 -0.02 2.86 16 45 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.22 362.65 -2.07 -79.29 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.14 Total: 7.23 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.77 Total: 6.14 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -9.95 Total: -120.88 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -77.22 -2.07 -79.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074161793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.147 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds