Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 N 1.46901 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.46847 * 111.00144 * 170.00079 * 4 3 2 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 3 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 N 1.46896 * 109.52240 * 177.62400 * 7 6 5 9 9 C 1.46901 * 110.99858 * 298.95494 * 8 7 6 10 10 C 1.46904 * 110.99887 * 175.00076 * 8 7 6 11 11 C 1.50706 * 109.46571 * 189.99956 * 10 8 7 12 12 O 1.21285 * 120.00287 * 0.02562 * 11 10 8 13 13 N 1.34783 * 119.99381 * 180.02562 * 11 10 8 14 14 C 1.37099 * 119.99835 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99682 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99964 * 180.02562 * 14 13 11 17 17 N 1.31416 * 119.99957 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00010 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46952 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47148 * 119.99965 * 18 16 14 21 21 H 1.48501 * 109.46944 * 240.00199 * 18 16 14 22 22 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 23 23 C 1.46830 * 110.98168 * 294.21498 * 4 3 2 24 24 H 1.08999 * 109.47587 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47534 * 300.00388 * 1 2 3 26 26 H 1.08998 * 109.47460 * 59.99964 * 1 2 3 27 27 H 1.09002 * 109.47238 * 240.00072 * 2 1 3 28 28 H 1.08998 * 109.47460 * 120.00036 * 2 1 3 29 29 H 1.09001 * 109.47466 * 60.00169 * 3 2 1 30 30 H 1.09002 * 109.47083 * 299.99583 * 3 2 1 31 31 H 1.09002 * 109.46448 * 65.81961 * 5 4 3 32 32 H 1.08994 * 109.45958 * 305.84326 * 5 4 3 33 33 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 34 34 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 35 35 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 36 36 H 1.09005 * 109.47137 * 60.00357 * 9 8 7 37 37 H 1.09007 * 109.46926 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.47269 * 299.99591 * 9 8 7 39 39 H 1.08998 * 109.47110 * 309.99932 * 10 8 7 40 40 H 1.08996 * 109.46849 * 70.00174 * 10 8 7 41 41 H 0.97001 * 119.99984 * 359.97438 * 13 11 10 42 42 H 0.96997 * 119.99458 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.50037 * 62.28538 * 22 7 6 44 44 H 1.09000 * 109.49970 * 182.40199 * 22 7 6 45 45 H 1.08995 * 109.46742 * 54.13906 * 23 4 3 46 46 H 1.09004 * 109.45381 * 294.16241 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 2.7926 -0.2387 6 6 5.5580 2.7307 -0.3773 7 6 6.1589 2.1470 0.9044 8 7 7.6158 2.0322 0.7555 9 6 7.9624 1.1336 -0.3537 10 6 8.2396 1.5865 2.0087 11 6 9.7370 1.7150 1.8977 12 8 10.2355 2.1366 0.8756 13 7 10.5223 1.3612 2.9345 14 6 11.8846 1.4784 2.8338 15 1 12.3284 1.8539 1.9236 16 6 12.6941 1.1132 3.9024 17 7 12.1541 0.6549 5.0093 18 14 14.5503 1.2723 3.7650 19 1 14.9033 1.8089 2.4260 20 1 15.0469 2.1975 4.8151 21 1 15.1761 -0.0623 3.9448 22 6 5.5581 0.7610 1.1553 23 6 4.0352 0.8800 1.2494 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7727 3.4378 0.5998 32 1 3.6031 3.1944 -1.1552 33 1 5.8208 2.0967 -1.2241 34 1 5.9499 3.7350 -0.5383 35 1 5.9291 2.8013 1.7454 36 1 7.5460 1.5248 -1.2820 37 1 9.0469 1.0670 -0.4421 38 1 7.5518 0.1426 -0.1605 39 1 7.8819 2.2044 2.8323 40 1 7.9770 0.5452 2.1949 41 1 10.1236 1.0243 3.7520 42 1 12.7193 0.4003 5.7553 43 1 5.8210 0.0961 0.3326 44 1 5.9501 0.3581 2.0892 45 1 3.6033 -0.1071 1.4137 46 1 3.7728 1.5343 2.0808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109788102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -33.206892 kcal Electronic energy + Delta-G solvation = -22910.917792 eV Core-core repulsion = 19642.217807 eV Total energy + Delta-G solvation = -3268.699985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82233 -38.27203 -36.62575 -34.18854 -33.67761 -31.24373 -30.95284 -30.89603 -27.81699 -26.43415 -25.07323 -23.91794 -23.44632 -21.82488 -20.89957 -19.30894 -18.99923 -17.78220 -16.58708 -15.89051 -15.67614 -15.13417 -14.88450 -14.74439 -14.59161 -14.22602 -13.94988 -13.68926 -13.61315 -13.41961 -12.96207 -12.64958 -12.46751 -12.38320 -11.98128 -11.79141 -11.56962 -11.49409 -11.35461 -11.23294 -11.06853 -10.98834 -10.88539 -10.72333 -10.44099 -10.31829 -10.27522 -10.17603 -9.44710 -8.48431 -8.36759 -7.92926 -7.70176 -6.38493 -3.78942 3.18467 3.28685 3.36116 3.68650 3.95552 4.05315 4.29108 4.57334 4.71505 4.78769 4.89118 5.01836 5.06700 5.14159 5.17060 5.24470 5.28434 5.30876 5.41106 5.45598 5.48044 5.55336 5.61074 5.68454 5.72701 5.76072 5.86105 5.88924 5.96504 5.98848 6.01397 6.05287 6.09964 6.25437 6.34676 6.37688 6.68589 6.93003 6.95483 7.39857 7.51935 7.58805 8.10829 8.66189 9.22116 9.58932 10.11221 10.79530 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.002852 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.876983 B = 9814.242750 C =10205.844192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.540 5.540 5 C 0.059 3.941 6 C -0.108 4.108 7 C 0.084 3.916 8 N -0.511 5.511 9 C 0.018 3.982 10 C 0.045 3.955 11 C 0.445 3.555 12 O -0.577 6.577 13 N -0.567 5.567 14 C -0.296 4.296 15 H 0.103 0.897 16 C 0.020 3.980 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.154 4.154 23 C 0.060 3.940 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.018 0.982 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -0.569 -6.492 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.025 4.025 8 N -0.233 5.233 9 C -0.129 4.129 10 C -0.086 4.086 11 C 0.231 3.769 12 O -0.461 6.461 13 N -0.204 5.204 14 C -0.426 4.426 15 H 0.121 0.879 16 C -0.181 4.181 17 N -0.545 5.545 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.193 4.193 23 C -0.068 4.068 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.036 0.964 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.532 -0.158 -7.508 21.862 hybrid contribution 0.041 -0.483 1.559 1.633 sum -20.490 -0.641 -5.949 21.346 Atomic orbital electron populations 1.21737 0.95738 1.01733 1.01679 1.21555 0.95228 0.96512 1.02755 1.22127 0.87362 0.97155 1.00590 1.61944 1.06912 1.22315 1.35281 1.22082 0.95810 0.88639 1.00420 1.21644 0.92891 1.02048 0.98009 1.21812 0.87426 0.95116 0.98175 1.61825 1.06633 1.50510 1.04318 1.22589 1.04046 0.92872 0.93418 1.21857 0.94952 0.99108 0.92703 1.19782 0.87514 0.84356 0.85255 1.90480 1.75244 1.50163 1.30176 1.41884 1.06766 1.57209 1.14507 1.19744 0.81007 1.40327 1.01488 0.87892 1.25256 1.00678 0.97136 0.95013 1.69625 1.36338 1.44121 1.04411 0.85809 0.82292 0.77804 0.78492 1.19230 1.20794 1.20814 1.22338 0.94622 0.99821 1.02547 1.22051 0.95427 0.99608 0.89756 0.92571 0.92931 0.92719 0.91125 0.91955 0.95118 0.90933 0.94990 0.90749 0.90715 0.90607 0.90676 0.91964 0.88937 0.96362 0.89700 0.93434 0.77547 0.91997 0.90493 0.91392 0.90722 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.15 0.37 -0.58 16 2 C -0.12 -0.94 5.86 -26.73 -0.16 -1.10 16 3 C 0.06 0.47 4.96 -3.82 -0.02 0.45 16 4 N -0.54 -5.52 4.66 -234.68 -1.09 -6.61 16 5 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 6 C -0.11 -1.29 5.24 -26.65 -0.14 -1.43 16 7 C 0.08 1.12 2.29 -67.59 -0.15 0.97 16 8 N -0.51 -8.73 4.49 -236.17 -1.06 -9.79 16 9 C 0.02 0.31 8.46 60.06 0.51 0.82 16 10 C 0.05 0.83 4.90 -4.97 -0.02 0.81 16 11 C 0.45 10.69 7.47 -10.98 -0.08 10.61 16 12 O -0.58 -15.74 13.91 5.55 0.08 -15.66 16 13 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 14 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 17 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 18 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.15 -1.86 4.69 -26.65 -0.13 -1.99 16 23 C 0.06 0.63 5.29 -3.84 -0.02 0.61 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 30 H 0.07 0.57 7.99 -51.93 -0.41 0.16 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 33 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 36 H 0.06 0.94 6.28 -51.93 -0.33 0.62 16 37 H 0.09 1.89 5.83 -51.93 -0.30 1.59 16 38 H 0.02 0.28 6.23 -51.93 -0.32 -0.04 16 39 H 0.08 1.43 8.00 -51.93 -0.42 1.02 16 40 H 0.05 0.81 7.01 -51.93 -0.36 0.44 16 41 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.01 6.27 -51.93 -0.33 0.68 16 44 H 0.07 0.83 6.90 -51.93 -0.36 0.48 16 45 H 0.07 0.73 6.21 -51.93 -0.32 0.40 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -30.45 349.97 -9.13 -39.58 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.86 Total: 7.99 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.11 Total: 1.71 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.49 Total: -55.14 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.45 -9.13 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109788102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.374 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds